RchiOBHm_Chr1g0363111

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006907
Physical Location & Seq
Reverse (-)
54600506 .. 54600888
383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58788

Sequence Viewer

Length: 351 bp
ATGTTGGGAAGTGAAGGGATTGTAGTGGGGAAGTTGGGGAATGTAGTGGCCGGAAGTGGAGGTAGAGTGAACTTGGGAGCGGTGGGAGGGTTTGGCCTAGGTATAGATGGGATTTGGGTGCTTGGCAGAGGTGGGATTTGTGTTGTGGGTTTTGGCTGTGGTGGCAATGGTGGCAGAGGAGTTGGCATAGGCAGTGGAGGCACTGCACCCTTGGGAACTGGAATCAATGGAATTGATGCCTGCAACAGGTGCCTGGCGCCAAAGCTGATGTCAATGCTCGACAAACACAATGCCGCTACCATGATAGATAATAGGGAACAATGCTTGAGGCCTGCCATTTTAGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

11.35

Weight (kDa)

8.38

Isoelectric Point (pI)

20.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 249, 256
AccBSI CCGCTC 1 cut(s) 80
AciI CCGC 2 cut(s) 80, 294
AcoI YGGCCR 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 257
AfiI CCNNNNNNNGG 1 cut(s) 246
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
AoxI GGCC 3 cut(s) 48, 94, 329
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspA2I CCTAGG 1 cut(s) 97
AspLEI GCGC 1 cut(s) 259
AvrII CCTAGG 1 cut(s) 97
BanI GGYRCC 2 cut(s) 249, 256
BccI CCATC 1 cut(s) 101
BciT130I CCWGG 1 cut(s) 254
BfaI CTAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 260
BisI GCNGC 1 cut(s) 294
BlnI CCTAGG 1 cut(s) 97
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 251, 258
BmrFI CCNGG 1 cut(s) 254
BmsI GCATC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 97, 210
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 246
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 1 cut(s) 172
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 2 cut(s) 97, 210
BseLI CCNNNNNNNGG 1 cut(s) 246
BseMI GCAATG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 192
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 3 cut(s) 50, 96, 331
BshNI GGYRCC 2 cut(s) 249, 256
BsiSI CCGG 1 cut(s) 51
BslI CCNNNNNNNGG 1 cut(s) 246
BsnI GGCC 3 cut(s) 50, 96, 331
BspACI CCGC 2 cut(s) 80, 294
BspANI GGCC 3 cut(s) 50, 96, 331
BspLI GGNNCC 2 cut(s) 251, 258
BspT107I GGYRCC 2 cut(s) 249, 256
BsrBI CCGCTC 1 cut(s) 80
BsrDI GCAATG 1 cut(s) 172
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 2 cut(s) 97, 210
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 97, 210
Bst2UI CCWGG 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 2 cut(s) 241, 333
BstENI CCTNNNNNAGG 1 cut(s) 244
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstMWI GCNNNNNNNGC 4 cut(s) 162, 171, 198, 249
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 252
BsuRI GGCC 3 cut(s) 50, 96, 331
BtsI GCAGTG 2 cut(s) 199, 201
BtsIMutI CAGTG 2 cut(s) 199, 201
Cac8I GCNNGC 2 cut(s) 241, 333
CfoI GCGC 1 cut(s) 259
CviAII CATG 1 cut(s) 301
CviJI RGCY 5 cut(s) 50, 96, 156, 265, 331
CviKI_1 RGCY 5 cut(s) 50, 96, 156, 265, 331
DinI GGCGCC 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 48
Eco130I CCWWGG 2 cut(s) 97, 210
Eco147I AGGCCT 1 cut(s) 331
EcoNI CCTNNNNNAGG 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 2 cut(s) 97, 210
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
ErhI CCWWGG 2 cut(s) 97, 210
FaeI CATG 1 cut(s) 304
FaiI YATR 3 cut(s) 104, 188, 302
FatI CATG 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
FspBI CTAG 1 cut(s) 98
GlaI GCGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 3 cut(s) 50, 96, 331
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 206, 243
HpyF10VI GCNNNNNNNGC 4 cut(s) 162, 171, 198, 249
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 1 cut(s) 257
KasI GGCGCC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 7 cut(s) 64, 204, 232, 239, 253, 266, 345
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 98
MbiI CCGCTC 1 cut(s) 80
MluCI AATT 1 cut(s) 231
Mly113I GGCGCC 1 cut(s) 257
MnlI CCTC 6 cut(s) 53, 80, 122, 170, 191, 321
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 4 cut(s) 162, 171, 198, 249
NarI GGCGCC 1 cut(s) 257
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 2 cut(s) 251, 258
PceI AGGCCT 1 cut(s) 331
PfeI GAWTC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 295
PluTI GGCGCC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 251, 258
SatI GCNGC 1 cut(s) 294
ScrFI CCNGG 1 cut(s) 254
SetI ASST 5 cut(s) 64, 103, 133, 251, 267
SfaNI GCATC 1 cut(s) 226
SfoI GGCGCC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 1 cut(s) 231
SseBI AGGCCT 1 cut(s) 331
SsiI CCGC 2 cut(s) 80, 294
SspDI GGCGCC 1 cut(s) 256
SspMI CTAG 1 cut(s) 98
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 2 cut(s) 97, 210
TaqI TCGA 1 cut(s) 279
TasI AATT 1 cut(s) 231
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 1 cut(s) 222
TscAI CASTG 2 cut(s) 199, 208
TspRI CASTG 2 cut(s) 199, 208
XagI CCTNNNNNAGG 1 cut(s) 244
XmaJI CCTAGG 1 cut(s) 97
XspI CTAG 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.