Rroxscaffold_6G00402960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006528
Physical Location & Seq
Forward (+)
25420208 .. 25421585
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00402960.1

Sequence Viewer

Length: 252 bp
ATGGATGATGAGATTTACACAAGAAAAATTGAAGAGCTCGGCGTGACGGCGACGCTGAAGCCGCACCAAGTCGAAGGCGCCTCGTGGCTCATACGGTGGTACCCTTTCAATTTCTCCATGATGAGTGCTGATGAGCTTTTCTCAAAGGGGAGGTTGCTGCCTTACAAGGGAAGCAACAAGAGCCAGACGCAGAGGGGTACTACCACTCTTAGAGACGAGCTTCTTGTGGAGGATCGGGAGGAGGACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.67

Weight (kDa)

4.91

Isoelectric Point (pI)

41.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 99
AccB1I GGYRCC 2 cut(s) 77, 99
AciI CCGC 1 cut(s) 62
AclWI GGATC 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 78
AfaI GTAC 2 cut(s) 101, 199
AfiI CCNNNNNNNGG 1 cut(s) 167
AflIII ACRYGT 1 cut(s) 246
AgsI TTSAA 2 cut(s) 32, 109
AjiI CACGTC 1 cut(s) 247
AluBI AGCT 3 cut(s) 37, 136, 220
AluI AGCT 3 cut(s) 37, 136, 220
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 207
AlwI GGATC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 157
Asp718I GGTACC 1 cut(s) 99
AspLEI GCGC 1 cut(s) 80
BaeI ACNNNNGTAYC 2 cut(s) 83, 116
BanI GGYRCC 2 cut(s) 77, 99
BanII GRGCYC 1 cut(s) 39
BauI CACGAG 1 cut(s) 82
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 144
BceAI ACGGC 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 207
BfoI RGCGCY 1 cut(s) 81
BisI GCNGC 2 cut(s) 62, 158
BlsI GCNGC 2 cut(s) 63, 159
BmgBI CACGTC 1 cut(s) 247
BmiI GGNNCC 2 cut(s) 79, 101
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BsaHI GRCGYC 1 cut(s) 78
BsaXI ACNNNNNCTCC 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 144
BshNI GGYRCC 2 cut(s) 77, 99
BsiHKAI GWGCWC 1 cut(s) 39
BslI CCNNNNNNNGG 1 cut(s) 167
BsmAI GTCTC 1 cut(s) 207
BsmBI CGTCTC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 39
Bsp143I GATC 1 cut(s) 232
BspACI CCGC 1 cut(s) 62
BspLI GGNNCC 2 cut(s) 79, 101
BspPI GGATC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 27
BspT107I GGYRCC 2 cut(s) 77, 99
BssMI GATC 1 cut(s) 232
BssNI GRCGYC 1 cut(s) 78
BssSI CACGAG 1 cut(s) 82
Bst2BI CACGAG 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 78
BstDEI CTNAG 1 cut(s) 209
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 207
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 61, 180
BstV1I GCAGC 1 cut(s) 144
BtrI CACGTC 1 cut(s) 247
BtsCI GGATG 1 cut(s) 10
CfoI GCGC 1 cut(s) 80
CseI GACGC 2 cut(s) 61, 196
Csp6I GTAC 2 cut(s) 100, 198
CviAII CATG 1 cut(s) 118
CviJI RGCY 6 cut(s) 37, 61, 88, 136, 183, 220
CviKI_1 RGCY 6 cut(s) 37, 61, 88, 136, 183, 220
CviQI GTAC 2 cut(s) 100, 198
DdeI CTNAG 1 cut(s) 209
DinI GGCGCC 1 cut(s) 79
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 37
Eco24I GRGCYC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 37
Eco57I CTGAAG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 39
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 207
FaeI CATG 1 cut(s) 121
FaiI YATR 2 cut(s) 92, 119
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 62, 158
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 62, 158
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 62, 158
HaeII RGCGCY 1 cut(s) 81
HgaI GACGC 2 cut(s) 61, 196
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
Hpy188III TCNNGA 1 cut(s) 236
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 68
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 246
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 180
HpyF3I CTNAG 1 cut(s) 209
HpySE526I ACGT 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 78
KasI GGCGCC 1 cut(s) 77
KpnI GGTACC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 232
LguI GCTCTTC 1 cut(s) 27
LpnPI CCDG 1 cut(s) 197
Lsp1109I GCAGC 1 cut(s) 144
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 43
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 2 cut(s) 27, 109
Mly113I GGCGCC 1 cut(s) 78
MnlI CCTC 6 cut(s) 91, 144, 186, 223, 232, 235
MwoI GCNNNNNNNGC 2 cut(s) 61, 180
NarI GGCGCC 1 cut(s) 78
NdeII GATC 1 cut(s) 232
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 2 cut(s) 79, 101
NmeAIII GCCGAG 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 27
PkrI GCNGC 2 cut(s) 63, 159
PluTI GGCGCC 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 39
PspN4I GGNNCC 2 cut(s) 79, 101
RsaI GTAC 2 cut(s) 101, 199
RsaNI GTAC 2 cut(s) 100, 198
SacI GAGCTC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 27
SatI GCNGC 2 cut(s) 62, 158
Sau3AI GATC 1 cut(s) 232
SduI GDGCHC 1 cut(s) 39
SetI ASST 5 cut(s) 39, 138, 155, 222, 249
SfoI GGCGCC 1 cut(s) 79
Sse9I AATT 2 cut(s) 27, 109
SsiI CCGC 1 cut(s) 62
SspDI GGCGCC 1 cut(s) 77
SstI GAGCTC 1 cut(s) 39
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 249
TaqI TCGA 1 cut(s) 72
TasI AATT 2 cut(s) 27, 109
TauI GCSGC 1 cut(s) 64
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.