Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006528

Physical Location & Seq

Genomic Coordinates Reverse (-)

10327070 .. 10327872

Gene Structure 803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCAGCCTGCTTAGAGATGTACAACTCATCAGAGCATAAGCATAAGTTCGCTCCTCCTCTTCCTCCTCCGATGAGCCCAAGAATCTCCTTCTCCAATGACTTTGCAGATGCCATCCACCATGAAATCCGGAGGGAGGTGGCGGCTGCTCCGCCTGCTGTCTCCTCAGATTTTGAGTTCTCTGTTTCCAACTACTCCATGATGAGCGCTGATGAGCTCTTCTCCAAGGGCAGGCTGCTGCCCTTCAAGGACGGCTGCAGCAGCCAGACGCGGAGGAGCACCACCACTCTCAGAGATGAGCTGCTCCATGGGGAGGATCACGATGATGACGTCTCGTCATCCAGACCGCCGAAGGGTGCAAGGTGGAAGGGGCTCCTCGGAAGGAAGAGTAGGTCCCACATTGTGTCCAAGAAAGCTGAGAAGAGTGACGGAGATGGCAGAAGGTCTGGACTTGCGGTGGTTCATGAGGAAGCTCAGCATCATGCTAATATTAAGACATCACAGGAGGTGTTGGACGAAGGAGGGTCAAGTTGGAGAGATGTGGAGATTGGAATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

186

Amino Acids

20.47

Weight (kDa)

6.36

Isoelectric Point (pI)

73.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006528)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50640 AT5G66800
fragaria_vesca	FvH4_1g15910
malus_domestica	MD02G1170900.v1.1 MD15G1282400.v1.1
prunus_persica	Prupe.7G134700_v2.0.a1
pyrus_communis	pycom02g13740
rosa_chinensis	RchiOBHm_Chr2g0105301
rosa_laevigata	RLG00000009823 RLG00000017414 RLG00000030156
rosa_multiflora	Rmu_sc0000329.1_g000019 Rmu_sc0001074.1_g000009 Rmu_sc0001407.1_g000013 Rmu_sc0003511.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138320 Rroxscaffold_6G00402960
rosa_rugosa	Rorug02G0127400
rosa_samantha	Rh2AG178000 Rh2BG186400 Rh2BG403700 Rh2CG182600 Rh2DG184000 Rh4DG108700 Rh6AG134000
rosa_wichuraiana	Rw2G013980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	333
AccII	CGCG	1 cut(s)	271
AccIII	TCCGGA	1 cut(s)	129
AciI	CCGC	5 cut(s)	143, 152, 271, 347, 455
AclWI	GGATC	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	330
AdeI	CACNNNGTG	1 cut(s)	403
AfaI	GTAC	1 cut(s)	23
AfeI	AGCGCT	1 cut(s)	208
AfiI	CCNNNNNNNGG	4 cut(s)	136, 231, 313, 353
AgsI	TTSAA	1 cut(s)	247
AhdI	GACNNNNNGTC	1 cut(s)	334
AluBI	AGCT	4 cut(s)	217, 301, 416, 473
AluI	AGCT	4 cut(s)	217, 301, 416, 473
Alw21I	GWGCWC	2 cut(s)	219, 281
Alw26I	GTCTC	2 cut(s)	166, 337
AlwI	GGATC	1 cut(s)	324
Aor13HI	TCCGGA	1 cut(s)	129
Aor51HI	AGCGCT	1 cut(s)	208
ApeKI	GCWGC	8 cut(s)	5, 146, 235, 238, 255, 258, 261, 301
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	393
BanII	GRGCYC	3 cut(s)	80, 219, 375
Bbv12I	GWGCWC	2 cut(s)	219, 281
BbvI	GCAGC	8 cut(s)	17, 133, 222, 225, 242, 270, 273, 288
BccI	CCATC	2 cut(s)	122, 428
BceAI	ACGGC	1 cut(s)	268
BcoDI	GTCTC	2 cut(s)	166, 337
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	210
BisI	GCNGC	9 cut(s)	6, 144, 147, 236, 239, 256, 259, 262, 302
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	9 cut(s)	7, 145, 148, 237, 240, 257, 260, 263, 303
Bme18I	GGWCC	1 cut(s)	393
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmgT120I	GGNCC	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	374, 395
BmsI	GCATC	2 cut(s)	100, 487
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
Bpu1102I	GCTNAGC	1 cut(s)	474
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	3 cut(s)	225, 307, 376
BsaWI	WCCGGW	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	4 cut(s)	136, 231, 313, 353
BseAI	TCCGGA	1 cut(s)	129
BseDI	CCNNGG	3 cut(s)	225, 307, 376
BseGI	GGATG	2 cut(s)	114, 338
BseLI	CCNNNNNNNGG	4 cut(s)	136, 231, 313, 353
BseMII	CTCAG	4 cut(s)	180, 304, 408, 488
BseRI	GAGGAG	6 cut(s)	45, 48, 57, 154, 289, 365
BseXI	GCAGC	8 cut(s)	17, 133, 222, 225, 242, 270, 273, 288
Bsh1236I	CGCG	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	219, 281
BsiSI	CCGG	1 cut(s)	130
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	4 cut(s)	136, 231, 313, 353
BsmAI	GTCTC	2 cut(s)	166, 337
BsmBI	CGTCTC	1 cut(s)	337
BsmFI	GGGAC	1 cut(s)	379
Bsp1286I	GDGCHC	4 cut(s)	80, 219, 281, 375
Bsp13I	TCCGGA	1 cut(s)	129
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	316
Bsp1720I	GCTNAGC	1 cut(s)	474
Bsp19I	CCATGG	1 cut(s)	307
BspACI	CCGC	5 cut(s)	143, 152, 271, 347, 455
BspCNI	CTCAG	4 cut(s)	179, 303, 409, 487
BspEI	TCCGGA	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	2 cut(s)	374, 395
BspMAI	CTGCAG	1 cut(s)	260
BspPI	GGATC	1 cut(s)	324
BspQI	GCTCTTC	1 cut(s)	224
BsrGI	TGTACA	1 cut(s)	21
BssECI	CCNNGG	3 cut(s)	225, 307, 376
BssMI	GATC	1 cut(s)	316
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	2 cut(s)	225, 307
Bst6I	CTCTTC	4 cut(s)	66, 224, 380, 416
BstACI	GRCGYC	1 cut(s)	330
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	10, 156, 233
BstDEI	CTNAG	5 cut(s)	13, 166, 290, 417, 474
BstDSI	CCRYGG	1 cut(s)	307
BstF5I	GGATG	2 cut(s)	114, 338
BstFNI	CGCG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	1 cut(s)	319
BstMAI	GTCTC	2 cut(s)	166, 337
BstMBI	GATC	1 cut(s)	316
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 261
BstSFI	CTRYAG	1 cut(s)	256
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	8 cut(s)	17, 133, 222, 225, 242, 270, 273, 288
BtgI	CCRYGG	1 cut(s)	307
BtsCI	GGATG	2 cut(s)	114, 338
Cac8I	GCNNGC	3 cut(s)	10, 156, 233
CciI	TCATGA	1 cut(s)	463
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	393
CseI	GACGC	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	5 cut(s)	122, 199, 308, 464, 482
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	5 cut(s)	13, 166, 290, 417, 474
DpnI	GATC	1 cut(s)	318
DpnII	GATC	1 cut(s)	316
DraIII	CACNNNGTG	1 cut(s)	403
DriI	GACNNNNNGTC	1 cut(s)	334
Eam1104I	CTCTTC	4 cut(s)	66, 224, 380, 416
Eam1105I	GACNNNNNGTC	1 cut(s)	334
EarI	CTCTTC	4 cut(s)	66, 224, 380, 416
EciI	GGCGGA	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	2 cut(s)	225, 307
Eco24I	GRGCYC	3 cut(s)	80, 219, 375
Eco47I	GGWCC	1 cut(s)	393
Eco47III	AGCGCT	1 cut(s)	208
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	393
EcoT14I	CCWWGG	2 cut(s)	225, 307
EcoT38I	GRGCYC	3 cut(s)	80, 219, 375
ErhI	CCWWGG	2 cut(s)	225, 307
Esp3I	CGTCTC	1 cut(s)	337
FaeI	CATG	5 cut(s)	125, 202, 311, 467, 485
FaiI	YATR	8 cut(s)	39, 45, 123, 200, 309, 465, 483, 556
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	5 cut(s)	121, 198, 307, 463, 481
Fnu4HI	GCNGC	9 cut(s)	6, 144, 147, 236, 239, 256, 259, 262, 302
FokI	GGATG	2 cut(s)	101, 325
FriOI	GRGCYC	3 cut(s)	80, 219, 375
Fsp4HI	GCNGC	9 cut(s)	6, 144, 147, 236, 239, 256, 259, 262, 302
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	9 cut(s)	6, 144, 147, 236, 239, 256, 259, 262, 302
HaeII	RGCGCY	1 cut(s)	210
HapII	CCGG	1 cut(s)	130
HgaI	GACGC	1 cut(s)	277
HhaI	GCGC	1 cut(s)	209
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	5 cut(s)	125, 202, 311, 467, 485
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	1 cut(s)	130
Hpy188I	TCNGA	5 cut(s)	34, 72, 169, 293, 380
Hpy188III	TCNNGA	5 cut(s)	130, 320, 342, 447, 464
HpyAV	CCTTC	7 cut(s)	100, 253, 346, 361, 375, 435, 512
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	3 cut(s)	107, 258, 359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 261
HpyF3I	CTNAG	5 cut(s)	13, 166, 290, 417, 474
HpySE526I	ACGT	1 cut(s)	330
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	5 cut(s)	125, 202, 311, 467, 485
HspAI	GCGC	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	129
Kzo9I	GATC	1 cut(s)	316
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	5 cut(s)	58, 154, 276, 309, 378
LpnPI	CCDG	8 cut(s)	22, 143, 168, 217, 278, 355, 432, 488
Lsp1109I	GCAGC	8 cut(s)	17, 133, 222, 225, 242, 270, 273, 288
LweI	GCATC	2 cut(s)	100, 487
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	425
MalI	GATC	1 cut(s)	318
MboI	GATC	1 cut(s)	316
MboII	GAAGA	4 cut(s)	53, 211, 397, 433
MhlI	GDGCHC	4 cut(s)	80, 219, 281, 375
MmeI	TCCRAC	3 cut(s)	213, 492, 512
MroI	TCCGGA	1 cut(s)	129
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	130
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	2 cut(s)	155, 261
NcoI	CCATGG	1 cut(s)	307
NdeII	GATC	1 cut(s)	316
NlaIII	CATG	5 cut(s)	125, 202, 311, 467, 485
NlaIV	GGNNCC	2 cut(s)	374, 395
NmuCI	GTSAC	1 cut(s)	425
PagI	TCATGA	1 cut(s)	463
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	9 cut(s)	7, 145, 148, 237, 240, 257, 260, 263, 303
PpuMI	RGGWCCY	1 cut(s)	393
Psp124BI	GAGCTC	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	374, 395
PspPI	GGNCC	1 cut(s)	393
PspPPI	RGGWCCY	1 cut(s)	393
PstI	CTGCAG	1 cut(s)	260
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
RseI	CAYNNNNRTG	1 cut(s)	324
SacI	GAGCTC	1 cut(s)	219
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	9 cut(s)	6, 144, 147, 236, 239, 256, 259, 262, 302
Sau3AI	GATC	1 cut(s)	316
Sau96I	GGNCC	1 cut(s)	393
SduI	GDGCHC	4 cut(s)	80, 219, 281, 375
SfaNI	GCATC	2 cut(s)	100, 487
SfcI	CTRYAG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	1 cut(s)	324
SsiI	CCGC	5 cut(s)	143, 152, 271, 347, 455
SspI	AATATT	1 cut(s)	490
SstI	GAGCTC	1 cut(s)	219
StyI	CCWWGG	2 cut(s)	225, 307
TaiI	ACGT	1 cut(s)	333
TatI	WGTACW	1 cut(s)	21
TauI	GCSGC	1 cut(s)	146
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	8 cut(s)	5, 146, 235, 238, 255, 258, 261, 301
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	138, 452
TspGWI	ACGGA	1 cut(s)	444
VpaK11BI	GGWCC	1 cut(s)	393
ZraI	GACGTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.