Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001074.1

Orthogroup ID

OG0006528

Physical Location & Seq

Genomic Coordinates Forward (+)

61302 .. 63135

Gene Structure 1834 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001074.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgatgagtgctgatgagcttttctcaaaggggaggttgctgccttacaagggaagcaacaagagccagatgcagaggggtactaccactcttagagacgagcttcttgtggaggatcgggaggacgacgtgtcgtttcataggtcgccgaaggggtcatcgacgaggtggaaagggcttctggggcggaagaggactgcgcacattaggtccaagaaagctgagagaggtagtgatggctcttttatggaaggaagaaggtctggccttgtgcatgagagttattcttcacagcacgactctaaccacaatagcaaaaaaccaataacccgaaaatcctttttcaccaccgcagcccctagccccttgctagcccgcctgctcctacagctctctcggccagcatacttcctggcctacgcgcctgcctgccagctcgctcccgctcctagccagctgccttgcagccccccgcccttgcacctgctccgcactgccctgcagcgttcctacaactttgccgcaagtctattgcccctgcagcccgcttccagccatctgccacgattaggattgcaaactggttgcaatcctaacttaggattgatctgctactgtaatcctaactccggattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

23.4

Weight (kDa)

10.07

Isoelectric Point (pI)

68.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50640 AT5G66800
fragaria_vesca	FvH4_1g15910
malus_domestica	MD02G1170900.v1.1 MD15G1282400.v1.1
prunus_persica	Prupe.7G134700_v2.0.a1
pyrus_communis	pycom02g13740
rosa_chinensis	RchiOBHm_Chr2g0105301
rosa_laevigata	RLG00000009823 RLG00000017414 RLG00000030156
rosa_multiflora	Rmu_sc0000329.1_g000019 Rmu_sc0001074.1_g000009 Rmu_sc0001407.1_g000013 Rmu_sc0003511.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138320 Rroxscaffold_6G00402960
rosa_rugosa	Rorug02G0127400
rosa_samantha	Rh2AG178000 Rh2BG186400 Rh2BG403700 Rh2CG182600 Rh2DG184000 Rh4DG108700 Rh6AG134000
rosa_wichuraiana	Rw2G013980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	492
Acc16I	TGCGCA	1 cut(s)	201
Acc36I	ACCTGC	1 cut(s)	492
AccBSI	CCGCTC	1 cut(s)	446
AccII	CGCG	1 cut(s)	422
AccIII	TCCGGA	1 cut(s)	629
AciI	CCGC	8 cut(s)	187, 351, 376, 444, 473, 490, 522, 546
AclWI	GGATC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	398
AfaI	GTAC	1 cut(s)	82
AfiI	CCNNNNNNNGG	4 cut(s)	50, 569, 599, 629
AflIII	ACRYGT	1 cut(s)	129
AhdI	GACNNNNNGTC	1 cut(s)	130
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	411
AluBI	AGCT	6 cut(s)	19, 103, 221, 391, 436, 457
AluI	AGCT	6 cut(s)	19, 103, 221, 391, 436, 457
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	1 cut(s)	123
Aor13HI	TCCGGA	1 cut(s)	629
AoxI	GGCC	3 cut(s)	265, 398, 414
ApeKI	GCWGC	6 cut(s)	40, 353, 457, 465, 502, 541
AspLEI	GCGC	2 cut(s)	202, 424
AspS9I	GGNCC	1 cut(s)	210
AsuHPI	GGTGA	1 cut(s)	337
AsuNHI	GCTAGC	1 cut(s)	370
AvaII	GGWCC	1 cut(s)	210
BbvI	GCAGC	6 cut(s)	27, 365, 444, 477, 514, 553
BccI	CCATC	2 cut(s)	230, 564
BciT130I	CCWGG	1 cut(s)	413
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	3 cut(s)	360, 371, 450
BfmI	CTRYAG	3 cut(s)	386, 500, 539
BfuAI	ACCTGC	1 cut(s)	492
BisI	GCNGC	7 cut(s)	41, 354, 458, 466, 503, 522, 542
BlsI	GCNGC	7 cut(s)	42, 355, 459, 467, 504, 523, 543
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	210
BmeRI	GACNNNNNGTC	1 cut(s)	130
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	1 cut(s)	60
BmtI	GCTAGC	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BsaWI	WCCGGW	1 cut(s)	629
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 569, 599, 629
Bse1I	ACTGG	1 cut(s)	586
BseAI	TCCGGA	1 cut(s)	629
BseBI	CCWGG	1 cut(s)	413
BseLI	CCNNNNNNNGG	4 cut(s)	50, 569, 599, 629
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	586
BseXI	GCAGC	6 cut(s)	27, 365, 444, 477, 514, 553
Bsh1236I	CGCG	1 cut(s)	422
BshFI	GGCC	3 cut(s)	267, 400, 416
BsiSI	CCGG	1 cut(s)	630
BslI	CCNNNNNNNGG	4 cut(s)	50, 569, 599, 629
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsnI	GGCC	3 cut(s)	267, 400, 416
Bsp13I	TCCGGA	1 cut(s)	629
Bsp143I	GATC	2 cut(s)	115, 606
BspACI	CCGC	8 cut(s)	187, 351, 376, 444, 473, 490, 522, 546
BspANI	GGCC	3 cut(s)	267, 400, 416
BspCNI	CTCAG	1 cut(s)	214
BspEI	TCCGGA	1 cut(s)	629
BspFNI	CGCG	1 cut(s)	422
BspMAI	CTGCAG	2 cut(s)	504, 543
BspMI	ACCTGC	1 cut(s)	492
BspOI	GCTAGC	1 cut(s)	374
BspPI	GGATC	1 cut(s)	123
BsrBI	CCGCTC	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	586
BssMI	GATC	2 cut(s)	115, 606
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	1 cut(s)	617
Bst6I	CTCTTC	1 cut(s)	185
BstDEI	CTNAG	3 cut(s)	92, 222, 598
BstENI	CCTNNNNNAGG	1 cut(s)	597
BstFNI	CGCG	1 cut(s)	422
BstHHI	GCGC	2 cut(s)	202, 424
BstKTI	GATC	2 cut(s)	118, 609
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	2 cut(s)	115, 606
BstMWI	GCNNNNNNNGC	5 cut(s)	63, 184, 388, 397, 541
BstNI	CCWGG	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	3 cut(s)	386, 500, 539
BstUI	CGCG	1 cut(s)	422
BstV1I	GCAGC	6 cut(s)	27, 365, 444, 477, 514, 553
BsuRI	GGCC	3 cut(s)	267, 400, 416
BtrI	CACGTC	1 cut(s)	130
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
BveI	ACCTGC	1 cut(s)	492
CfoI	GCGC	2 cut(s)	202, 424
Cfr13I	GGNCC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	81
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	1 cut(s)	81
DdeI	CTNAG	3 cut(s)	92, 222, 598
DpnI	GATC	2 cut(s)	117, 608
DpnII	GATC	2 cut(s)	115, 606
DriI	GACNNNNNGTC	1 cut(s)	130
EaeI	YGGCCR	1 cut(s)	398
Eam1104I	CTCTTC	1 cut(s)	185
Eam1105I	GACNNNNNGTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	202
Eco47I	GGWCC	1 cut(s)	210
EcoNI	CCTNNNNNAGG	1 cut(s)	597
EcoRII	CCWGG	1 cut(s)	411
Esp3I	CGTCTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	278
FaiI	YATR	4 cut(s)	141, 248, 276, 406
FatI	CATG	1 cut(s)	274
FauI	CCCGC	4 cut(s)	383, 451, 480, 553
Fnu4HI	GCNGC	7 cut(s)	41, 354, 458, 466, 503, 522, 542
Fsp4HI	GCNGC	7 cut(s)	41, 354, 458, 466, 503, 522, 542
FspBI	CTAG	3 cut(s)	360, 371, 450
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	2 cut(s)	201, 423
GluI	GCNGC	7 cut(s)	41, 354, 458, 466, 503, 522, 542
HaeIII	GGCC	3 cut(s)	267, 400, 416
HapII	CCGG	1 cut(s)	630
HhaI	GCGC	2 cut(s)	202, 424
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	2 cut(s)	200, 422
HinP1I	GCGC	2 cut(s)	200, 422
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	630
HphI	GGTGA	1 cut(s)	337
Hpy188III	TCNNGA	2 cut(s)	119, 630
Hpy99I	CGWCG	2 cut(s)	131, 166
HpyAV	CCTTC	3 cut(s)	145, 245, 252
HpyCH4III	ACNGT	1 cut(s)	617
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	8 cut(s)	73, 274, 465, 481, 502, 541, 577, 588
HpyF10VI	GCNNNNNNNGC	5 cut(s)	63, 184, 388, 397, 541
HpyF3I	CTNAG	3 cut(s)	92, 222, 598
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	2 cut(s)	200, 422
Kpn2I	TCCGGA	1 cut(s)	629
Kzo9I	GATC	2 cut(s)	115, 606
LmnI	GCTCC	4 cut(s)	387, 445, 451, 492
Lsp1109I	GCAGC	6 cut(s)	27, 365, 444, 477, 514, 553
LweI	GCATC	1 cut(s)	60
MaeI	CTAG	3 cut(s)	360, 371, 450
MaeII	ACGT	1 cut(s)	129
MalI	GATC	2 cut(s)	117, 608
MbiI	CCGCTC	1 cut(s)	446
MboI	GATC	2 cut(s)	115, 606
MboII	GAAGA	3 cut(s)	202, 267, 279
MlyI	GAGTC	1 cut(s)	293
MnlI	CCTC	7 cut(s)	27, 69, 106, 115, 159, 186, 221
MroI	TCCGGA	1 cut(s)	629
MspA1I	CMGCKG	1 cut(s)	457
MspI	CCGG	1 cut(s)	630
MspR9I	CCNGG	1 cut(s)	413
MvaI	CCWGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	422
MwoI	GCNNNNNNNGC	5 cut(s)	63, 184, 388, 397, 541
NdeII	GATC	2 cut(s)	115, 606
NheI	GCTAGC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	278
NmeAIII	GCCGAG	1 cut(s)	376
NsbI	TGCGCA	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	492
PkrI	GCNGC	7 cut(s)	42, 355, 459, 467, 504, 523, 543
PleI	GAGTC	1 cut(s)	293
PpsI	GAGTC	1 cut(s)	293
Psp6I	CCWGG	1 cut(s)	411
PspGI	CCWGG	1 cut(s)	411
PspPI	GGNCC	1 cut(s)	210
PstI	CTGCAG	2 cut(s)	504, 543
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	1 cut(s)	82
RsaNI	GTAC	1 cut(s)	81
SatI	GCNGC	7 cut(s)	41, 354, 458, 466, 503, 522, 542
Sau3AI	GATC	2 cut(s)	115, 606
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	413
SfaNI	GCATC	1 cut(s)	60
SfcI	CTRYAG	3 cut(s)	386, 500, 539
SinI	GGWCC	1 cut(s)	210
SsiI	CCGC	8 cut(s)	187, 351, 376, 444, 473, 490, 522, 546
SspMI	CTAG	3 cut(s)	360, 371, 450
StyD4I	CCNGG	1 cut(s)	411
TaaI	ACNGT	1 cut(s)	617
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	1 cut(s)	161
TauI	GCSGC	1 cut(s)	524
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	6 cut(s)	40, 353, 457, 465, 502, 541
TspDTI	ATGAA	1 cut(s)	128
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	210
XagI	CCTNNNNNAGG	1 cut(s)	597
XspI	CTAG	3 cut(s)	360, 371, 450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.