Rh1CG293500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006907
Physical Location & Seq
Reverse (-)
56612624 .. 56619755
7132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG293500.1

Sequence Viewer

Length: 372 bp
ATGTTGGGAAGTGAAGGGATTGTAGTGGGGAAGTTGGGGAATGTAGTGGCCGGAAGTGGAGGTAGAGTGAACTTAGGAGCTGTGGGAAGGTTTGGCATTGTTGGATTTGGTAGAGATGGGATTTGGGTGCTTGGCAGAGACGGGATTTGTGTTGTGGGTTTTGGCAATGTTGGCAATCGTGGCAGTGAAGTTGGCATAGGCAGTGTGGAAGGCAGTGGAGGCAATGCACCCTTGGGAATCGGAATCGATGGAATTGATGTCTGCAACAGGTGCCTGGCGCCAAAGCTCATGTCAATGCTTGACAAACACAATGCTGCTACCATGATAGATAATAGGGAACAATGCATGAGGCCTGCCATTTTAGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

12.45

Weight (kDa)

6.56

Isoelectric Point (pI)

13.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 270, 277
AcoI YGGCCR 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 278
AgsI TTSAA 1 cut(s) 368
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 2 cut(s) 80, 286
AluI AGCT 2 cut(s) 80, 286
Alw26I GTCTC 1 cut(s) 132
AoxI GGCC 2 cut(s) 48, 350
ApeKI GCWGC 1 cut(s) 314
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AspLEI GCGC 1 cut(s) 280
BanI GGYRCC 2 cut(s) 270, 277
BbvI GCAGC 1 cut(s) 301
BccI CCATC 2 cut(s) 110, 242
BciT130I CCWGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 1 cut(s) 275
BmiI GGNNCC 2 cut(s) 272, 279
BmrFI CCNGG 1 cut(s) 275
Bsa29I ATCGAT 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 278
BsaJI CCNNGG 1 cut(s) 231
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse3DI GCAATG 2 cut(s) 172, 229
BseBI CCWGG 1 cut(s) 275
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 1 cut(s) 231
BseMI GCAATG 2 cut(s) 172, 229
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 2 cut(s) 50, 352
BshNI GGYRCC 2 cut(s) 270, 277
BshVI ATCGAT 1 cut(s) 246
BsiSI CCGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 132
BsmBI CGTCTC 1 cut(s) 132
BsnI GGCC 2 cut(s) 50, 352
BspANI GGCC 2 cut(s) 50, 352
BspDI ATCGAT 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 272, 279
BspT107I GGYRCC 2 cut(s) 270, 277
BsrDI GCAATG 2 cut(s) 172, 229
BssECI CCNNGG 1 cut(s) 231
BssNI GRCGYC 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 231
Bst2UI CCWGG 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 132
BstMWI GCNNNNNNNGC 4 cut(s) 171, 180, 219, 270
BstNI CCWGG 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 273
BstV1I GCAGC 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 2 cut(s) 50, 352
BsuTUI ATCGAT 1 cut(s) 246
BtsI GCAGTG 3 cut(s) 190, 208, 220
BtsIMutI CAGTG 3 cut(s) 190, 208, 220
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 1 cut(s) 280
ClaI ATCGAT 1 cut(s) 246
CviAII CATG 3 cut(s) 289, 322, 346
CviJI RGCY 4 cut(s) 50, 80, 286, 352
CviKI_1 RGCY 4 cut(s) 50, 80, 286, 352
DdeI CTNAG 1 cut(s) 73
DinI GGCGCC 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 231
Eco147I AGGCCT 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 273
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 347
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 132
FaeI CATG 3 cut(s) 292, 325, 349
FaiI YATR 4 cut(s) 197, 290, 323, 347
FatI CATG 3 cut(s) 288, 321, 345
Fnu4HI GCNGC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 315
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 2 cut(s) 50, 352
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 3 cut(s) 292, 325, 349
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 2 cut(s) 237, 243
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 1 cut(s) 242
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 8, 81, 203
HpyCH4V TGCA 3 cut(s) 227, 264, 345
HpyF10VI GCNNNNNNNGC 4 cut(s) 171, 180, 219, 270
HpyF3I CTNAG 1 cut(s) 73
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 3 cut(s) 292, 325, 349
HspAI GCGC 1 cut(s) 278
KasI GGCGCC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 5 cut(s) 64, 253, 260, 287, 366
Lsp1109I GCAGC 1 cut(s) 301
MluCI AATT 1 cut(s) 252
Mly113I GGCGCC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 3 cut(s) 53, 212, 342
Mph1103I ATGCAT 1 cut(s) 347
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 275
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 4 cut(s) 171, 180, 219, 270
NarI GGCGCC 1 cut(s) 278
NlaIII CATG 3 cut(s) 292, 325, 349
NlaIV GGNNCC 2 cut(s) 272, 279
NsiI ATGCAT 1 cut(s) 347
PceI AGGCCT 1 cut(s) 352
PfeI GAWTC 2 cut(s) 237, 243
PkrI GCNGC 1 cut(s) 316
PluTI GGCGCC 1 cut(s) 281
Psp6I CCWGG 1 cut(s) 273
PspGI CCWGG 1 cut(s) 273
PspN4I GGNNCC 2 cut(s) 272, 279
RseI CAYNNNNRTG 1 cut(s) 293
SatI GCNGC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 275
SetI ASST 5 cut(s) 64, 82, 92, 272, 288
SfoI GGCGCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 1 cut(s) 252
SseBI AGGCCT 1 cut(s) 352
SspDI GGCGCC 1 cut(s) 277
StuI AGGCCT 1 cut(s) 352
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 1 cut(s) 231
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 252
TfiI GAWTC 2 cut(s) 237, 243
TscAI CASTG 3 cut(s) 190, 208, 220
TseI GCWGC 1 cut(s) 314
TspRI CASTG 3 cut(s) 190, 208, 220
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.