Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006907

Physical Location & Seq

Genomic Coordinates Reverse (-)

11994783 .. 11995757

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19790.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGCTGGGGATCTTGGTCGGGATGGTGGGAAAAGGAGTAGCTGGAAGTGGAGGAAGTGTCACCTTAGGAACCGTGCTTGGAAATGTTGGCAAGGTAGGTTTTGGCAGAGATGGGATTTGGGTGCTTGGCAATGGTGGCAATGTGGTTTTTGGCAGAGGTGGGATGGGGTTGCTGGTTGGGAAGGTTGGCAATGTTGGTTTAGGCAGTCCTGTTGGCAAGGTAGGCAGTGGAGGCAACGTAACCTTGGGAAGAGACGGAATTATAGGCTGTGGTAATGCTGGAGCAGCCTGCAGAAGGTGTCGAGCCGCGAAGCTCGTATTGATGCTAGACAAGCACAATGCCGCTACCATCATGGAAACCAGGAAGCAATGCTGGAAACCTGCCATGTTGGTTCAAAACAAGAGCAGAAAAATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

13.79

Weight (kDa)

10.79

Isoelectric Point (pI)

12.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19790 FvH4_3g12580 FvH4_7g18920 FvH4_7g19270
prunus_persica	Prupe.6G198400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363111 RchiOBHm_Chr2g0111361
rosa_laevigata	RLG00000017889 RLG00000027593 RLG00000027594 RLG00000027617
rosa_roxburghii	Rroxscaffold_4G00293710
rosa_rugosa	Rorug01G0301900 Rorug01G0304500 Rorug01G0304600 Rorug02G0173100
rosa_samantha	Rh1AG310800 Rh1BG273900 Rh1BG276900 Rh1CG293500 Rh1DG304700 Rh1DG307500 Rh2AG226200 Rh2BG238000 Rh2CG229300 Rh2DG233700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	388
AccII	CGCG	1 cut(s)	308
AciI	CCGC	2 cut(s)	306, 342
AclWI	GGATC	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	294
AgsI	TTSAA	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	359
AluBI	AGCT	2 cut(s)	41, 313
AluI	AGCT	2 cut(s)	41, 313
Alw26I	GTCTC	1 cut(s)	246
AlwI	GGATC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	284
AsuHPI	GGTGA	1 cut(s)	52
AxyI	CCTNAGG	1 cut(s)	64
BbvI	GCAGC	1 cut(s)	296
BccI	CCATC	4 cut(s)	16, 104, 157, 356
BciT130I	CCWGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	246
BfaI	CTAG	2 cut(s)	326, 415
BfmI	CTRYAG	1 cut(s)	289
BfuAI	ACCTGC	1 cut(s)	388
BisI	GCNGC	3 cut(s)	285, 306, 342
BlsI	GCNGC	3 cut(s)	286, 307, 343
Bme1390I	CCNGG	1 cut(s)	361
BmiI	GGNNCC	1 cut(s)	70
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	312
BpmI	CTGGAG	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse21I	CCTNAGG	1 cut(s)	64
Bse3DI	GCAATG	4 cut(s)	136, 145, 196, 374
BseBI	CCWGG	1 cut(s)	361
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	27, 168
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	4 cut(s)	136, 145, 196, 374
BseXI	GCAGC	1 cut(s)	296
BseYI	CCCAGC	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	308
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	246
BsmBI	CGTCTC	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	9
BspACI	CCGC	2 cut(s)	306, 342
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	70
BspMAI	CTGCAG	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	388
BspPI	GGATC	1 cut(s)	17
BsrDI	GCAATG	4 cut(s)	136, 145, 196, 374
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	361
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	64
BstENI	CCTNNNNNAGG	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	27, 168
BstFNI	CGCG	1 cut(s)	308
BstKTI	GATC	1 cut(s)	12
BstMAI	GTCTC	1 cut(s)	246
BstMBI	GATC	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 222, 231, 284, 331
BstNI	CCWGG	1 cut(s)	361
BstSCI	CCNGG	1 cut(s)	359
BstSFI	CTRYAG	1 cut(s)	289
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	296
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
Bsu36I	CCTNAGG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	27, 168
BtsI	GCAGTG	1 cut(s)	232
BtsIMutI	CAGTG	1 cut(s)	232
BveI	ACCTGC	1 cut(s)	388
Cac8I	GCNNGC	1 cut(s)	289
CviAII	CATG	2 cut(s)	352, 385
CviJI	RGCY	5 cut(s)	41, 267, 287, 305, 313
CviKI_1	RGCY	5 cut(s)	41, 267, 287, 305, 313
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	1 cut(s)	11
DpnII	GATC	1 cut(s)	9
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
Eco130I	CCWWGG	1 cut(s)	243
Eco81I	CCTNAGG	1 cut(s)	64
EcoNI	CCTNNNNNAGG	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	2 cut(s)	355, 388
FaiI	YATR	3 cut(s)	263, 353, 386
FatI	CATG	2 cut(s)	351, 384
Fnu4HI	GCNGC	3 cut(s)	285, 306, 342
FokI	GGATG	2 cut(s)	34, 175
Fsp4HI	GCNGC	3 cut(s)	285, 306, 342
FspBI	CTAG	2 cut(s)	326, 415
GluI	GCNGC	3 cut(s)	285, 306, 342
GsaI	CCCAGC	1 cut(s)	8
GsuI	CTGGAG	1 cut(s)	300
Hin1II	CATG	2 cut(s)	355, 388
HphI	GGTGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	175, 288
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 222, 231, 284, 331
HpyF3I	CTNAG	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	2 cut(s)	355, 388
Kzo9I	GATC	1 cut(s)	9
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	9 cut(s)	27, 158, 222, 264, 301, 346, 358, 373, 393
Lsp1109I	GCAGC	1 cut(s)	296
LweI	GCATC	1 cut(s)	312
MaeI	CTAG	2 cut(s)	326, 415
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	58, 238
MalI	GATC	1 cut(s)	11
MboI	GATC	1 cut(s)	9
MboII	GAAGA	1 cut(s)	261
MflI	RGATCY	1 cut(s)	9
MluCI	AATT	1 cut(s)	258
MnlI	CCTC	3 cut(s)	44, 149, 224
MspR9I	CCNGG	1 cut(s)	361
MvaI	CCWGG	1 cut(s)	361
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	5 cut(s)	135, 222, 231, 284, 331
NdeII	GATC	1 cut(s)	9
NlaIII	CATG	2 cut(s)	355, 388
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	286, 307, 343
Psp6I	CCWGG	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	359
PspN4I	GGNNCC	1 cut(s)	70
PstI	CTGCAG	1 cut(s)	293
PsuI	RGATCY	1 cut(s)	9
SatI	GCNGC	3 cut(s)	285, 306, 342
Sau3AI	GATC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	312
SfcI	CTRYAG	1 cut(s)	289
Sse9I	AATT	1 cut(s)	258
SsiI	CCGC	2 cut(s)	306, 342
SspMI	CTAG	2 cut(s)	326, 415
StyD4I	CCNGG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	1 cut(s)	301
TasI	AATT	1 cut(s)	258
TauI	GCSGC	2 cut(s)	308, 344
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	1 cut(s)	58
TspGWI	ACGGA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	232
XagI	CCTNNNNNAGG	1 cut(s)	292
XspI	CTAG	2 cut(s)	326, 415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.