Rw2G013980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0006528
Physical Location & Seq
Reverse (-)
15228538 .. 15230153
1616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G013980.1

Sequence Viewer

Length: 549 bp
ATGGCCTGTTTACACACAATGTACAACTCAGAGCACAAGGGTCAGTACTGTAATGGTGGTAGTGGTAGTGGTGGTGCTCCAATGAGCCCTAGAATTTCATTCTCTAATGACTTTGCTGATGCGCAACATGTGATTAAGCATGAGAGGAGCTCAAGGGAAGCACCAGTGTCTTCAGATTTTGAGTTCTCAGTGACCAACTACTCCATGATGAGTGCTGATGAGCTTTTCTCAAAGGGGAGGTTGCTGCCTTACAAGGGAAGCAACAAGAGCCAGATGCAGAGGGGTACTACCACTCTTAGAGACGAGCTTCTTGTGGAGGATCGGGAGGACGACGTGTCGTTTCATAGGCCGCCGAAGGGGTCATCGACGAGGTGGAAGGGGCTTCTGGGGCGGAAGAGGACTGCGCACATTGGGTCCAAGAAAGCTGAGAGAGGTAGTGATGGCTCTTCTATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGGTATATGCAATTTGCTGGATCTGTGCCACATGCAAAGGACTGAAGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.08

Weight (kDa)

9.26

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 123, 405
AciI CCGC 2 cut(s) 350, 391
AclWI GGATC 2 cut(s) 327, 524
AcsI RAATTY 1 cut(s) 93
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 3 cut(s) 23, 47, 286
AfiI CCNNNNNNNGG 2 cut(s) 254, 356
AflIII ACRYGT 2 cut(s) 127, 333
AhdI GACNNNNNGTC 1 cut(s) 334
AjiI CACGTC 1 cut(s) 334
AluBI AGCT 4 cut(s) 150, 223, 307, 425
AluI AGCT 4 cut(s) 150, 223, 307, 425
Alw21I GWGCWC 3 cut(s) 36, 79, 152
Alw26I GTCTC 1 cut(s) 294
AlwI GGATC 2 cut(s) 327, 524
AoxI GGCC 3 cut(s) 3, 347, 469
ApeKI GCWGC 1 cut(s) 244
ApoI RAATTY 1 cut(s) 93
AspLEI GCGC 2 cut(s) 124, 406
AspS9I GGNCC 1 cut(s) 414
AvaII GGWCC 1 cut(s) 414
BanII GRGCYC 2 cut(s) 89, 152
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 3 cut(s) 36, 79, 152
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 434
BcoDI GTCTC 1 cut(s) 294
BfaI CTAG 1 cut(s) 90
BisI GCNGC 2 cut(s) 245, 350
BlsI GCNGC 2 cut(s) 246, 351
BmcAI AGTACT 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 414
BmeRI GACNNNNNGTC 1 cut(s) 334
BmgBI CACGTC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 414
BmiI GGNNCC 1 cut(s) 415
BmsI GCATC 2 cut(s) 109, 264
BpiI GAAGAC 1 cut(s) 162
BplI GAGNNNNNCTC 4 cut(s) 134, 166, 212, 244
BpuEI CTTGAG 1 cut(s) 136
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 356
Bse1I ACTGG 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 254, 356
BseMII CTCAG 3 cut(s) 42, 201, 417
BseNI ACTGG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 1 cut(s) 231
BshFI GGCC 3 cut(s) 5, 349, 471
BsiHKAI GWGCWC 3 cut(s) 36, 79, 152
BslI CCNNNNNNNGG 2 cut(s) 254, 356
BsmAI GTCTC 1 cut(s) 294
BsmBI CGTCTC 1 cut(s) 294
BsnI GGCC 3 cut(s) 5, 349, 471
Bsp1286I GDGCHC 4 cut(s) 36, 79, 89, 152
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 2 cut(s) 319, 516
BspACI CCGC 2 cut(s) 350, 391
BspANI GGCC 3 cut(s) 5, 349, 471
BspCNI CTCAG 3 cut(s) 41, 200, 418
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 2 cut(s) 327, 524
BspQI GCTCTTC 1 cut(s) 451
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 1 cut(s) 164
BssMI GATC 2 cut(s) 319, 516
Bst4CI ACNGT 1 cut(s) 50
Bst6I CTCTTC 2 cut(s) 389, 451
BstAUI TGTACA 1 cut(s) 21
BstDEI CTNAG 4 cut(s) 28, 187, 296, 426
BstHHI GCGC 2 cut(s) 124, 406
BstKTI GATC 2 cut(s) 322, 519
BstMAI GTCTC 1 cut(s) 294
BstMBI GATC 2 cut(s) 319, 516
BstMWI GCNNNNNNNGC 2 cut(s) 267, 388
BstNSI RCATGY 2 cut(s) 131, 531
BstV1I GCAGC 1 cut(s) 231
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 1 cut(s) 516
BstYI RGATCY 1 cut(s) 516
BsuRI GGCC 3 cut(s) 5, 349, 471
BtrI CACGTC 1 cut(s) 334
BtsIMutI CAGTG 2 cut(s) 171, 195
CfoI GCGC 2 cut(s) 124, 406
Cfr13I GGNCC 1 cut(s) 414
Csp6I GTAC 3 cut(s) 22, 46, 285
CviAII CATG 5 cut(s) 128, 140, 205, 479, 528
CviQI GTAC 3 cut(s) 22, 46, 285
DdeI CTNAG 4 cut(s) 28, 187, 296, 426
DpnI GATC 2 cut(s) 321, 518
DpnII GATC 2 cut(s) 319, 516
DriI GACNNNNNGTC 1 cut(s) 334
Eam1104I CTCTTC 2 cut(s) 389, 451
Eam1105I GACNNNNNGTC 1 cut(s) 334
EarI CTCTTC 2 cut(s) 389, 451
EciI GGCGGA 1 cut(s) 406
Ecl136II GAGCTC 1 cut(s) 150
Eco24I GRGCYC 2 cut(s) 89, 152
Eco47I GGWCC 1 cut(s) 414
Eco53kI GAGCTC 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 150
EcoT38I GRGCYC 2 cut(s) 89, 152
Esp3I CGTCTC 1 cut(s) 294
FaeI CATG 5 cut(s) 131, 143, 208, 482, 531
FaiI YATR 9 cut(s) 129, 141, 206, 345, 452, 480, 502, 504, 529
FatI CATG 5 cut(s) 127, 139, 204, 478, 527
Fnu4HI GCNGC 2 cut(s) 245, 350
FriOI GRGCYC 2 cut(s) 89, 152
Fsp4HI GCNGC 2 cut(s) 245, 350
FspBI CTAG 1 cut(s) 90
FspI TGCGCA 2 cut(s) 123, 405
GlaI GCGC 2 cut(s) 123, 405
GluI GCNGC 2 cut(s) 245, 350
HaeIII GGCC 3 cut(s) 5, 349, 471
HhaI GCGC 2 cut(s) 124, 406
Hin1II CATG 5 cut(s) 131, 143, 208, 482, 531
Hin6I GCGC 2 cut(s) 122, 404
HinP1I GCGC 2 cut(s) 122, 404
Hpy166II GTNNAC 1 cut(s) 11
Hpy188I TCNGA 2 cut(s) 31, 175
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 1 cut(s) 11
Hpy99I CGWCG 2 cut(s) 335, 370
HpyAV CCTTC 4 cut(s) 349, 370, 449, 456
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 4 cut(s) 277, 478, 506, 531
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 388
HpyF3I CTNAG 4 cut(s) 28, 187, 296, 426
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 5 cut(s) 131, 143, 208, 482, 531
HspAI GCGC 2 cut(s) 122, 404
Kzo9I GATC 2 cut(s) 319, 516
LguI GCTCTTC 1 cut(s) 451
LmnI GCTCC 2 cut(s) 82, 147
LpnPI CCDG 7 cut(s) 19, 177, 284, 371, 453, 482, 499
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 2 cut(s) 109, 264
MaeI CTAG 1 cut(s) 90
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 321, 518
MboI GATC 2 cut(s) 319, 516
MboII GAAGA 6 cut(s) 162, 406, 438, 471, 480, 483
MflI RGATCY 1 cut(s) 516
MhlI GDGCHC 4 cut(s) 36, 79, 89, 152
MluCI AATT 2 cut(s) 93, 507
MnlI CCTC 8 cut(s) 138, 231, 273, 310, 319, 363, 390, 425
MseI TTAA 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 267, 388
NdeII GATC 2 cut(s) 319, 516
NlaIII CATG 5 cut(s) 131, 143, 208, 482, 531
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 190
NsbI TGCGCA 2 cut(s) 123, 405
NspI RCATGY 2 cut(s) 131, 531
PciI ACATGT 1 cut(s) 127
PciSI GCTCTTC 1 cut(s) 451
PkrI GCNGC 2 cut(s) 246, 351
PscI ACATGT 1 cut(s) 127
Psp124BI GAGCTC 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 414
PsuI RGATCY 1 cut(s) 516
RsaI GTAC 3 cut(s) 23, 47, 286
RsaNI GTAC 3 cut(s) 22, 46, 285
SacI GAGCTC 1 cut(s) 152
SapI GCTCTTC 1 cut(s) 451
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 2 cut(s) 245, 350
Sau3AI GATC 2 cut(s) 319, 516
Sau96I GGNCC 1 cut(s) 414
ScaI AGTACT 1 cut(s) 47
SduI GDGCHC 4 cut(s) 36, 79, 89, 152
SfaNI GCATC 2 cut(s) 109, 264
SinI GGWCC 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 2 cut(s) 93, 507
SsiI CCGC 2 cut(s) 350, 391
SspMI CTAG 1 cut(s) 90
SstI GAGCTC 1 cut(s) 152
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 1 cut(s) 336
TaqI TCGA 1 cut(s) 365
TasI AATT 2 cut(s) 93, 507
TatI WGTACW 2 cut(s) 21, 45
TauI GCSGC 1 cut(s) 352
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TscAI CASTG 2 cut(s) 171, 195
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 87, 332
TspRI CASTG 2 cut(s) 171, 195
VpaK11BI GGWCC 1 cut(s) 414
XapI RAATTY 1 cut(s) 93
XceI RCATGY 2 cut(s) 131, 531
XspI CTAG 1 cut(s) 90
ZrmI AGTACT 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.