Prupe.7G134700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0006528
Physical Location & Seq
Forward (+)
15245655 .. 15246892
1238 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G134700.1

Sequence Viewer

Length: 576 bp
ATGGCCTGCTTAGACATGTACAACTCAGAGCATAAGGGTCATGGTGGTCATCATCCATTTGCTCCAATGAGCCCAAGAATCTCCTTCTCTAATGATTTTGCAGATGCCCAACATGCCATCAAGCATGAAAGGAGCTCCAGAGAAGCTCCAGTTTCCTCAGATTTTGAGTTCTCAGTGACCAACTATTCGATGATGAGCGCTGATGAGCTCTTCTGTAAGGGAAGGTTGCTGCCTTTCAAGGACAGCTGCACCAGCAGCAGCAGCAGCAAACAGATGCAGAGGAGCACTACCACTCTCAGAGATGAGCTTCTTCATGGGGAGGATCATGATGATGAAGTGTCATCCAGGCCACCAAAGGGGTCATCATCATCAACAAGATGGAAGGGGCTTCTGGGCAGGAAGAGGGCCCACATTGGCTCCAAGAAAGCTCACAGGAATGATGGGTCTGTGGATGGTAGGAGTTCTGGTCTTGTGGTGGTGCATGAGGAACCCCAACATCATGTTAATAATCAGACTTCACAGGAGGTCTTGAATGAAGGAGGGTCAAGTTGGAGAGATGTGGAGATTGGAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.16

Weight (kDa)

6.49

Isoelectric Point (pI)

64.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 330
AfaI GTAC 1 cut(s) 20
AfeI AGCGCT 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 356
AflIII ACRYGT 1 cut(s) 15
AgsI TTSAA 2 cut(s) 238, 532
AjnI CCWGG 1 cut(s) 344
AluBI AGCT 6 cut(s) 135, 146, 208, 246, 307, 428
AluI AGCT 6 cut(s) 135, 146, 208, 246, 307, 428
Alw21I GWGCWC 3 cut(s) 137, 210, 287
AlwI GGATC 1 cut(s) 330
Aor51HI AGCGCT 1 cut(s) 199
AoxI GGCC 3 cut(s) 3, 347, 405
ApaI GGGCCC 1 cut(s) 409
ApeKI GCWGC 6 cut(s) 229, 246, 255, 258, 261, 264
ArsI GACNNNNNNTTYG 2 cut(s) 169, 201
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 2 cut(s) 405, 406
BaeGI GKGCMC 1 cut(s) 409
BanII GRGCYC 4 cut(s) 74, 137, 210, 409
Bbv12I GWGCWC 3 cut(s) 137, 210, 287
BbvI GCAGC 6 cut(s) 216, 233, 267, 270, 273, 276
BccI CCATC 4 cut(s) 125, 372, 434, 446
BciT130I CCWGG 1 cut(s) 346
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 6 cut(s) 230, 247, 256, 259, 262, 265
BlsI GCNGC 6 cut(s) 231, 248, 257, 260, 263, 266
Bme1390I CCNGG 1 cut(s) 346
BmgT120I GGNCC 2 cut(s) 405, 406
BmiI GGNNCC 3 cut(s) 407, 418, 489
BmrFI CCNGG 1 cut(s) 346
BmsI GCATC 2 cut(s) 94, 264
BpmI CTGGAG 2 cut(s) 121, 132
BsaXI ACNNNNNCTCC 4 cut(s) 401, 431, 451, 481
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 1 cut(s) 149
BseBI CCWGG 1 cut(s) 346
BseGI GGATG 3 cut(s) 52, 341, 457
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 4 cut(s) 39, 171, 186, 310
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 295
BseSI GKGCMC 1 cut(s) 409
BseXI GCAGC 6 cut(s) 216, 233, 267, 270, 273, 276
BsgI GTGCAG 1 cut(s) 232
BshFI GGCC 3 cut(s) 5, 349, 407
BsiHKAI GWGCWC 3 cut(s) 137, 210, 287
BslI CCNNNNNNNGG 1 cut(s) 356
BsnI GGCC 3 cut(s) 5, 349, 407
Bsp120I GGGCCC 1 cut(s) 405
Bsp1286I GDGCHC 5 cut(s) 74, 137, 210, 287, 409
Bsp1407I TGTACA 1 cut(s) 18
Bsp143I GATC 1 cut(s) 322
BspANI GGCC 3 cut(s) 5, 349, 407
BspCNI CTCAG 4 cut(s) 38, 170, 185, 309
BspHI TCATGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 407, 418, 489
BspPI GGATC 1 cut(s) 330
BspQI GCTCTTC 1 cut(s) 215
BsrGI TGTACA 1 cut(s) 18
BsrI ACTGG 1 cut(s) 149
BssMI GATC 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 346
Bst6I CTCTTC 2 cut(s) 215, 395
BstAUI TGTACA 1 cut(s) 18
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 5 cut(s) 10, 25, 157, 172, 296
BstF5I GGATG 3 cut(s) 52, 341, 457
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 5 cut(s) 113, 252, 255, 261, 264
BstNI CCWGG 1 cut(s) 346
BstNSI RCATGY 2 cut(s) 19, 116
BstSCI CCNGG 1 cut(s) 344
BstSLI GKGCMC 1 cut(s) 409
BstV1I GCAGC 6 cut(s) 216, 233, 267, 270, 273, 276
BsuRI GGCC 3 cut(s) 5, 349, 407
BtsCI GGATG 3 cut(s) 52, 341, 457
BtsIMutI CAGTG 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 7
CciI TCATGA 1 cut(s) 325
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 2 cut(s) 405, 406
Csp6I GTAC 1 cut(s) 19
CviAII CATG 8 cut(s) 16, 41, 113, 125, 314, 326, 482, 500
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 5 cut(s) 10, 25, 157, 172, 296
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 215, 395
EarI CTCTTC 2 cut(s) 215, 395
Ecl136II GAGCTC 2 cut(s) 135, 208
Eco24I GRGCYC 4 cut(s) 74, 137, 210, 409
Eco47III AGCGCT 1 cut(s) 199
Eco53kI GAGCTC 2 cut(s) 135, 208
EcoICRI GAGCTC 2 cut(s) 135, 208
EcoO109I RGGNCCY 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 344
EcoT38I GRGCYC 4 cut(s) 74, 137, 210, 409
FaeI CATG 8 cut(s) 19, 44, 116, 128, 317, 329, 485, 503
FatI CATG 8 cut(s) 15, 40, 112, 124, 313, 325, 481, 499
Fnu4HI GCNGC 6 cut(s) 230, 247, 256, 259, 262, 265
FokI GGATG 3 cut(s) 39, 328, 464
FriOI GRGCYC 4 cut(s) 74, 137, 210, 409
Fsp4HI GCNGC 6 cut(s) 230, 247, 256, 259, 262, 265
GlaI GCGC 1 cut(s) 199
GluI GCNGC 6 cut(s) 230, 247, 256, 259, 262, 265
GsuI CTGGAG 2 cut(s) 121, 132
HaeII RGCGCY 1 cut(s) 201
HaeIII GGCC 3 cut(s) 5, 349, 407
HhaI GCGC 1 cut(s) 200
Hin1II CATG 8 cut(s) 19, 44, 116, 128, 317, 329, 485, 503
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 1 cut(s) 78
Hpy188I TCNGA 4 cut(s) 28, 160, 299, 513
Hpy188III TCNNGA 3 cut(s) 138, 326, 529
HpyAV CCTTC 4 cut(s) 94, 216, 376, 530
HpyCH4V TGCA 4 cut(s) 101, 249, 277, 481
HpyF10VI GCNNNNNNNGC 5 cut(s) 113, 252, 255, 261, 264
HpyF3I CTNAG 5 cut(s) 10, 25, 157, 172, 296
Hsp92II CATG 8 cut(s) 19, 44, 116, 128, 317, 329, 485, 503
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 1 cut(s) 322
LguI GCTCTTC 1 cut(s) 215
LmnI GCTCC 6 cut(s) 67, 132, 140, 151, 282, 422
Lsp1109I GCAGC 6 cut(s) 216, 233, 267, 270, 273, 276
LweI GCATC 2 cut(s) 94, 264
MaeIII GTNAC 1 cut(s) 175
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 3 cut(s) 202, 302, 412
MhlI GDGCHC 5 cut(s) 74, 137, 210, 287, 409
MmeI TCCRAC 1 cut(s) 530
MnlI CCTC 7 cut(s) 166, 273, 313, 396, 478, 517, 533
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 2 cut(s) 330, 435
MspA1I CMGCKG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 346
MvaI CCWGG 1 cut(s) 346
MwoI GCNNNNNNNGC 5 cut(s) 113, 252, 255, 261, 264
NdeII GATC 1 cut(s) 322
NlaIII CATG 8 cut(s) 19, 44, 116, 128, 317, 329, 485, 503
NlaIV GGNNCC 3 cut(s) 407, 418, 489
NmuCI GTSAC 1 cut(s) 175
NspI RCATGY 2 cut(s) 19, 116
PagI TCATGA 1 cut(s) 325
PciI ACATGT 1 cut(s) 15
PciSI GCTCTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 78
PkrI GCNGC 6 cut(s) 231, 248, 257, 260, 263, 266
PscI ACATGT 1 cut(s) 15
Psp124BI GAGCTC 2 cut(s) 137, 210
Psp6I CCWGG 1 cut(s) 344
PspGI CCWGG 1 cut(s) 344
PspN4I GGNNCC 3 cut(s) 407, 418, 489
PspOMI GGGCCC 1 cut(s) 405
PspPI GGNCC 2 cut(s) 405, 406
PvuII CAGCTG 1 cut(s) 246
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 2 cut(s) 330, 435
SacI GAGCTC 2 cut(s) 137, 210
SapI GCTCTTC 1 cut(s) 215
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 6 cut(s) 230, 247, 256, 259, 262, 265
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 2 cut(s) 405, 406
ScrFI CCNGG 1 cut(s) 346
SduI GDGCHC 5 cut(s) 74, 137, 210, 287, 409
SetI ASST 8 cut(s) 137, 148, 210, 227, 248, 309, 430, 528
SfaNI GCATC 2 cut(s) 94, 264
SmiMI CAYNNNNRTG 2 cut(s) 330, 435
SstI GAGCTC 2 cut(s) 137, 210
StyD4I CCNGG 1 cut(s) 344
TaqI TCGA 1 cut(s) 188
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 1 cut(s) 78
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 175
TseI GCWGC 6 cut(s) 229, 246, 255, 258, 261, 264
Tsp45I GTSAC 1 cut(s) 175
TspDTI ATGAA 4 cut(s) 141, 302, 348, 549
TspRI CASTG 1 cut(s) 180
XceI RCATGY 2 cut(s) 19, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.