Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006528

Physical Location & Seq

Genomic Coordinates Reverse (-)

20308066 .. 20319694

Gene Structure 11629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG134000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGATATGGATCGTCGATGGTGCCTTCAAGTCCTGACCCGCCGCATCTCCGCCCTACTCGAAGTCGATCCTCCATTCCACACCCTCTTTACCCCACCTCCCATCTCTACGCATCAACCCAGCAAATCCCTCGTCTTCAAATGGGGCCTCGTTGTTCCATCCCCAATTGGTCCGCCCAGATCCGTCATTTCTAGATGGCTTTTCCCCACTCCTCCGCCTCATCGGAGACTCCTCCCTATCCGCTCAATGAAACCTTGTACAAATCTGGGTTTTGCAGGTTCTTCCTTTCATGGCTACGGCTCCGGGCTTCTGGGGCTTCTAGGGCGGAAGAGGACTGCGCACATTGGGTCCAAGAAAGCTGAGAGAGGTAGTACATTCACTGTACAAAAATGTTTGCGGTTGAAGAACCCGTGCAATGCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000741 GO:0003674 GO:0003676 GO:0003677 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009555 GO:0009559 GO:0009561 GO:0009566 GO:0009567 GO:0009987 GO:0010197 GO:0016043 GO:0019953 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0051704 GO:0071840 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L21p

Protein Analysis

141

Amino Acids

15.73

Weight (kDa)

11.35

Isoelectric Point (pI)

64.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50640 AT5G66800
fragaria_vesca	FvH4_1g15910
malus_domestica	MD02G1170900.v1.1 MD15G1282400.v1.1
prunus_persica	Prupe.7G134700_v2.0.a1
pyrus_communis	pycom02g13740
rosa_chinensis	RchiOBHm_Chr2g0105301
rosa_laevigata	RLG00000009823 RLG00000017414 RLG00000030156
rosa_multiflora	Rmu_sc0000329.1_g000019 Rmu_sc0001074.1_g000009 Rmu_sc0001407.1_g000013 Rmu_sc0003511.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138320 Rroxscaffold_6G00402960
rosa_rugosa	Rorug02G0127400
rosa_samantha	Rh2AG178000 Rh2BG186400 Rh2BG403700 Rh2CG182600 Rh2DG184000 Rh4DG108700 Rh6AG134000
rosa_wichuraiana	Rw2G013980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	339
Acc36I	ACCTGC	1 cut(s)	266
AccB1I	GGYRCC	1 cut(s)	21
AccBSI	CCGCTC	1 cut(s)	243
AciI	CCGC	8 cut(s)	40, 43, 51, 173, 215, 241, 325, 397
AclWI	GGATC	3 cut(s)	18, 62, 174
AfaI	GTAC	3 cut(s)	259, 373, 384
AgsI	TTSAA	3 cut(s)	29, 139, 403
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
Alw26I	GTCTC	1 cut(s)	220
AlwI	GGATC	3 cut(s)	18, 62, 174
AoxI	GGCC	1 cut(s)	145
ArsI	GACNNNNNNTTYG	2 cut(s)	117, 149
AspLEI	GCGC	1 cut(s)	340
AspS9I	GGNCC	3 cut(s)	145, 170, 348
AsuC2I	CCSGG	1 cut(s)	304
AvaII	GGWCC	2 cut(s)	170, 348
BanI	GGYRCC	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	127
BccI	CCATC	4 cut(s)	12, 110, 166, 189
BceAI	ACGGC	1 cut(s)	313
BcgI	CGANNNNNNTGC	2 cut(s)	112, 146
BcnI	CCSGG	1 cut(s)	304
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	2 cut(s)	192, 320
BfuAI	ACCTGC	1 cut(s)	266
BisI	GCNGC	1 cut(s)	43
BlsI	GCNGC	1 cut(s)	44
Bme1390I	CCNGG	1 cut(s)	304
Bme18I	GGWCC	2 cut(s)	170, 348
BmgT120I	GGNCC	3 cut(s)	145, 170, 348
BmiI	GGNNCC	4 cut(s)	23, 146, 301, 349
BmrFI	CCNGG	1 cut(s)	304
BmsI	GCATC	2 cut(s)	54, 121
BpiI	GAAGAC	1 cut(s)	127
BpuMI	CCSGG	1 cut(s)	304
BsaBI	GATNNNNATC	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse3DI	GCAATG	1 cut(s)	421
Bse8I	GATNNNNATC	1 cut(s)	9
BseGI	GGATG	1 cut(s)	158
BseJI	GATNNNNATC	1 cut(s)	9
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	1 cut(s)	351
BseRI	GAGGAG	2 cut(s)	201, 221
BseYI	CCCAGC	1 cut(s)	119
BshFI	GGCC	1 cut(s)	147
BshNI	GGYRCC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	220
BsnI	GGCC	1 cut(s)	147
Bsp1407I	TGTACA	2 cut(s)	257, 382
Bsp143I	GATC	3 cut(s)	10, 67, 179
BspACI	CCGC	8 cut(s)	40, 43, 51, 173, 215, 241, 325, 397
BspANI	GGCC	1 cut(s)	147
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	4 cut(s)	23, 146, 301, 349
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	3 cut(s)	18, 62, 174
BspT107I	GGYRCC	1 cut(s)	21
BsrBI	CCGCTC	1 cut(s)	243
BsrDI	GCAATG	1 cut(s)	421
BsrGI	TGTACA	2 cut(s)	257, 382
BssMI	GATC	3 cut(s)	10, 67, 179
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	323
BstAUI	TGTACA	2 cut(s)	257, 382
BstDEI	CTNAG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	158
BstHHI	GCGC	1 cut(s)	340
BstKTI	GATC	3 cut(s)	13, 70, 182
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	3 cut(s)	10, 67, 179
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 322
BstSCI	CCNGG	1 cut(s)	302
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BsuRI	GGCC	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	158
BtsIMutI	CAGTG	1 cut(s)	378
BveI	ACCTGC	1 cut(s)	266
CfoI	GCGC	1 cut(s)	340
Cfr13I	GGNCC	3 cut(s)	145, 170, 348
Csp6I	GTAC	3 cut(s)	258, 372, 383
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	7 cut(s)	147, 199, 294, 300, 307, 316, 359
CviKI_1	RGCY	7 cut(s)	147, 199, 294, 300, 307, 316, 359
CviQI	GTAC	3 cut(s)	258, 372, 383
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	3 cut(s)	12, 69, 181
DpnII	GATC	3 cut(s)	10, 67, 179
Eam1104I	CTCTTC	1 cut(s)	323
EarI	CTCTTC	1 cut(s)	323
EciI	GGCGGA	4 cut(s)	40, 162, 204, 340
Eco47I	GGWCC	2 cut(s)	170, 348
EcoO109I	RGGNCCY	1 cut(s)	145
FaeI	CATG	1 cut(s)	293
FaiI	YATR	2 cut(s)	8, 291
FatI	CATG	1 cut(s)	289
FauI	CCCGC	1 cut(s)	47
Fnu4HI	GCNGC	1 cut(s)	43
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	1 cut(s)	43
FspBI	CTAG	2 cut(s)	192, 320
FspI	TGCGCA	1 cut(s)	339
GlaI	GCGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	43
GsaI	CCCAGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	147
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	1 cut(s)	340
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	338
HinP1I	GCGC	1 cut(s)	338
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	1 cut(s)	303
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	2 cut(s)	34, 192
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4V	TGCA	2 cut(s)	275, 414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 322
HpyF3I	CTNAG	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	1 cut(s)	338
Kzo9I	GATC	3 cut(s)	10, 67, 179
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	7 cut(s)	47, 133, 190, 251, 261, 296, 316
LweI	GCATC	2 cut(s)	54, 121
MaeI	CTAG	2 cut(s)	192, 320
MalI	GATC	3 cut(s)	12, 69, 181
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	3 cut(s)	10, 67, 179
MboII	GAAGA	4 cut(s)	127, 273, 340, 415
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	179
MluCI	AATT	2 cut(s)	165, 421
MlyI	GAGTC	1 cut(s)	222
MseI	TTAA	1 cut(s)	424
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	304
MunI	CAATTG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	313, 322
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	3 cut(s)	10, 67, 179
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	4 cut(s)	23, 146, 301, 349
NsbI	TGCGCA	1 cut(s)	339
PkrI	GCNGC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PspFI	CCCAGC	1 cut(s)	119
PspN4I	GGNNCC	4 cut(s)	23, 146, 301, 349
PspPI	GGNCC	3 cut(s)	145, 170, 348
PsuI	RGATCY	1 cut(s)	179
RsaI	GTAC	3 cut(s)	259, 373, 384
RsaNI	GTAC	3 cut(s)	258, 372, 383
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	1 cut(s)	43
Sau3AI	GATC	3 cut(s)	10, 67, 179
Sau96I	GGNCC	3 cut(s)	145, 170, 348
SchI	GAGTC	1 cut(s)	222
ScrFI	CCNGG	1 cut(s)	304
SetI	ASST	5 cut(s)	100, 256, 280, 361, 370
SfaNI	GCATC	2 cut(s)	54, 121
SinI	GGWCC	2 cut(s)	170, 348
Sse9I	AATT	2 cut(s)	165, 421
SsiI	CCGC	8 cut(s)	40, 43, 51, 173, 215, 241, 325, 397
SspMI	CTAG	2 cut(s)	192, 320
StyD4I	CCNGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	382
TaqI	TCGA	3 cut(s)	16, 60, 66
TasI	AATT	2 cut(s)	165, 421
TatI	WGTACW	3 cut(s)	257, 371, 382
TauI	GCSGC	1 cut(s)	45
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	1 cut(s)	385
TspDTI	ATGAA	2 cut(s)	263, 278
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	2 cut(s)	170, 348
XbaI	TCTAGA	1 cut(s)	191
XspI	CTAG	2 cut(s)	192, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.