Rmu_sc0000329.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000329.1
OG0006528
Physical Location & Seq
Reverse (-)
89567 .. 90038
472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000329.1_g000019.1.cds

Sequence Viewer

Length: 348 bp
atgatgagtgctgatgagcttttctcaaaggggaggttgctgccttacaagggaagcaacaagagccagatacagagcggtactaccactcttagagacgagcttcttgtggaggatcgggaggacgacgtgtcgtttcaaaggccgccgaaggggtcatcgacgaggtggaaggggcttctggggcggaagaggactgcgcacattgggtccaagaaaactgagagaggtagtgatggatcttctatggaaggaagaaggtctggccttgtgcaggagagttcttcttcacaggaggtgttgaatgaaggagggtcaacttggagggggtttgagattggaatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

12.66

Weight (kDa)

9.45

Isoelectric Point (pI)

61.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 201
AccBSI CCGCTC 1 cut(s) 78
AciI CCGC 3 cut(s) 78, 146, 187
AclWI GGATC 2 cut(s) 123, 247
AfaI GTAC 1 cut(s) 82
AfiI CCNNNNNNNGG 3 cut(s) 50, 152, 274
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 2 cut(s) 140, 304
AhdI GACNNNNNGTC 1 cut(s) 130
AjiI CACGTC 1 cut(s) 130
AluBI AGCT 2 cut(s) 19, 103
AluI AGCT 2 cut(s) 19, 103
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 2 cut(s) 123, 247
AoxI GGCC 2 cut(s) 143, 265
ApeKI GCWGC 1 cut(s) 40
AspLEI GCGC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 210
AvaII GGWCC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 90
BisI GCNGC 2 cut(s) 41, 146
BlsI GCNGC 2 cut(s) 42, 147
Bme18I GGWCC 1 cut(s) 210
BmeRI GACNNNNNGTC 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 210
BmiI GGNNCC 1 cut(s) 211
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 152, 274
BseLI CCNNNNNNNGG 3 cut(s) 50, 152, 274
BseMII CTCAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 293
BshFI GGCC 2 cut(s) 145, 267
BslI CCNNNNNNNGG 3 cut(s) 50, 152, 274
BsmAI GTCTC 1 cut(s) 90
BsmBI CGTCTC 1 cut(s) 90
BsnI GGCC 2 cut(s) 145, 267
Bsp143I GATC 2 cut(s) 115, 239
BspACI CCGC 3 cut(s) 78, 146, 187
BspANI GGCC 2 cut(s) 145, 267
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 2 cut(s) 123, 247
BsrBI CCGCTC 1 cut(s) 78
BssMI GATC 2 cut(s) 115, 239
Bst6I CTCTTC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 92, 222
BstENI CCTNNNNNAGG 1 cut(s) 272
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 2 cut(s) 118, 242
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 2 cut(s) 115, 239
BstMWI GCNNNNNNNGC 2 cut(s) 63, 184
BstV1I GCAGC 1 cut(s) 27
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 2 cut(s) 145, 267
BtrI CACGTC 1 cut(s) 130
CfoI GCGC 1 cut(s) 202
Cfr13I GGNCC 1 cut(s) 210
Csp6I GTAC 1 cut(s) 81
CviJI RGCY 6 cut(s) 19, 66, 103, 145, 178, 267
CviKI_1 RGCY 6 cut(s) 19, 66, 103, 145, 178, 267
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 2 cut(s) 92, 222
DpnI GATC 2 cut(s) 117, 241
DpnII GATC 2 cut(s) 115, 239
DriI GACNNNNNGTC 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 185
Eam1105I GACNNNNNGTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 185
EciI GGCGGA 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 210
EcoNI CCTNNNNNAGG 1 cut(s) 272
Esp3I CGTCTC 1 cut(s) 90
FaiI YATR 2 cut(s) 248, 346
Fnu4HI GCNGC 2 cut(s) 41, 146
Fsp4HI GCNGC 2 cut(s) 41, 146
FspI TGCGCA 1 cut(s) 201
GlaI GCGC 1 cut(s) 201
GluI GCNGC 2 cut(s) 41, 146
HaeIII GGCC 2 cut(s) 145, 267
HhaI GCGC 1 cut(s) 202
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HincII GTYRAC 1 cut(s) 318
HindII GTYRAC 1 cut(s) 318
Hpy166II GTNNAC 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 2 cut(s) 131, 166
HpyAV CCTTC 5 cut(s) 145, 166, 245, 252, 302
HpyCH4IV ACGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 184
HpyF3I CTNAG 2 cut(s) 92, 222
HpySE526I ACGT 1 cut(s) 129
HspAI GCGC 1 cut(s) 200
Kzo9I GATC 2 cut(s) 115, 239
LpnPI CCDG 5 cut(s) 80, 167, 249, 260, 278
Lsp1109I GCAGC 1 cut(s) 27
MaeII ACGT 1 cut(s) 129
MalI GATC 2 cut(s) 117, 241
MbiI CCGCTC 1 cut(s) 78
MboI GATC 2 cut(s) 115, 239
MboII GAAGA 5 cut(s) 202, 234, 267, 276, 279
MflI RGATCY 1 cut(s) 239
MnlI CCTC 9 cut(s) 27, 106, 115, 159, 186, 221, 289, 305, 318
MwoI GCNNNNNNNGC 2 cut(s) 63, 184
NdeII GATC 2 cut(s) 115, 239
NlaIV GGNNCC 1 cut(s) 211
NsbI TGCGCA 1 cut(s) 201
PkrI GCNGC 2 cut(s) 42, 147
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 1 cut(s) 210
PsuI RGATCY 1 cut(s) 239
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SatI GCNGC 2 cut(s) 41, 146
Sau3AI GATC 2 cut(s) 115, 239
Sau96I GGNCC 1 cut(s) 210
SetI ASST 8 cut(s) 21, 38, 105, 132, 170, 232, 263, 300
SinI GGWCC 1 cut(s) 210
SsiI CCGC 3 cut(s) 78, 146, 187
TaiI ACGT 1 cut(s) 132
TaqI TCGA 1 cut(s) 161
TauI GCSGC 1 cut(s) 148
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 321
VpaK11BI GGWCC 1 cut(s) 210
XagI CCTNNNNNAGG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.