RLG00000030156

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006528
Physical Location & Seq
Forward (+)
56534978 .. 56537365
2388 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030156

Sequence Viewer

Length: 342 bp
ATGCAGAGGGGTACTACCACTCTTAGAGACGAGCTTCTTGTGGAGGATCGGGAGGACGACGTGTCGTTTCATAGGCCGCCGAAGGGGTCATCGACGAGGTGGAAGGGGCTTCTGGGGCGGAAGAGGATTGCGCACATTGGGTCCAAGAAAGCTGAGAGAGGTAGTGATGGCTCTTCTATGGAAGGAAGAAGGTCTGGCCTTGTGCATGAGAGTTCTTCTTCACAGATGGAACCACTTGCATATAGGAAAATGGACTTTGAAGAATTTTGTGCTGCTGCAATTAGCACGCATCAATTGGAGGCCCTCGAAGGATGGGAGCAGATAGCATCTACTGCTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.65

Weight (kDa)

6.42

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 132
AciI CCGC 2 cut(s) 77, 118
AclWI GGATC 1 cut(s) 54
AcsI RAATTY 1 cut(s) 263
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 83
AflIII ACRYGT 1 cut(s) 60
AgsI TTSAA 1 cut(s) 260
AhdI GACNNNNNGTC 1 cut(s) 61
AjiI CACGTC 1 cut(s) 61
AluBI AGCT 2 cut(s) 34, 152
AluI AGCT 2 cut(s) 34, 152
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 54
AoxI GGCC 3 cut(s) 74, 196, 300
ApeKI GCWGC 2 cut(s) 272, 275
ApoI RAATTY 1 cut(s) 263
AspLEI GCGC 1 cut(s) 133
AspS9I GGNCC 2 cut(s) 141, 301
AvaII GGWCC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 259, 262
BccI CCATC 3 cut(s) 161, 220, 306
BcoDI GTCTC 1 cut(s) 21
BisI GCNGC 3 cut(s) 77, 273, 276
BlsI GCNGC 3 cut(s) 78, 274, 277
Bme18I GGWCC 1 cut(s) 141
BmeRI GACNNNNNGTC 1 cut(s) 61
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 141, 301
BmiI GGNNCC 2 cut(s) 142, 231
BmsI GCATC 2 cut(s) 298, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 317
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 144
BseXI GCAGC 2 cut(s) 259, 262
BshFI GGCC 3 cut(s) 76, 198, 302
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 21
BsmBI CGTCTC 1 cut(s) 21
BsnI GGCC 3 cut(s) 76, 198, 302
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 2 cut(s) 77, 118
BspANI GGCC 3 cut(s) 76, 198, 302
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 142, 231
BspPI GGATC 1 cut(s) 54
BspQI GCTCTTC 1 cut(s) 178
BssMI GATC 1 cut(s) 46
Bst6I CTCTTC 2 cut(s) 116, 178
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 23, 153
BstF5I GGATG 1 cut(s) 317
BstHHI GCGC 1 cut(s) 133
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 115, 332
BstV1I GCAGC 2 cut(s) 259, 262
BsuRI GGCC 3 cut(s) 76, 198, 302
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 317
Cac8I GCNNGC 1 cut(s) 287
CfoI GCGC 1 cut(s) 133
Cfr13I GGNCC 2 cut(s) 141, 301
Csp6I GTAC 1 cut(s) 12
CviAII CATG 1 cut(s) 206
CviJI RGCY 7 cut(s) 34, 76, 109, 152, 171, 198, 302
CviKI_1 RGCY 7 cut(s) 34, 76, 109, 152, 171, 198, 302
CviQI GTAC 1 cut(s) 12
DdeI CTNAG 2 cut(s) 23, 153
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DriI GACNNNNNGTC 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 116, 178
Eam1105I GACNNNNNGTC 1 cut(s) 61
EarI CTCTTC 2 cut(s) 116, 178
EciI GGCGGA 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 301
Esp3I CGTCTC 1 cut(s) 21
FaeI CATG 1 cut(s) 209
FaiI YATR 5 cut(s) 72, 179, 207, 241, 243
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 77, 273, 276
FokI GGATG 1 cut(s) 324
Fsp4HI GCNGC 3 cut(s) 77, 273, 276
FspI TGCGCA 1 cut(s) 132
GlaI GCGC 1 cut(s) 132
GluI GCNGC 3 cut(s) 77, 273, 276
HaeIII GGCC 3 cut(s) 76, 198, 302
HhaI GCGC 1 cut(s) 133
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 131
HinP1I GCGC 1 cut(s) 131
Hpy188III TCNNGA 1 cut(s) 50
Hpy99I CGWCG 2 cut(s) 62, 97
HpyAV CCTTC 5 cut(s) 76, 97, 176, 183, 302
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 4, 205, 239, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 332
HpyF3I CTNAG 2 cut(s) 23, 153
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 131
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 316
LpnPI CCDG 2 cut(s) 98, 180
Lsp1109I GCAGC 2 cut(s) 259, 262
LweI GCATC 2 cut(s) 298, 335
MaeII ACGT 1 cut(s) 60
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 6 cut(s) 133, 165, 198, 207, 210, 272
MfeI CAATTG 1 cut(s) 293
MluCI AATT 3 cut(s) 263, 279, 293
MnlI CCTC 7 cut(s) 37, 46, 90, 117, 152, 292, 314
MseI TTAA 1 cut(s) 340
MunI CAATTG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 115, 332
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 2 cut(s) 142, 231
NsbI TGCGCA 1 cut(s) 132
PciSI GCTCTTC 1 cut(s) 178
PkrI GCNGC 3 cut(s) 78, 274, 277
PspN4I GGNNCC 2 cut(s) 142, 231
PspPI GGNCC 2 cut(s) 141, 301
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
SapI GCTCTTC 1 cut(s) 178
SaqAI TTAA 1 cut(s) 340
SatI GCNGC 3 cut(s) 77, 273, 276
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 2 cut(s) 141, 301
SetI ASST 6 cut(s) 36, 63, 101, 154, 163, 194
SfaNI GCATC 2 cut(s) 298, 335
SinI GGWCC 1 cut(s) 141
Sse9I AATT 3 cut(s) 263, 279, 293
SsiI CCGC 2 cut(s) 77, 118
TaiI ACGT 1 cut(s) 63
TaqI TCGA 2 cut(s) 92, 306
TasI AATT 3 cut(s) 263, 279, 293
TauI GCSGC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 340
Tru9I TTAA 1 cut(s) 340
TseI GCWGC 2 cut(s) 272, 275
TspDTI ATGAA 1 cut(s) 59
VpaK11BI GGWCC 1 cut(s) 141
XapI RAATTY 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.