Rh2CG229300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0006907
Physical Location & Seq
Reverse (-)
23242827 .. 23243216
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG229300.1

Sequence Viewer

Length: 390 bp
ATGGTGGGCACTGGAGTGACTGGAAGCGGAGGAGGAGTGACCTTAGGAGCAGCCGGCATGGTTGGGAGGGTCGGCTTTGGCAAAGAGGGGATTTGGATGCTTGGTAGTGGTGGCATTGTGGTTTTGGGCAGAGATGGGATGGGGTTGATCGTAAATGGTGGTAATGTAGGTTTTGGCAGGGAAGGTAGGGAAGGCACTGCAACCTTGGGAAGAGATGGAATTGTAGGCACTGGTAATGCCGTAGCCTGCAGAAGGTTTCGGGCTGCGAAGCTCGTATCAATGCTAGATAAACACAATGCTGCTACCATCAAAGATAACAGGAAACAGCGCTTGAAACTAGCCATCTTGGTTGATAGGGACGAGATAGAACTAATATATAGTTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.22

Weight (kDa)

9.91

Isoelectric Point (pI)

14.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 27
AfeI AGCGCT 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 1 cut(s) 334
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 1 cut(s) 271
AluI AGCT 1 cut(s) 271
Aor51HI AGCGCT 1 cut(s) 329
ApeKI GCWGC 3 cut(s) 50, 263, 299
AspLEI GCGC 1 cut(s) 330
AxyI CCTNAGG 1 cut(s) 43
BaeGI GKGCMC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 62, 250, 286
BccI CCATC 5 cut(s) 128, 133, 209, 314, 350
BceAI ACGGC 1 cut(s) 224
BfaI CTAG 2 cut(s) 284, 338
BfmI CTRYAG 1 cut(s) 247
BfoI RGCGCY 1 cut(s) 331
BisI GCNGC 3 cut(s) 51, 264, 300
BlsI GCNGC 3 cut(s) 52, 265, 301
BmsI GCATC 1 cut(s) 87
BpmI CTGGAG 1 cut(s) 33
BsaJI CCNNGG 1 cut(s) 204
BsaXI ACNNNNNCTCC 2 cut(s) 21, 51
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse118I RCCGGY 1 cut(s) 53
Bse1I ACTGG 3 cut(s) 16, 25, 235
Bse21I CCTNAGG 1 cut(s) 43
BseDI CCNNGG 1 cut(s) 204
BseGI GGATG 2 cut(s) 102, 144
BseLI CCNNNNNNNGG 1 cut(s) 252
BseNI ACTGG 3 cut(s) 16, 25, 235
BseRI GAGGAG 2 cut(s) 45, 48
BseSI GKGCMC 1 cut(s) 11
BseXI GCAGC 3 cut(s) 62, 250, 286
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 371
BslI CCNNNNNNNGG 1 cut(s) 252
BsmFI GGGAC 1 cut(s) 371
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 1 cut(s) 27
BspMAI CTGCAG 1 cut(s) 251
BsrFI RCCGGY 1 cut(s) 53
BsrI ACTGG 3 cut(s) 16, 25, 235
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 204
Bst6I CTCTTC 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 55, 247
BstDEI CTNAG 1 cut(s) 43
BstENI CCTNNNNNAGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 102, 144
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstSFI CTRYAG 1 cut(s) 247
BstSLI GKGCMC 1 cut(s) 11
BstV1I GCAGC 3 cut(s) 62, 250, 286
Bsu36I CCTNAGG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 102, 144
BtsI GCAGTG 1 cut(s) 195
BtsIMutI CAGTG 3 cut(s) 9, 195, 228
Cac8I GCNNGC 2 cut(s) 55, 247
CfoI GCGC 1 cut(s) 330
Cfr10I RCCGGY 1 cut(s) 53
CviAII CATG 1 cut(s) 58
CviJI RGCY 6 cut(s) 53, 75, 245, 263, 271, 341
CviKI_1 RGCY 6 cut(s) 53, 75, 245, 263, 271, 341
DdeI CTNAG 1 cut(s) 43
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 205
EarI CTCTTC 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 204
Eco47III AGCGCT 1 cut(s) 329
Eco81I CCTNAGG 1 cut(s) 43
EcoNI CCTNNNNNAGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 376, 378
FaqI GGGAC 1 cut(s) 371
FatI CATG 1 cut(s) 57
Fnu4HI GCNGC 3 cut(s) 51, 264, 300
FokI GGATG 2 cut(s) 109, 151
Fsp4HI GCNGC 3 cut(s) 51, 264, 300
FspBI CTAG 2 cut(s) 284, 338
GlaI GCGC 1 cut(s) 329
GluI GCNGC 3 cut(s) 51, 264, 300
GsuI CTGGAG 1 cut(s) 33
HaeII RGCGCY 1 cut(s) 331
HapII CCGG 1 cut(s) 54
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 61
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HpaII CCGG 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 387
HpyAV CCTTC 3 cut(s) 176, 185, 246
HpyCH4V TGCA 2 cut(s) 200, 249
HpyF3I CTNAG 1 cut(s) 43
Hsp92II CATG 1 cut(s) 61
HspAI GCGC 1 cut(s) 328
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 6 cut(s) 6, 67, 163, 216, 259, 304
Lsp1109I GCAGC 3 cut(s) 62, 250, 286
LweI GCATC 1 cut(s) 87
MaeI CTAG 2 cut(s) 284, 338
MaeIII GTNAC 2 cut(s) 16, 37
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 1 cut(s) 222
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 1 cut(s) 219
MnlI CCTC 4 cut(s) 23, 26, 60, 79
MroNI GCCGGC 1 cut(s) 53
MslI CAYNNNNRTG 1 cut(s) 14
MspI CCGG 1 cut(s) 54
NaeI GCCGGC 1 cut(s) 55
NdeII GATC 1 cut(s) 147
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 16, 37
OliI CACNNNNGTG 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 55
PkrI GCNGC 3 cut(s) 52, 265, 301
PstI CTGCAG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 14
SatI GCNGC 3 cut(s) 51, 264, 300
Sau3AI GATC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 11
SetI ASST 6 cut(s) 44, 172, 187, 206, 257, 273
SfaNI GCATC 1 cut(s) 87
SfcI CTRYAG 1 cut(s) 247
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 1 cut(s) 219
SsiI CCGC 1 cut(s) 27
SspMI CTAG 2 cut(s) 284, 338
StyI CCWWGG 1 cut(s) 204
TasI AATT 1 cut(s) 219
TscAI CASTG 3 cut(s) 16, 202, 235
TseFI GTSAC 2 cut(s) 16, 37
TseI GCWGC 3 cut(s) 50, 263, 299
Tsp45I GTSAC 2 cut(s) 16, 37
TspRI CASTG 3 cut(s) 16, 202, 235
XagI CCTNNNNNAGG 1 cut(s) 250
XspI CTAG 2 cut(s) 284, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.