Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006528

Physical Location & Seq

Genomic Coordinates Reverse (-)

25499678 .. 25500922

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1282400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCAGCCTGCTTAGACATGTACAACCCATCAGAGCATAAGTTTGCTCCTCCTCTTCCTCCTCCTCCAATGAGCCCAAGAATCTCCTTCTCCAATGACTTTGCAGATGCCATCCACCATGAAATCCGGAGGGAGGTGGCGGCTGCTCCACCTGCCGTCTCCTCGGATTTTGAGTTCTCCGTTTCCAACTATTCCATGATGAGCGCTGACGAGCTCTTCTTCAAGGGCAGGCTGCTGCCCTTCAAGGACGGCTGCAGCAGCCAGACGCGGAGGAGCACCACCACTCTCAGAGATGAGCTGCTCCACGGGGAGGATCATGACGATGACGTTTCGTCATCCAGGCCGCCGAAGGGTTCGTCGTCAACAAGGTGGAAGGGGCTCCTGGGAAGGAAGAGTAGGTCCCACATTGTTTCCAAGAAAGCTGAGAAGAGTGATGGAGATGGCAGAAGGTCTGAACTTGCGGTGGTTCATGAGGAAGCTCAGCATCAAGTTAATAATAAGATTTCACAGGTGTTGAGTGAAGGAGGGTCAAGTTGGAGAGATGTGGAGATTGGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.59

Weight (kDa)

6.24

Isoelectric Point (pI)

73.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50640 AT5G66800
fragaria_vesca	FvH4_1g15910
malus_domestica	MD02G1170900.v1.1 MD15G1282400.v1.1
prunus_persica	Prupe.7G134700_v2.0.a1
pyrus_communis	pycom02g13740
rosa_chinensis	RchiOBHm_Chr2g0105301
rosa_laevigata	RLG00000009823 RLG00000017414 RLG00000030156
rosa_multiflora	Rmu_sc0000329.1_g000019 Rmu_sc0001074.1_g000009 Rmu_sc0001407.1_g000013 Rmu_sc0003511.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138320 Rroxscaffold_6G00402960
rosa_rugosa	Rorug02G0127400
rosa_samantha	Rh2AG178000 Rh2BG186400 Rh2BG403700 Rh2CG182600 Rh2DG184000 Rh4DG108700 Rh6AG134000
rosa_wichuraiana	Rw2G013980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	160
Acc36I	ACCTGC	1 cut(s)	160
AccII	CGCG	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	126
AciI	CCGC	4 cut(s)	140, 268, 344, 461
AclWI	GGATC	1 cut(s)	321
AfaI	GTAC	1 cut(s)	23
AfeI	AGCGCT	1 cut(s)	205
AfiI	CCNNNNNNNGG	3 cut(s)	133, 310, 350
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	223, 244
AhdI	GACNNNNNGTC	1 cut(s)	331
AjnI	CCWGG	2 cut(s)	338, 381
AloI	GAACNNNNNNTCC	2 cut(s)	158, 190
AluBI	AGCT	4 cut(s)	214, 298, 422, 479
AluI	AGCT	4 cut(s)	214, 298, 422, 479
Alw21I	GWGCWC	2 cut(s)	216, 278
Alw26I	GTCTC	1 cut(s)	163
AlwI	GGATC	1 cut(s)	321
Aor13HI	TCCGGA	1 cut(s)	126
Aor51HI	AGCGCT	1 cut(s)	205
AoxI	GGCC	1 cut(s)	341
ApeKI	GCWGC	8 cut(s)	5, 143, 232, 235, 252, 255, 258, 298
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	399
BanII	GRGCYC	3 cut(s)	77, 216, 381
Bbv12I	GWGCWC	2 cut(s)	216, 278
BbvI	GCAGC	8 cut(s)	17, 130, 219, 222, 239, 267, 270, 285
BccI	CCATC	4 cut(s)	37, 119, 428, 434
BceAI	ACGGC	2 cut(s)	140, 265
BciT130I	CCWGG	2 cut(s)	340, 383
BcoDI	GTCTC	1 cut(s)	163
BfmI	CTRYAG	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	160
BlpI	GCTNAGC	1 cut(s)	480
Bme1390I	CCNGG	2 cut(s)	340, 383
Bme18I	GGWCC	1 cut(s)	399
BmeRI	GACNNNNNGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	380, 401
BmrFI	CCNGG	2 cut(s)	340, 383
BmsI	GCATC	2 cut(s)	97, 493
Bpu1102I	GCTNAGC	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	162, 304, 382
BsaWI	WCCGGW	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 310, 350
BseAI	TCCGGA	1 cut(s)	126
BseBI	CCWGG	2 cut(s)	340, 383
BseDI	CCNNGG	3 cut(s)	162, 304, 382
BseGI	GGATG	2 cut(s)	111, 335
BseLI	CCNNNNNNNGG	3 cut(s)	133, 310, 350
BseMII	CTCAG	3 cut(s)	301, 414, 494
BseRI	GAGGAG	6 cut(s)	39, 42, 51, 54, 151, 286
BseXI	GCAGC	8 cut(s)	17, 130, 219, 222, 239, 267, 270, 285
Bsh1236I	CGCG	1 cut(s)	268
BshFI	GGCC	1 cut(s)	343
BsiHKAI	GWGCWC	2 cut(s)	216, 278
BsiSI	CCGG	1 cut(s)	127
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	133, 310, 350
BsmAI	GTCTC	1 cut(s)	163
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	4 cut(s)	77, 216, 278, 381
Bsp13I	TCCGGA	1 cut(s)	126
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	313
Bsp1720I	GCTNAGC	1 cut(s)	480
BspACI	CCGC	4 cut(s)	140, 268, 344, 461
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	3 cut(s)	300, 415, 493
BspEI	TCCGGA	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	268
BspHI	TCATGA	2 cut(s)	316, 469
BspLI	GGNNCC	2 cut(s)	380, 401
BspMAI	CTGCAG	1 cut(s)	257
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	1 cut(s)	321
BspQI	GCTCTTC	1 cut(s)	221
BsrGI	TGTACA	1 cut(s)	21
BssECI	CCNNGG	3 cut(s)	162, 304, 382
BssMI	GATC	1 cut(s)	313
Bst2UI	CCWGG	2 cut(s)	340, 383
Bst6I	CTCTTC	4 cut(s)	60, 221, 386, 422
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	10, 230
BstDEI	CTNAG	4 cut(s)	13, 287, 423, 480
BstDSI	CCRYGG	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	111, 335
BstFNI	CGCG	1 cut(s)	268
BstH2I	RGCGCY	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	1 cut(s)	316
BstMAI	GTCTC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 258
BstNI	CCWGG	2 cut(s)	340, 383
BstNSI	RCATGY	1 cut(s)	22
BstSCI	CCNGG	2 cut(s)	338, 381
BstSFI	CTRYAG	1 cut(s)	253
BstUI	CGCG	1 cut(s)	268
BstV1I	GCAGC	8 cut(s)	17, 130, 219, 222, 239, 267, 270, 285
BsuRI	GGCC	1 cut(s)	343
BtgI	CCRYGG	1 cut(s)	304
BtsCI	GGATG	2 cut(s)	111, 335
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	2 cut(s)	10, 230
CciI	TCATGA	2 cut(s)	316, 469
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	399
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	5 cut(s)	19, 119, 196, 317, 470
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	4 cut(s)	13, 287, 423, 480
DpnI	GATC	1 cut(s)	315
DpnII	GATC	1 cut(s)	313
DriI	GACNNNNNGTC	1 cut(s)	331
Eam1104I	CTCTTC	4 cut(s)	60, 221, 386, 422
Eam1105I	GACNNNNNGTC	1 cut(s)	331
EarI	CTCTTC	4 cut(s)	60, 221, 386, 422
Ecl136II	GAGCTC	1 cut(s)	214
Eco24I	GRGCYC	3 cut(s)	77, 216, 381
Eco47I	GGWCC	1 cut(s)	399
Eco47III	AGCGCT	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	214
EcoICRI	GAGCTC	1 cut(s)	214
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRII	CCWGG	2 cut(s)	338, 381
EcoT38I	GRGCYC	3 cut(s)	77, 216, 381
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	5 cut(s)	22, 122, 199, 320, 473
FaiI	YATR	7 cut(s)	20, 39, 120, 197, 318, 471, 559
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	5 cut(s)	18, 118, 195, 316, 469
FokI	GGATG	2 cut(s)	98, 322
FriOI	GRGCYC	3 cut(s)	77, 216, 381
GlaI	GCGC	1 cut(s)	205
HaeII	RGCGCY	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	127
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	206
Hin1II	CATG	5 cut(s)	22, 122, 199, 320, 473
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	363
HindII	GTYRAC	1 cut(s)	363
HinfI	GANTC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	363
Hpy188I	TCNGA	4 cut(s)	34, 166, 290, 454
Hpy188III	TCNNGA	3 cut(s)	127, 317, 470
Hpy8I	GTNNAC	1 cut(s)	363
Hpy99I	CGWCG	1 cut(s)	361
HpyAV	CCTTC	7 cut(s)	97, 250, 343, 367, 381, 441, 515
HpyCH4IV	ACGT	1 cut(s)	327
HpyCH4V	TGCA	2 cut(s)	104, 255
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 258
HpyF3I	CTNAG	4 cut(s)	13, 287, 423, 480
HpySE526I	ACGT	1 cut(s)	327
Hsp92II	CATG	5 cut(s)	22, 122, 199, 320, 473
HspAI	GCGC	1 cut(s)	204
Kpn2I	TCCGGA	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	313
LguI	GCTCTTC	1 cut(s)	221
LmnI	GCTCC	5 cut(s)	52, 151, 273, 306, 384
Lsp1109I	GCAGC	8 cut(s)	17, 130, 219, 222, 239, 267, 270, 285
LweI	GCATC	2 cut(s)	97, 493
MaeII	ACGT	1 cut(s)	327
MalI	GATC	1 cut(s)	315
MboI	GATC	1 cut(s)	313
MboII	GAAGA	5 cut(s)	47, 208, 211, 403, 439
MhlI	GDGCHC	4 cut(s)	77, 216, 278, 381
MmeI	TCCRAC	2 cut(s)	210, 515
MroI	TCCGGA	1 cut(s)	126
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	321
MspI	CCGG	1 cut(s)	127
MspR9I	CCNGG	2 cut(s)	340, 383
MvaI	CCWGG	2 cut(s)	340, 383
MvnI	CGCG	1 cut(s)	268
MwoI	GCNNNNNNNGC	2 cut(s)	152, 258
NdeII	GATC	1 cut(s)	313
NlaIII	CATG	5 cut(s)	22, 122, 199, 320, 473
NlaIV	GGNNCC	2 cut(s)	380, 401
NspI	RCATGY	1 cut(s)	22
PagI	TCATGA	2 cut(s)	316, 469
PaqCI	CACCTGC	1 cut(s)	160
PciI	ACATGT	1 cut(s)	18
PciSI	GCTCTTC	1 cut(s)	221
PfeI	GAWTC	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	399
PscI	ACATGT	1 cut(s)	18
Psp124BI	GAGCTC	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	399
Psp6I	CCWGG	2 cut(s)	338, 381
PspGI	CCWGG	2 cut(s)	338, 381
PspN4I	GGNNCC	2 cut(s)	380, 401
PspPI	GGNCC	1 cut(s)	399
PspPPI	RGGWCCY	1 cut(s)	399
PstI	CTGCAG	1 cut(s)	257
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	321
SacI	GAGCTC	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	221
SaqAI	TTAA	1 cut(s)	492
Sau3AI	GATC	1 cut(s)	313
Sau96I	GGNCC	1 cut(s)	399
ScrFI	CCNGG	2 cut(s)	340, 383
SduI	GDGCHC	4 cut(s)	77, 216, 278, 381
SfaNI	GCATC	2 cut(s)	97, 493
SfcI	CTRYAG	1 cut(s)	253
SinI	GGWCC	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	321
SsiI	CCGC	4 cut(s)	140, 268, 344, 461
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	2 cut(s)	338, 381
TaiI	ACGT	1 cut(s)	330
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	2 cut(s)	143, 346
TfiI	GAWTC	1 cut(s)	81
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseI	GCWGC	8 cut(s)	5, 143, 232, 235, 252, 255, 258, 298
TspDTI	ATGAA	2 cut(s)	135, 458
TspGWI	ACGGA	1 cut(s)	169
VpaK11BI	GGWCC	1 cut(s)	399
XceI	RCATGY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.