Rmu_sc0001407.1_g000013

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001407.1
OG0006528
Physical Location & Seq
Reverse (-)
81144 .. 81804
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001407.1_g000013.1.cds

Sequence Viewer

Length: 534 bp
atgtacaactcagagcacaagggtcagtactgtaatggtggtagtggtagtggtggtgctccaatgagccctagaatttcattctctaatgactttgctgatgcgcaacatgtgattaagcatgagaggagctcaaaggaggcaccagtgtcttcagattttgagttctcagtgaccaactactccatgatgagtgctgatgagcttttctcaaaggggaggttgctgccttacaagggaagcaacaagagccagatgcagaggggtactaccactcttagagacgagcttcttgtggaggatagggaggacgacgtgtcgtttcataggccgccgaaggggtcatcgacgaggtggaaggggcttctggggcggaagaggactgagcacattgggtccaagaaagctgagagaggtagtgatggctcttctatggaaggaagaaggtctggccttgtgcatgagagttcttcttcacaggaggtgttgaatgaaggagggtcaacttggaggaggtttgagattggaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.61

Weight (kDa)

8.69

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 105
AccB1I GGYRCC 1 cut(s) 142
AciI CCGC 2 cut(s) 332, 373
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 3 cut(s) 5, 29, 268
AfiI CCNNNNNNNGG 2 cut(s) 236, 338
AflIII ACRYGT 2 cut(s) 109, 315
AgsI TTSAA 1 cut(s) 490
AhdI GACNNNNNGTC 1 cut(s) 316
AjiI CACGTC 1 cut(s) 316
AluBI AGCT 4 cut(s) 132, 205, 289, 407
AluI AGCT 4 cut(s) 132, 205, 289, 407
Alw21I GWGCWC 4 cut(s) 18, 61, 134, 390
Alw26I GTCTC 1 cut(s) 276
AoxI GGCC 2 cut(s) 329, 451
ApeKI GCWGC 1 cut(s) 226
ApoI RAATTY 1 cut(s) 75
AspLEI GCGC 1 cut(s) 106
AspS9I GGNCC 1 cut(s) 396
AvaII GGWCC 1 cut(s) 396
BanI GGYRCC 1 cut(s) 142
BanII GRGCYC 2 cut(s) 71, 134
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 4 cut(s) 18, 61, 134, 390
BbvI GCAGC 1 cut(s) 213
BccI CCATC 1 cut(s) 416
BcoDI GTCTC 1 cut(s) 276
BfaI CTAG 1 cut(s) 72
BisI GCNGC 2 cut(s) 227, 332
BlsI GCNGC 2 cut(s) 228, 333
BmcAI AGTACT 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 396
BmeRI GACNNNNNGTC 1 cut(s) 316
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 2 cut(s) 144, 397
BmsI GCATC 2 cut(s) 91, 246
BpiI GAAGAC 1 cut(s) 144
BplI GAGNNNNNCTC 4 cut(s) 116, 148, 194, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 338
Bse1I ACTGG 1 cut(s) 146
BseLI CCNNNNNNNGG 2 cut(s) 236, 338
BseMII CTCAG 4 cut(s) 24, 183, 375, 399
BseNI ACTGG 1 cut(s) 146
BseRI GAGGAG 2 cut(s) 142, 526
BseXI GCAGC 1 cut(s) 213
BshFI GGCC 2 cut(s) 331, 453
BshNI GGYRCC 1 cut(s) 142
BsiHKAI GWGCWC 4 cut(s) 18, 61, 134, 390
BslI CCNNNNNNNGG 2 cut(s) 236, 338
BsmAI GTCTC 1 cut(s) 276
BsmBI CGTCTC 1 cut(s) 276
BsnI GGCC 2 cut(s) 331, 453
Bsp1286I GDGCHC 5 cut(s) 18, 61, 71, 134, 390
Bsp1407I TGTACA 1 cut(s) 3
BspACI CCGC 2 cut(s) 332, 373
BspANI GGCC 2 cut(s) 331, 453
BspCNI CTCAG 4 cut(s) 23, 182, 376, 400
BspLI GGNNCC 2 cut(s) 144, 397
BspQI GCTCTTC 1 cut(s) 433
BspT107I GGYRCC 1 cut(s) 142
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 32
Bst6I CTCTTC 2 cut(s) 371, 433
BstAUI TGTACA 1 cut(s) 3
BstDEI CTNAG 5 cut(s) 10, 169, 278, 384, 408
BstHHI GCGC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 276
BstMWI GCNNNNNNNGC 2 cut(s) 249, 370
BstNSI RCATGY 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 213
BstV2I GAAGAC 1 cut(s) 144
BsuRI GGCC 2 cut(s) 331, 453
BtrI CACGTC 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 153, 177
CfoI GCGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 3 cut(s) 4, 28, 267
CviAII CATG 4 cut(s) 110, 122, 187, 461
CviQI GTAC 3 cut(s) 4, 28, 267
DdeI CTNAG 5 cut(s) 10, 169, 278, 384, 408
DriI GACNNNNNGTC 1 cut(s) 316
Eam1104I CTCTTC 2 cut(s) 371, 433
Eam1105I GACNNNNNGTC 1 cut(s) 316
EarI CTCTTC 2 cut(s) 371, 433
EciI GGCGGA 1 cut(s) 388
Ecl136II GAGCTC 1 cut(s) 132
Eco24I GRGCYC 2 cut(s) 71, 134
Eco47I GGWCC 1 cut(s) 396
Eco53kI GAGCTC 1 cut(s) 132
Eco57I CTGAAG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 132
EcoT38I GRGCYC 2 cut(s) 71, 134
Esp3I CGTCTC 1 cut(s) 276
FaeI CATG 4 cut(s) 113, 125, 190, 464
FaiI YATR 7 cut(s) 111, 123, 188, 327, 434, 462, 532
FatI CATG 4 cut(s) 109, 121, 186, 460
Fnu4HI GCNGC 2 cut(s) 227, 332
FriOI GRGCYC 2 cut(s) 71, 134
Fsp4HI GCNGC 2 cut(s) 227, 332
FspBI CTAG 1 cut(s) 72
FspI TGCGCA 1 cut(s) 105
GlaI GCGC 1 cut(s) 105
GluI GCNGC 2 cut(s) 227, 332
HaeIII GGCC 2 cut(s) 331, 453
HhaI GCGC 1 cut(s) 106
Hin1II CATG 4 cut(s) 113, 125, 190, 464
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 1 cut(s) 504
HindII GTYRAC 1 cut(s) 504
Hpy166II GTNNAC 1 cut(s) 504
Hpy188I TCNGA 2 cut(s) 13, 157
Hpy8I GTNNAC 1 cut(s) 504
Hpy99I CGWCG 2 cut(s) 317, 352
HpyAV CCTTC 5 cut(s) 331, 352, 431, 438, 488
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 2 cut(s) 259, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 249, 370
HpyF3I CTNAG 5 cut(s) 10, 169, 278, 384, 408
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 4 cut(s) 113, 125, 190, 464
HspAI GCGC 1 cut(s) 104
LguI GCTCTTC 1 cut(s) 433
LmnI GCTCC 2 cut(s) 64, 129
LpnPI CCDG 5 cut(s) 159, 266, 353, 435, 464
Lsp1109I GCAGC 1 cut(s) 213
LweI GCATC 2 cut(s) 91, 246
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 1 cut(s) 172
MboII GAAGA 6 cut(s) 144, 388, 420, 453, 462, 465
MhlI GDGCHC 5 cut(s) 18, 61, 71, 134, 390
MluCI AATT 1 cut(s) 75
MseI TTAA 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 249, 370
NlaIII CATG 4 cut(s) 113, 125, 190, 464
NlaIV GGNNCC 2 cut(s) 144, 397
NmuCI GTSAC 1 cut(s) 172
NsbI TGCGCA 1 cut(s) 105
NspI RCATGY 1 cut(s) 113
PciI ACATGT 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 433
PkrI GCNGC 2 cut(s) 228, 333
PscI ACATGT 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 134
PspN4I GGNNCC 2 cut(s) 144, 397
PspPI GGNCC 1 cut(s) 396
RsaI GTAC 3 cut(s) 5, 29, 268
RsaNI GTAC 3 cut(s) 4, 28, 267
SacI GAGCTC 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 433
SaqAI TTAA 1 cut(s) 117
SatI GCNGC 2 cut(s) 227, 332
Sau96I GGNCC 1 cut(s) 396
ScaI AGTACT 1 cut(s) 29
SduI GDGCHC 5 cut(s) 18, 61, 71, 134, 390
SfaNI GCATC 2 cut(s) 91, 246
SinI GGWCC 1 cut(s) 396
Sse9I AATT 1 cut(s) 75
SsiI CCGC 2 cut(s) 332, 373
SspMI CTAG 1 cut(s) 72
SstI GAGCTC 1 cut(s) 134
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 1 cut(s) 318
TaqI TCGA 1 cut(s) 347
TasI AATT 1 cut(s) 75
TatI WGTACW 2 cut(s) 3, 27
TauI GCSGC 1 cut(s) 334
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 153, 177
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 1 cut(s) 226
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 3 cut(s) 69, 314, 507
TspRI CASTG 2 cut(s) 153, 177
VpaK11BI GGWCC 1 cut(s) 396
XapI RAATTY 1 cut(s) 75
XceI RCATGY 1 cut(s) 113
XspI CTAG 1 cut(s) 72
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.