Rh4DG108700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0006528
Physical Location & Seq
Reverse (-)
16655588 .. 16669031
13444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG108700.1

Sequence Viewer

Length: 654 bp
ATGATGAGTGCTGATGAGCTTTTCTCAAAGGGGAGGTTGCTGCCTTACAAGGGAAGCAACAAGAGCCAGATACAGAGCGGTACTACCACTCTTAGAGACGAGCTTCTTGTGGAGGATCAGGAGGACGACGTGTCGTTTCATAGGCCGCCGAAGGGGTCATCGACGAGGTGGAAGGGGCTTCTGGGGCGGAAGAGGACTGCGCACATTGGGTCCAAGAAAGCTGAGAGAGGTAGTGATGGCTCTTCTATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCACAGGAGGTGTTGAATGAAGGAGGGTCAACTTGGAGGGGGATCCCACCGAGAGGAAGAAACCCGATTTACAGCCCAGAAACCACCCGTGCGACCTGCCTTTTCTTTTTTCCTTCCACTGCTGCTGTCTCCGGCCGAATTTTCACATCATTATCTGCAACACATCCACACCATTTTTCTGCTTTTTCGAGCCAAACGGTGAACGATCGGACGTTTCCTAAGGTTGTGGAGGTACCTAATGTCTCATGGGATGCTATTGGTGAATTGGACAATGTCAAAAGAGAACTTCAAGAGGATAAAAATTCAATCTTGGGCTACAAATGCTCAACTTGGTTGATTACAGCGGCTATGGCTGGTTGCTTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.92

Weight (kDa)

9.03

Isoelectric Point (pI)

48.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 201
Acc36I ACCTGC 1 cut(s) 389
Acc65I GGTACC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 517
AccBSI CCGCTC 1 cut(s) 78
AciI CCGC 4 cut(s) 78, 146, 187, 629
AclWI GGATC 3 cut(s) 123, 322, 335
AcoI YGGCCR 1 cut(s) 418
AcsI RAATTY 2 cut(s) 423, 586
AfaI GTAC 2 cut(s) 82, 519
AfiI CCNNNNNNNGG 3 cut(s) 50, 152, 338
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 3 cut(s) 301, 575, 591
AhdI GACNNNNNGTC 1 cut(s) 130
AjiI CACGTC 1 cut(s) 130
AluBI AGCT 3 cut(s) 19, 103, 221
AluI AGCT 3 cut(s) 19, 103, 221
Alw26I GTCTC 3 cut(s) 90, 418, 532
AlwI GGATC 3 cut(s) 123, 322, 335
AoxI GGCC 3 cut(s) 143, 265, 418
ApeKI GCWGC 2 cut(s) 40, 407
ApoI RAATTY 2 cut(s) 423, 586
Asp718I GGTACC 1 cut(s) 517
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 210
AsuHPI GGTGA 2 cut(s) 496, 557
AvaII GGWCC 1 cut(s) 210
AxyI CCTNAGG 1 cut(s) 504
BamHI GGATCC 1 cut(s) 327
BanI GGYRCC 1 cut(s) 517
BbvI GCAGC 2 cut(s) 27, 394
BccI CCATC 1 cut(s) 230
BcoDI GTCTC 3 cut(s) 90, 418, 532
BfuAI ACCTGC 1 cut(s) 389
BisI GCNGC 4 cut(s) 41, 146, 408, 630
BlsI GCNGC 4 cut(s) 42, 147, 409, 631
Bme18I GGWCC 1 cut(s) 210
BmeRI GACNNNNNGTC 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 3 cut(s) 211, 329, 519
BmsI GCATC 1 cut(s) 526
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 152, 338
Bse21I CCTNAGG 1 cut(s) 504
BseGI GGATG 2 cut(s) 448, 541
BseLI CCNNNNNNNGG 3 cut(s) 50, 152, 338
BseMII CTCAG 1 cut(s) 213
BseX3I CGGCCG 1 cut(s) 418
BseXI GCAGC 2 cut(s) 27, 394
Bsh1285I CGRYCG 2 cut(s) 421, 493
BshFI GGCC 3 cut(s) 145, 267, 420
BshNI GGYRCC 1 cut(s) 517
BsiEI CGRYCG 2 cut(s) 421, 493
BsiSI CCGG 1 cut(s) 417
BslI CCNNNNNNNGG 3 cut(s) 50, 152, 338
BsmAI GTCTC 3 cut(s) 90, 418, 532
BsmBI CGTCTC 1 cut(s) 90
BsnI GGCC 3 cut(s) 145, 267, 420
Bsp143I GATC 3 cut(s) 115, 327, 490
BspACI CCGC 4 cut(s) 78, 146, 187, 629
BspANI GGCC 3 cut(s) 145, 267, 420
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 3 cut(s) 211, 329, 519
BspMI ACCTGC 1 cut(s) 389
BspPI GGATC 3 cut(s) 123, 322, 335
BspQI GCTCTTC 1 cut(s) 247
BspT107I GGYRCC 1 cut(s) 517
BsrBI CCGCTC 1 cut(s) 78
BssMI GATC 3 cut(s) 115, 327, 490
Bst4CI ACNGT 1 cut(s) 484
Bst6I CTCTTC 2 cut(s) 185, 247
BstDEI CTNAG 3 cut(s) 92, 222, 504
BstF5I GGATG 2 cut(s) 448, 541
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 3 cut(s) 118, 330, 493
BstMAI GTCTC 3 cut(s) 90, 418, 532
BstMBI GATC 3 cut(s) 115, 327, 490
BstMCI CGRYCG 2 cut(s) 421, 493
BstMWI GCNNNNNNNGC 4 cut(s) 63, 184, 606, 635
BstV1I GCAGC 2 cut(s) 27, 394
BstX2I RGATCY 1 cut(s) 327
BstYI RGATCY 1 cut(s) 327
BstZI CGGCCG 1 cut(s) 418
Bsu36I CCTNAGG 1 cut(s) 504
BsuRI GGCC 3 cut(s) 145, 267, 420
BtrI CACGTC 1 cut(s) 130
BtsCI GGATG 2 cut(s) 448, 541
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 402
BveI ACCTGC 1 cut(s) 389
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 2 cut(s) 81, 518
CviAII CATG 2 cut(s) 275, 531
CviQI GTAC 2 cut(s) 81, 518
DdeI CTNAG 3 cut(s) 92, 222, 504
DpnI GATC 3 cut(s) 117, 329, 492
DpnII GATC 3 cut(s) 115, 327, 490
DriI GACNNNNNGTC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 418
EagI CGGCCG 1 cut(s) 418
Eam1104I CTCTTC 2 cut(s) 185, 247
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 2 cut(s) 185, 247
EciI GGCGGA 1 cut(s) 202
EclXI CGGCCG 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 210
Eco52I CGGCCG 1 cut(s) 418
Eco81I CCTNAGG 1 cut(s) 504
Esp3I CGTCTC 1 cut(s) 90
FaeI CATG 2 cut(s) 278, 534
FaiI YATR 6 cut(s) 141, 248, 276, 532, 635, 652
FatI CATG 2 cut(s) 274, 530
Fnu4HI GCNGC 4 cut(s) 41, 146, 408, 630
FokI GGATG 2 cut(s) 435, 548
Fsp4HI GCNGC 4 cut(s) 41, 146, 408, 630
FspI TGCGCA 1 cut(s) 201
GlaI GCGC 1 cut(s) 201
GluI GCNGC 4 cut(s) 41, 146, 408, 630
HaeIII GGCC 3 cut(s) 145, 267, 420
HapII CCGG 1 cut(s) 417
HhaI GCGC 1 cut(s) 202
Hin1II CATG 2 cut(s) 278, 534
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 315
HindII GTYRAC 1 cut(s) 315
HpaII CCGG 1 cut(s) 417
HphI GGTGA 2 cut(s) 496, 557
Hpy166II GTNNAC 2 cut(s) 315, 487
Hpy188I TCNGA 1 cut(s) 495
Hpy188III TCNNGA 2 cut(s) 119, 575
Hpy8I GTNNAC 2 cut(s) 315, 487
Hpy99I CGWCG 2 cut(s) 131, 166
HpyAV CCTTC 6 cut(s) 145, 166, 245, 252, 299, 408
HpyCH4III ACNGT 1 cut(s) 484
HpyCH4IV ACGT 2 cut(s) 129, 497
HpyCH4V TGCA 2 cut(s) 274, 443
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 184, 606, 635
HpyF3I CTNAG 3 cut(s) 92, 222, 504
HpySE526I ACGT 2 cut(s) 129, 497
Hsp92II CATG 2 cut(s) 278, 534
HspAI GCGC 1 cut(s) 200
KpnI GGTACC 1 cut(s) 521
Kzo9I GATC 3 cut(s) 115, 327, 490
LguI GCTCTTC 1 cut(s) 247
LpnPI CCDG 9 cut(s) 80, 104, 167, 249, 275, 375, 394, 430, 624
Lsp1109I GCAGC 2 cut(s) 27, 394
LweI GCATC 1 cut(s) 526
MaeII ACGT 2 cut(s) 129, 497
MalI GATC 3 cut(s) 117, 329, 492
MbiI CCGCTC 1 cut(s) 78
MboI GATC 3 cut(s) 115, 327, 490
MboII GAAGA 5 cut(s) 202, 234, 267, 276, 354
MflI RGATCY 1 cut(s) 327
MluCI AATT 3 cut(s) 423, 548, 586
MspA1I CMGCKG 1 cut(s) 629
MspI CCGG 1 cut(s) 417
MwoI GCNNNNNNNGC 4 cut(s) 63, 184, 606, 635
NdeII GATC 3 cut(s) 115, 327, 490
NlaIII CATG 2 cut(s) 278, 534
NlaIV GGNNCC 3 cut(s) 211, 329, 519
NsbI TGCGCA 1 cut(s) 201
PciSI GCTCTTC 1 cut(s) 247
PflFI GACNNNGTC 1 cut(s) 557
PkrI GCNGC 4 cut(s) 42, 147, 409, 631
Ple19I CGATCG 1 cut(s) 493
PspN4I GGNNCC 3 cut(s) 211, 329, 519
PspPI GGNCC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 327
PsyI GACNNNGTC 1 cut(s) 557
PvuI CGATCG 1 cut(s) 493
RsaI GTAC 2 cut(s) 82, 519
RsaNI GTAC 2 cut(s) 81, 518
SapI GCTCTTC 1 cut(s) 247
SatI GCNGC 4 cut(s) 41, 146, 408, 630
Sau3AI GATC 3 cut(s) 115, 327, 490
Sau96I GGNCC 1 cut(s) 210
SfaNI GCATC 1 cut(s) 526
SinI GGWCC 1 cut(s) 210
Sse9I AATT 3 cut(s) 423, 548, 586
SsiI CCGC 4 cut(s) 78, 146, 187, 629
TaaI ACNGT 1 cut(s) 484
TaiI ACGT 2 cut(s) 132, 500
TaqI TCGA 2 cut(s) 161, 473
TasI AATT 3 cut(s) 423, 548, 586
TauI GCSGC 2 cut(s) 148, 632
TscAI CASTG 1 cut(s) 409
TseI GCWGC 2 cut(s) 40, 407
TspDTI ATGAA 2 cut(s) 128, 318
TspRI CASTG 1 cut(s) 409
Tth111I GACNNNGTC 1 cut(s) 557
VpaK11BI GGWCC 1 cut(s) 210
XapI RAATTY 2 cut(s) 423, 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.