Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0006528

Physical Location & Seq

Genomic Coordinates Reverse (-)

14763721 .. 14764883

Gene Structure 1163 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1170900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCAGCCTGCTTAGAGATGTACAACTCATCAGAGCATAAGTATAAGTTTGCTCCTCCTCTTCCTCCTCCGATGAGCCCAAGAATCTCCTTCTCCAATGACTTTGCAGATGCCATCCACCACGAAATCCGGAGGGAGGTGGCGGCTGCTCCGCCTGCTGTCTCCTCAGATTTTGAGTTCTCTGTTTCCAACTACTCCATGATTAGCGCTGATGAGCTCTTCTCCAAGGGCAGGCTGCTGCCCTTCAAGGACGGCTGCAGCAGCCAGACGCGGAGGAGCACCACCACTCTCAGAGAAGAGCTGCTCCATGGGGAGGATCACGATGATGATGTCTCGTCATCCAGGCCGCCGAAGGGTGCAAGGTGGAAGGGGCTCCTCGGTAGGAAGAGTAGGTCCCACATTGTGTGCAAGAAAGCTGAGAAGAGTGACGGAGATGGCAGAAGGTCTGGACTTGCGGTGGTTCATGAGGAAGCTCAGCATCATGTTAATATTAAGACATCGCAGGAGGTGTTGGACGAAGGAGGGTCAAGTTGGAGAGATGTGGAGATTGGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.53

Weight (kDa)

6.3

Isoelectric Point (pI)

71.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50640 AT5G66800
fragaria_vesca	FvH4_1g15910
malus_domestica	MD02G1170900.v1.1 MD15G1282400.v1.1
prunus_persica	Prupe.7G134700_v2.0.a1
pyrus_communis	pycom02g13740
rosa_chinensis	RchiOBHm_Chr2g0105301
rosa_laevigata	RLG00000009823 RLG00000017414 RLG00000030156
rosa_multiflora	Rmu_sc0000329.1_g000019 Rmu_sc0001074.1_g000009 Rmu_sc0001407.1_g000013 Rmu_sc0003511.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138320 Rroxscaffold_6G00402960
rosa_rugosa	Rorug02G0127400
rosa_samantha	Rh2AG178000 Rh2BG186400 Rh2BG403700 Rh2CG182600 Rh2DG184000 Rh4DG108700 Rh6AG134000
rosa_wichuraiana	Rw2G013980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	271
AccIII	TCCGGA	1 cut(s)	129
AciI	CCGC	5 cut(s)	143, 152, 271, 347, 455
AclWI	GGATC	1 cut(s)	324
AdeI	CACNNNGTG	1 cut(s)	403
AfaI	GTAC	1 cut(s)	23
AfeI	AGCGCT	1 cut(s)	208
AfiI	CCNNNNNNNGG	4 cut(s)	136, 231, 313, 353
AgsI	TTSAA	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	341
AluBI	AGCT	4 cut(s)	217, 301, 416, 473
AluI	AGCT	4 cut(s)	217, 301, 416, 473
Alw21I	GWGCWC	2 cut(s)	219, 281
Alw26I	GTCTC	2 cut(s)	166, 337
AlwI	GGATC	1 cut(s)	324
Aor13HI	TCCGGA	1 cut(s)	129
Aor51HI	AGCGCT	1 cut(s)	208
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	8 cut(s)	5, 146, 235, 238, 255, 258, 261, 301
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	393
BanII	GRGCYC	3 cut(s)	80, 219, 375
Bbv12I	GWGCWC	2 cut(s)	219, 281
BbvI	GCAGC	8 cut(s)	17, 133, 222, 225, 242, 270, 273, 288
BccI	CCATC	2 cut(s)	122, 428
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	166, 337
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	210
BlpI	GCTNAGC	1 cut(s)	474
Bme1390I	CCNGG	1 cut(s)	343
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	374, 395
BmrFI	CCNGG	1 cut(s)	343
BmsI	GCATC	2 cut(s)	100, 487
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
Bpu1102I	GCTNAGC	1 cut(s)	474
BsaJI	CCNNGG	3 cut(s)	225, 307, 376
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 231, 313, 353
BseAI	TCCGGA	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	343
BseDI	CCNNGG	3 cut(s)	225, 307, 376
BseGI	GGATG	2 cut(s)	114, 338
BseLI	CCNNNNNNNGG	4 cut(s)	136, 231, 313, 353
BseMII	CTCAG	4 cut(s)	180, 304, 408, 488
BseRI	GAGGAG	6 cut(s)	45, 48, 57, 154, 289, 365
BseXI	GCAGC	8 cut(s)	17, 133, 222, 225, 242, 270, 273, 288
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	1 cut(s)	346
BsiHKAI	GWGCWC	2 cut(s)	219, 281
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	4 cut(s)	136, 231, 313, 353
BsmAI	GTCTC	2 cut(s)	166, 337
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	4 cut(s)	80, 219, 281, 375
Bsp13I	TCCGGA	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	316
Bsp1720I	GCTNAGC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	5 cut(s)	143, 152, 271, 347, 455
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	4 cut(s)	179, 303, 409, 487
BspEI	TCCGGA	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	374, 395
BspMAI	CTGCAG	1 cut(s)	260
BspPI	GGATC	1 cut(s)	324
BspQI	GCTCTTC	2 cut(s)	224, 291
BsrGI	TGTACA	1 cut(s)	21
BssECI	CCNNGG	3 cut(s)	225, 307, 376
BssMI	GATC	1 cut(s)	316
BssT1I	CCWWGG	2 cut(s)	225, 307
Bst2UI	CCWGG	1 cut(s)	343
Bst6I	CTCTTC	5 cut(s)	66, 224, 291, 380, 416
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	10, 156, 233
BstDEI	CTNAG	5 cut(s)	13, 166, 290, 417, 474
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	2 cut(s)	114, 338
BstFNI	CGCG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	2 cut(s)	166, 337
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 261
BstNI	CCWGG	1 cut(s)	343
BstSCI	CCNGG	1 cut(s)	341
BstSFI	CTRYAG	1 cut(s)	256
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	8 cut(s)	17, 133, 222, 225, 242, 270, 273, 288
BsuRI	GGCC	1 cut(s)	346
BtgI	CCRYGG	1 cut(s)	307
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	114, 338
Cac8I	GCNNGC	3 cut(s)	10, 156, 233
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	393
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	4 cut(s)	199, 308, 464, 482
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	5 cut(s)	13, 166, 290, 417, 474
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DraIII	CACNNNGTG	1 cut(s)	403
Eam1104I	CTCTTC	5 cut(s)	66, 224, 291, 380, 416
EarI	CTCTTC	5 cut(s)	66, 224, 291, 380, 416
EciI	GGCGGA	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	225, 307
Eco24I	GRGCYC	3 cut(s)	80, 219, 375
Eco47I	GGWCC	1 cut(s)	393
Eco47III	AGCGCT	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	341
EcoT14I	CCWWGG	2 cut(s)	225, 307
EcoT38I	GRGCYC	3 cut(s)	80, 219, 375
ErhI	CCWWGG	2 cut(s)	225, 307
FaeI	CATG	4 cut(s)	202, 311, 467, 485
FaiI	YATR	7 cut(s)	39, 45, 200, 309, 465, 483, 556
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	4 cut(s)	198, 307, 463, 481
FokI	GGATG	2 cut(s)	101, 325
FriOI	GRGCYC	3 cut(s)	80, 219, 375
GlaI	GCGC	1 cut(s)	208
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	4 cut(s)	202, 311, 467, 485
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	34, 72, 169, 293
Hpy188III	TCNNGA	4 cut(s)	130, 320, 447, 464
HpyAV	CCTTC	6 cut(s)	100, 253, 346, 361, 435, 512
HpyCH4V	TGCA	4 cut(s)	107, 258, 359, 408
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 261
HpyF3I	CTNAG	5 cut(s)	13, 166, 290, 417, 474
Hsp92II	CATG	4 cut(s)	202, 311, 467, 485
HspAI	GCGC	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	316
LguI	GCTCTTC	2 cut(s)	224, 291
LmnI	GCTCC	5 cut(s)	58, 154, 276, 309, 378
LpnPI	CCDG	9 cut(s)	22, 143, 168, 217, 278, 328, 355, 432, 488
Lsp1109I	GCAGC	8 cut(s)	17, 133, 222, 225, 242, 270, 273, 288
LweI	GCATC	2 cut(s)	100, 487
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	5 cut(s)	53, 211, 308, 397, 433
MhlI	GDGCHC	4 cut(s)	80, 219, 281, 375
MmeI	TCCRAC	3 cut(s)	213, 492, 512
MroI	TCCGGA	1 cut(s)	129
MseI	TTAA	2 cut(s)	486, 492
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	130
MspR9I	CCNGG	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	343
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	155, 261
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	4 cut(s)	202, 311, 467, 485
NlaIV	GGNNCC	2 cut(s)	374, 395
NmuCI	GTSAC	1 cut(s)	425
PagI	TCATGA	1 cut(s)	463
PciSI	GCTCTTC	2 cut(s)	224, 291
PfeI	GAWTC	1 cut(s)	84
PpuMI	RGGWCCY	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	341
PspGI	CCWGG	1 cut(s)	341
PspN4I	GGNNCC	2 cut(s)	374, 395
PspPI	GGNCC	1 cut(s)	393
PspPPI	RGGWCCY	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	2 cut(s)	224, 291
SaqAI	TTAA	2 cut(s)	486, 492
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	1 cut(s)	393
ScrFI	CCNGG	1 cut(s)	343
SduI	GDGCHC	4 cut(s)	80, 219, 281, 375
SetI	ASST	9 cut(s)	141, 219, 303, 365, 395, 418, 446, 475, 510
SfaNI	GCATC	2 cut(s)	100, 487
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	324
SsiI	CCGC	5 cut(s)	143, 152, 271, 347, 455
SspI	AATATT	1 cut(s)	490
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	341
StyI	CCWWGG	2 cut(s)	225, 307
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	2 cut(s)	146, 349
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	2 cut(s)	486, 492
Tru9I	TTAA	2 cut(s)	486, 492
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	8 cut(s)	5, 146, 235, 238, 255, 258, 261, 301
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	1 cut(s)	452
TspGWI	ACGGA	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.