Rroxscaffold_4G00293710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006907
Physical Location & Seq
Reverse (-)
13914716 .. 13916014
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00293710.1

Sequence Viewer

Length: 525 bp
ATGTTGGGAAGTGAAGGGATTGTAGTGGGGAAGGTCGGGAATGTAGTGGCCGGAAGTGGAGGTAGAGTGAACTTGGGAGCAGTGGGAAGGTTTGGCAATGTTGGATTAGGTAGAGATGGGATTTGGGTGCTTGGCGGAGATGGGATTTGTGTTGGGGGTTTTGGCAGTGTTGGCAATGGTGGCAGTGAATTTGGCATGGGCAGTGTGGAAGGCAGTGGAGGCAATGCACCCTTGGGAATCGGAATCGATGGAATTGATGTCTGCAACAGGTGCCAGGCGCCAAAGCTCATGTCAATGCTTGACAAACACAATGCTGCTACCATGATAGATAATAGGGAACAATGCTTGAGGCCTGCCATATTGGTTGAAAAGTATGGAACTTTGATTCGTCTCGCACAGTTAGTACAAGCTTGTATTCCAGGCTTTCCGGGAAGATTTTTGTGCGTGGCAAAACAGCACGGGTTGTTCCCAGGTTCACACCCTAGACTAAGTGCCTTGGGGAAGAACATGAATGCACTGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

17.7

Weight (kDa)

8.61

Isoelectric Point (pI)

17.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 270, 277
AciI CCGC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 48
AcsI RAATTY 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 1 cut(s) 405
AgsI TTSAA 1 cut(s) 368
AjnI CCWGG 3 cut(s) 273, 418, 469
AluBI AGCT 2 cut(s) 286, 410
AluI AGCT 2 cut(s) 286, 410
Alw26I GTCTC 1 cut(s) 395
AoxI GGCC 2 cut(s) 48, 350
ApeKI GCWGC 1 cut(s) 314
ApoI RAATTY 1 cut(s) 188
ArsI GACNNNNNNTTYG 2 cut(s) 275, 307
AspLEI GCGC 1 cut(s) 280
AsuC2I CCSGG 1 cut(s) 429
BanI GGYRCC 2 cut(s) 270, 277
BbvI GCAGC 1 cut(s) 301
BccI CCATC 3 cut(s) 110, 134, 242
BciT130I CCWGG 3 cut(s) 275, 420, 471
BcnI CCSGG 1 cut(s) 429
BcoDI GTCTC 1 cut(s) 395
BfaI CTAG 1 cut(s) 483
BfoI RGCGCY 1 cut(s) 281
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme1390I CCNGG 4 cut(s) 275, 420, 429, 471
BmiI GGNNCC 2 cut(s) 272, 279
BmrFI CCNGG 4 cut(s) 275, 420, 429, 471
BpuEI CTTGAG 1 cut(s) 367
BpuMI CCSGG 1 cut(s) 429
Bsa29I ATCGAT 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 231, 469, 495
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse1I ACTGG 1 cut(s) 522
Bse3DI GCAATG 3 cut(s) 103, 181, 229
BseBI CCWGG 3 cut(s) 275, 420, 471
BseCI ATCGAT 1 cut(s) 246
BseDI CCNNGG 3 cut(s) 231, 469, 495
BseMI GCAATG 3 cut(s) 103, 181, 229
BseNI ACTGG 1 cut(s) 522
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 2 cut(s) 50, 352
BshNI GGYRCC 2 cut(s) 270, 277
BshVI ATCGAT 1 cut(s) 246
BsiSI CCGG 2 cut(s) 51, 428
BsmAI GTCTC 1 cut(s) 395
BsmBI CGTCTC 1 cut(s) 395
BsmI GAATGC 1 cut(s) 517
BsnI GGCC 2 cut(s) 50, 352
BspACI CCGC 1 cut(s) 135
BspANI GGCC 2 cut(s) 50, 352
BspDI ATCGAT 1 cut(s) 246
BspLI GGNNCC 2 cut(s) 272, 279
BspT107I GGYRCC 2 cut(s) 270, 277
BsrDI GCAATG 3 cut(s) 103, 181, 229
BsrI ACTGG 1 cut(s) 522
BssECI CCNNGG 3 cut(s) 231, 469, 495
BssNI GRCGYC 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 231, 495
Bst2UI CCWGG 3 cut(s) 275, 420, 471
Bst4CI ACNGT 1 cut(s) 399
BstACI GRCGYC 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 1 cut(s) 488
BstH2I RGCGCY 1 cut(s) 281
BstHHI GCGC 1 cut(s) 280
BstMAI GTCTC 1 cut(s) 395
BstMWI GCNNNNNNNGC 4 cut(s) 171, 180, 219, 270
BstNI CCWGG 3 cut(s) 275, 420, 471
BstSCI CCNGG 4 cut(s) 273, 418, 427, 469
BstV1I GCAGC 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 246
BsuRI GGCC 2 cut(s) 50, 352
BsuTUI ATCGAT 1 cut(s) 246
BtsI GCAGTG 5 cut(s) 87, 172, 190, 208, 220
BtsIMutI CAGTG 6 cut(s) 87, 172, 190, 208, 220, 515
Cac8I GCNNGC 1 cut(s) 354
CfoI GCGC 1 cut(s) 280
ClaI ATCGAT 1 cut(s) 246
Csp6I GTAC 1 cut(s) 404
CviAII CATG 4 cut(s) 196, 289, 322, 508
CviJI RGCY 5 cut(s) 50, 286, 352, 410, 423
CviKI_1 RGCY 5 cut(s) 50, 286, 352, 410, 423
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 1 cut(s) 488
DinI GGCGCC 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 48
EciI GGCGGA 1 cut(s) 150
Eco130I CCWWGG 2 cut(s) 231, 495
Eco147I AGGCCT 1 cut(s) 352
EcoRII CCWGG 3 cut(s) 273, 418, 469
EcoT14I CCWWGG 2 cut(s) 231, 495
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
ErhI CCWWGG 2 cut(s) 231, 495
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 4 cut(s) 199, 292, 325, 511
FaiI YATR 6 cut(s) 197, 290, 323, 359, 375, 509
FatI CATG 4 cut(s) 195, 288, 321, 507
Fnu4HI GCNGC 1 cut(s) 315
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 1 cut(s) 483
GlaI GCGC 1 cut(s) 279
GluI GCNGC 1 cut(s) 315
HaeII RGCGCY 1 cut(s) 281
HaeIII GGCC 2 cut(s) 50, 352
HapII CCGG 2 cut(s) 51, 428
HhaI GCGC 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 4 cut(s) 199, 292, 325, 511
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 3 cut(s) 237, 243, 385
HpaII CCGG 2 cut(s) 51, 428
Hpy166II GTNNAC 2 cut(s) 70, 476
Hpy188I TCNGA 1 cut(s) 242
Hpy188III TCNNGA 1 cut(s) 37
Hpy8I GTNNAC 2 cut(s) 70, 476
HpyAV CCTTC 4 cut(s) 8, 25, 81, 203
HpyCH4III ACNGT 1 cut(s) 399
HpyCH4V TGCA 3 cut(s) 227, 264, 515
HpyF10VI GCNNNNNNNGC 4 cut(s) 171, 180, 219, 270
HpyF3I CTNAG 1 cut(s) 488
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 4 cut(s) 199, 292, 325, 511
HspAI GCGC 1 cut(s) 278
KasI GGCGCC 1 cut(s) 277
LmnI GCTCC 1 cut(s) 77
Lsp1109I GCAGC 1 cut(s) 301
MaeI CTAG 1 cut(s) 483
MboII GAAGA 2 cut(s) 444, 514
MluCI AATT 2 cut(s) 188, 252
Mly113I GGCGCC 1 cut(s) 278
MmeI TCCRAC 1 cut(s) 82
MnlI CCTC 3 cut(s) 53, 212, 342
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 2 cut(s) 51, 428
MspR9I CCNGG 4 cut(s) 275, 420, 429, 471
Mva1269I GAATGC 1 cut(s) 517
MvaI CCWGG 3 cut(s) 275, 420, 471
MwoI GCNNNNNNNGC 4 cut(s) 171, 180, 219, 270
NarI GGCGCC 1 cut(s) 278
NciI CCSGG 1 cut(s) 429
NlaIII CATG 4 cut(s) 199, 292, 325, 511
NlaIV GGNNCC 2 cut(s) 272, 279
PceI AGGCCT 1 cut(s) 352
PctI GAATGC 1 cut(s) 517
PfeI GAWTC 3 cut(s) 237, 243, 385
PfoI TCCNGGA 1 cut(s) 427
PkrI GCNGC 1 cut(s) 316
PluTI GGCGCC 1 cut(s) 281
Psp6I CCWGG 3 cut(s) 273, 418, 469
PspGI CCWGG 3 cut(s) 273, 418, 469
PspN4I GGNNCC 2 cut(s) 272, 279
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
RseI CAYNNNNRTG 1 cut(s) 293
SatI GCNGC 1 cut(s) 315
ScrFI CCNGG 4 cut(s) 275, 420, 429, 471
SetI ASST 8 cut(s) 36, 64, 92, 112, 272, 288, 412, 475
SfoI GGCGCC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 293
SmlI CTYRAG 1 cut(s) 346
SmoI CTYRAG 1 cut(s) 346
Sse9I AATT 2 cut(s) 188, 252
SseBI AGGCCT 1 cut(s) 352
SsiI CCGC 1 cut(s) 135
SspDI GGCGCC 1 cut(s) 277
SspMI CTAG 1 cut(s) 483
StuI AGGCCT 1 cut(s) 352
StyD4I CCNGG 4 cut(s) 273, 418, 427, 469
StyI CCWWGG 2 cut(s) 231, 495
TaaI ACNGT 1 cut(s) 399
TaqI TCGA 1 cut(s) 246
TasI AATT 2 cut(s) 188, 252
TatI WGTACW 1 cut(s) 403
TfiI GAWTC 3 cut(s) 237, 243, 385
TscAI CASTG 6 cut(s) 87, 172, 190, 208, 220, 522
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 1 cut(s) 524
TspRI CASTG 6 cut(s) 87, 172, 190, 208, 220, 522
XapI RAATTY 1 cut(s) 188
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.