Rorug02G0173100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006907
Physical Location & Seq
Forward (+)
15732415 .. 15732654
240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0173100.1

Sequence Viewer

Length: 240 bp
ATGCTAACCTTCACCGGTGAGCAACCTGATATATGTGGAGACTGCTATGGGATTTCAAGGATTCGTGTTGTGTATAGACCTGTGGCGGCGCCTGTTAATGTCTCATCTTTGTTGACTGCTAGCAGCCTGGTACCAAGGCACATTGGTTTACCTGCTGCAAGTGCAAGAAGATACAACGATGGTCAATCAATTGCTTTGAAGTACTCGGGATCTTGGGGATACAACGATGTAACAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.53

Weight (kDa)

7.8

Isoelectric Point (pI)

49.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 160
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 2 cut(s) 88, 130
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 2 cut(s) 132, 203
AgeI ACCGGT 1 cut(s) 14
AgsI TTSAA 2 cut(s) 57, 199
AjnI CCWGG 1 cut(s) 126
Alw26I GTCTC 2 cut(s) 33, 106
AlwI GGATC 1 cut(s) 217
Ama87I CYCGRG 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 123, 155
AsiGI ACCGGT 1 cut(s) 14
Asp718I GGTACC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 4, 29
AsuNHI GCTAGC 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 205
BanI GGYRCC 2 cut(s) 88, 130
BbvI GCAGC 2 cut(s) 135, 142
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 128
BciVI GTATCC 1 cut(s) 212
BcoDI GTCTC 2 cut(s) 33, 106
BfaI CTAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 92
BfuAI ACCTGC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 212
BisI GCNGC 3 cut(s) 87, 124, 156
BlsI GCNGC 3 cut(s) 88, 125, 157
BmcAI AGTACT 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 90, 132
BmrFI CCNGG 1 cut(s) 128
BmtI GCTAGC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 14
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 135, 142
BshNI GGYRCC 2 cut(s) 88, 130
BshTI ACCGGT 1 cut(s) 14
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 15
BsmAI GTCTC 2 cut(s) 33, 106
BsoBI CYCGRG 1 cut(s) 205
Bsp143I GATC 1 cut(s) 209
BspACI CCGC 1 cut(s) 86
BspLI GGNNCC 2 cut(s) 90, 132
BspMI ACCTGC 1 cut(s) 160
BspOI GCTAGC 1 cut(s) 123
BspPI GGATC 1 cut(s) 217
BspT107I GGYRCC 2 cut(s) 88, 130
BsrFI RCCGGY 1 cut(s) 14
BssAI RCCGGY 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 1 cut(s) 209
BssNI GRCGYC 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 121
BstH2I RGCGCY 1 cut(s) 92
BstHHI GCGC 1 cut(s) 91
BstKTI GATC 1 cut(s) 212
BstMAI GTCTC 2 cut(s) 33, 106
BstMBI GATC 1 cut(s) 209
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 135, 142
BstX2I RGATCY 1 cut(s) 209
BstYI RGATCY 1 cut(s) 209
BsuI GTATCC 1 cut(s) 212
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 91
Cfr10I RCCGGY 1 cut(s) 14
Csp6I GTAC 2 cut(s) 131, 202
CspAI ACCGGT 1 cut(s) 14
CviJI RGCY 1 cut(s) 126
CviKI_1 RGCY 1 cut(s) 126
CviQI GTAC 2 cut(s) 131, 202
DinI GGCGCC 1 cut(s) 90
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 134
Eco88I CYCGRG 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 134
EgeI GGCGCC 1 cut(s) 90
EheI GGCGCC 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 134
FaiI YATR 4 cut(s) 32, 34, 48, 75
Fnu4HI GCNGC 3 cut(s) 87, 124, 156
Fsp4HI GCNGC 3 cut(s) 87, 124, 156
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 90
GluI GCNGC 3 cut(s) 87, 124, 156
HaeII RGCGCY 1 cut(s) 92
HapII CCGG 1 cut(s) 15
HhaI GCGC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 89
Hin6I GCGC 1 cut(s) 89
HinP1I GCGC 1 cut(s) 89
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 15
HphI GGTGA 2 cut(s) 4, 29
Hpy166II GTNNAC 2 cut(s) 114, 149
Hpy188III TCNNGA 1 cut(s) 207
Hpy8I GTNNAC 2 cut(s) 114, 149
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 158, 164
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 89
HspAI GCGC 1 cut(s) 89
KasI GGCGCC 1 cut(s) 88
KpnI GGTACC 1 cut(s) 134
Kzo9I GATC 1 cut(s) 209
LpnPI CCDG 7 cut(s) 28, 39, 93, 105, 113, 140, 165
Lsp1109I GCAGC 2 cut(s) 135, 142
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 229
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 180
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 1 cut(s) 209
MluCI AATT 1 cut(s) 189
Mly113I GGCGCC 1 cut(s) 89
MseI TTAA 1 cut(s) 96
MspI CCGG 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 128
MunI CAATTG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 161
NarI GGCGCC 1 cut(s) 89
NdeII GATC 1 cut(s) 209
NheI GCTAGC 1 cut(s) 119
NlaIV GGNNCC 2 cut(s) 90, 132
PfeI GAWTC 1 cut(s) 61
PinAI ACCGGT 1 cut(s) 14
PkrI GCNGC 3 cut(s) 88, 125, 157
PluTI GGCGCC 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 126
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 90, 132
PsuI RGATCY 1 cut(s) 209
RsaI GTAC 2 cut(s) 132, 203
RsaNI GTAC 2 cut(s) 131, 202
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 3 cut(s) 87, 124, 156
Sau3AI GATC 1 cut(s) 209
ScaI AGTACT 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 128
SetI ASST 4 cut(s) 11, 28, 82, 154
SfoI GGCGCC 1 cut(s) 90
SgrAI CRCCGGYG 1 cut(s) 14
Sse9I AATT 1 cut(s) 189
SsiI CCGC 1 cut(s) 86
SspDI GGCGCC 1 cut(s) 88
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 134
TasI AATT 1 cut(s) 189
TatI WGTACW 1 cut(s) 201
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TseI GCWGC 2 cut(s) 123, 155
XspI CTAG 1 cut(s) 120
ZrmI AGTACT 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.