FvH4_7g19270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006907
Physical Location & Seq
Reverse (-)
15921417 .. 15922290
874 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19270.t1

Sequence Viewer

Length: 450 bp
ATGGAAGGAATTGATGGAATGGTGGGAAGTGAAGGGATCGTAGTGGGAAAGGTGGGGAATGTAGTGGCTGGAAGTGGAGGAAGAGTGAACTTGGGAGCAGTGGGAAGGTTTGGCAATGTTGGATTTGGGAGAGAAGGCATTTGGGTGCCTGGCACAGATGGGATTTGTGTTGTGGGTTTTGGCAGAGTTGGCAATGGAGGCAGTGTAGTAGGCACAGGCAGTGTTGGCAATGAAGGCAGTGGAGGGAATCCTTTTGGAATTGAAGTCTGCAATAGGTGCCTGGCGCCGAAGCTCATGTCAATGCTGGACAAACACAATGCTGCTACCATGATAGATAATAAGGAACAATGCTTGAGACCTGCCATTTTAGTTGAAAATCTAGAACTTGATATTTGTTTCTTGTTTGAGTTGTTCAAGATAGAGTACGTGAAGGGTATTTATAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.5

Weight (kDa)

5.22

Isoelectric Point (pI)

15.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 367
AccB1I GGYRCC 3 cut(s) 145, 276, 283
AclWI GGATC 1 cut(s) 44
AcyI GRCGYC 1 cut(s) 284
AfaI GTAC 1 cut(s) 425
AgsI TTSAA 3 cut(s) 263, 374, 415
AjnI CCWGG 2 cut(s) 148, 279
AluBI AGCT 1 cut(s) 292
AluI AGCT 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 320
ArsI GACNNNNNNTTYG 2 cut(s) 281, 313
AspLEI GCGC 1 cut(s) 286
BanI GGYRCC 3 cut(s) 145, 276, 283
BbvI GCAGC 1 cut(s) 307
BccI CCATC 2 cut(s) 8, 152
BciT130I CCWGG 2 cut(s) 150, 281
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 1 cut(s) 380
BfoI RGCGCY 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 367
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 2 cut(s) 150, 281
BmiI GGNNCC 3 cut(s) 147, 278, 285
BmrFI CCNGG 2 cut(s) 150, 281
BpuEI CTTGAG 1 cut(s) 373
BsaAI YACGTR 1 cut(s) 427
BsaHI GRCGYC 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 349
BsaXI ACNNNNNCTCC 4 cut(s) 69, 99, 189, 219
Bse3DI GCAATG 3 cut(s) 121, 199, 235
BseBI CCWGG 2 cut(s) 150, 281
BseMI GCAATG 3 cut(s) 121, 199, 235
BseXI GCAGC 1 cut(s) 307
BshNI GGYRCC 3 cut(s) 145, 276, 283
BsmAI GTCTC 1 cut(s) 349
Bso31I GGTCTC 1 cut(s) 349
Bsp143I GATC 1 cut(s) 36
BspLI GGNNCC 3 cut(s) 147, 278, 285
BspMI ACCTGC 1 cut(s) 367
BspPI GGATC 1 cut(s) 44
BspT107I GGYRCC 3 cut(s) 145, 276, 283
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 3 cut(s) 121, 199, 235
BssMI GATC 1 cut(s) 36
BssNI GRCGYC 1 cut(s) 284
Bst2UI CCWGG 2 cut(s) 150, 281
Bst6I CTCTTC 1 cut(s) 76
BstACI GRCGYC 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 427
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 349
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 5 cut(s) 189, 198, 225, 234, 276
BstNI CCWGG 2 cut(s) 150, 281
BstSCI CCNGG 2 cut(s) 148, 279
BstV1I GCAGC 1 cut(s) 307
BtsI GCAGTG 4 cut(s) 105, 208, 226, 244
BtsIMutI CAGTG 4 cut(s) 105, 208, 226, 244
BveI ACCTGC 1 cut(s) 367
CfoI GCGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 424
CviAII CATG 2 cut(s) 295, 328
CviJI RGCY 2 cut(s) 68, 292
CviKI_1 RGCY 2 cut(s) 68, 292
CviQI GTAC 1 cut(s) 424
DinI GGCGCC 1 cut(s) 285
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco31I GGTCTC 1 cut(s) 349
EcoRII CCWGG 2 cut(s) 148, 279
EgeI GGCGCC 1 cut(s) 285
EheI GGCGCC 1 cut(s) 285
FaeI CATG 2 cut(s) 298, 331
FaiI YATR 3 cut(s) 296, 329, 441
FatI CATG 2 cut(s) 294, 327
Fnu4HI GCNGC 1 cut(s) 321
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 1 cut(s) 380
GlaI GCGC 1 cut(s) 285
GluI GCNGC 1 cut(s) 321
HaeII RGCGCY 1 cut(s) 287
HhaI GCGC 1 cut(s) 286
Hin1I GRCGYC 1 cut(s) 284
Hin1II CATG 2 cut(s) 298, 331
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HinfI GANTC 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 88
Hpy188III TCNNGA 2 cut(s) 380, 415
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 5 cut(s) 26, 99, 128, 227, 424
HpyCH4IV ACGT 1 cut(s) 426
HpyCH4V TGCA 1 cut(s) 270
HpyF10VI GCNNNNNNNGC 5 cut(s) 189, 198, 225, 234, 276
HpySE526I ACGT 1 cut(s) 426
Hsp92I GRCGYC 1 cut(s) 284
Hsp92II CATG 2 cut(s) 298, 331
HspAI GCGC 1 cut(s) 284
KasI GGCGCC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 8 cut(s) 54, 135, 162, 201, 266, 290, 293, 372
Lsp1109I GCAGC 1 cut(s) 307
MaeI CTAG 1 cut(s) 380
MaeII ACGT 1 cut(s) 426
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 1 cut(s) 93
MluCI AATT 2 cut(s) 9, 258
Mly113I GGCGCC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 3 cut(s) 71, 191, 236
MslI CAYNNNNRTG 2 cut(s) 143, 299
MspR9I CCNGG 2 cut(s) 150, 281
MvaI CCWGG 2 cut(s) 150, 281
MwoI GCNNNNNNNGC 5 cut(s) 189, 198, 225, 234, 276
NarI GGCGCC 1 cut(s) 284
NdeII GATC 1 cut(s) 36
NlaIII CATG 2 cut(s) 298, 331
NlaIV GGNNCC 3 cut(s) 147, 278, 285
PfeI GAWTC 1 cut(s) 247
PkrI GCNGC 1 cut(s) 322
PluTI GGCGCC 1 cut(s) 287
Ppu21I YACGTR 1 cut(s) 427
Psp6I CCWGG 2 cut(s) 148, 279
PspGI CCWGG 2 cut(s) 148, 279
PspN4I GGNNCC 3 cut(s) 147, 278, 285
RsaI GTAC 1 cut(s) 425
RsaNI GTAC 1 cut(s) 424
RseI CAYNNNNRTG 2 cut(s) 143, 299
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 150, 281
SetI ASST 6 cut(s) 54, 110, 278, 294, 361, 429
SfoI GGCGCC 1 cut(s) 285
SmiMI CAYNNNNRTG 2 cut(s) 143, 299
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 2 cut(s) 9, 258
SspDI GGCGCC 1 cut(s) 283
SspMI CTAG 1 cut(s) 380
StyD4I CCNGG 2 cut(s) 148, 279
TaiI ACGT 1 cut(s) 429
TasI AATT 2 cut(s) 9, 258
TfiI GAWTC 1 cut(s) 247
TscAI CASTG 4 cut(s) 105, 208, 226, 244
TseI GCWGC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 4 cut(s) 105, 208, 226, 244
XbaI TCTAGA 1 cut(s) 379
XspI CTAG 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.