Rh2AG226200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0006907
Physical Location & Seq
Reverse (-)
23923559 .. 23924097
539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG226200.1

Sequence Viewer

Length: 420 bp
ATGGTAGGGAACGAAGGTATCTTTGTCGGAATGGTGGGCACTGGAGTGACTGGAAGCGGAGGAAGAGTGACCTTAGGAGCAGCCGGCATGGTTGGGAGGGTCGGCTTTGGCAAAGAGGGGATTTGGATGCTTGGTAGTGGTGGCATTGTGGTTTTGGGCAGAGATGGGATGGGGTTGATCGTAAATGGTGGTAATGTAGGTTTTGGCAGGGAAGGTAGGGAAGGCATTGCAACCTTGGGAAGAGATGGAATTGTAGGCACTGGTAATGCCGTAGCCTGCGGAAGGTTTCGGGCTGCGAAGCTCGTATCAATGCTAGATAAACACAATGCTGCTACCATCAAAGATAACAGGAAACAGCGCTTGAAACTAGCCATCTTGGTTGATAGGGACGAGATAGAACTAATATATAGTTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

14.24

Weight (kDa)

9.69

Isoelectric Point (pI)

6.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 57, 279
AfeI AGCGCT 1 cut(s) 359
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 1 cut(s) 364
AleI CACNNNNGTG 1 cut(s) 44
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Aor51HI AGCGCT 1 cut(s) 359
ApeKI GCWGC 3 cut(s) 80, 293, 329
AspLEI GCGC 1 cut(s) 360
AxyI CCTNAGG 1 cut(s) 73
BaeGI GKGCMC 1 cut(s) 41
BaeI ACNNNNGTAYC 1 cut(s) 34
BbvI GCAGC 3 cut(s) 92, 280, 316
BccI CCATC 5 cut(s) 158, 163, 239, 344, 380
BceAI ACGGC 1 cut(s) 254
BfaI CTAG 2 cut(s) 314, 368
BfoI RGCGCY 1 cut(s) 361
BisI GCNGC 3 cut(s) 81, 294, 330
BlsI GCNGC 3 cut(s) 82, 295, 331
BmsI GCATC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 3 cut(s) 46, 55, 265
Bse21I CCTNAGG 1 cut(s) 73
Bse3DI GCAATG 1 cut(s) 225
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 2 cut(s) 132, 174
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMI GCAATG 1 cut(s) 225
BseNI ACTGG 3 cut(s) 46, 55, 265
BseSI GKGCMC 1 cut(s) 41
BseXI GCAGC 3 cut(s) 92, 280, 316
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 41
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 2 cut(s) 57, 279
BsrDI GCAATG 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 3 cut(s) 46, 55, 265
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 234
Bst6I CTCTTC 2 cut(s) 58, 235
BstC8I GCNNGC 2 cut(s) 85, 277
BstDEI CTNAG 1 cut(s) 73
BstENI CCTNNNNNAGG 1 cut(s) 280
BstF5I GGATG 2 cut(s) 132, 174
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 92, 280, 316
Bsu36I CCTNAGG 1 cut(s) 73
BtsCI GGATG 2 cut(s) 132, 174
BtsIMutI CAGTG 2 cut(s) 39, 258
Cac8I GCNNGC 2 cut(s) 85, 277
CfoI GCGC 1 cut(s) 360
Cfr10I RCCGGY 1 cut(s) 83
CviAII CATG 1 cut(s) 88
CviJI RGCY 6 cut(s) 83, 105, 275, 293, 301, 371
CviKI_1 RGCY 6 cut(s) 83, 105, 275, 293, 301, 371
DdeI CTNAG 1 cut(s) 73
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 58, 235
EarI CTCTTC 2 cut(s) 58, 235
Eco130I CCWWGG 1 cut(s) 234
Eco47III AGCGCT 1 cut(s) 359
Eco81I CCTNAGG 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 280
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 89, 406, 408
FaqI GGGAC 1 cut(s) 401
FatI CATG 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 81, 294, 330
FokI GGATG 2 cut(s) 139, 181
Fsp4HI GCNGC 3 cut(s) 81, 294, 330
FspBI CTAG 2 cut(s) 314, 368
GlaI GCGC 1 cut(s) 359
GluI GCNGC 3 cut(s) 81, 294, 330
GsuI CTGGAG 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 361
HapII CCGG 1 cut(s) 84
HhaI GCGC 1 cut(s) 360
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HpaII CCGG 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 1 cut(s) 417
HpyAV CCTTC 4 cut(s) 8, 206, 215, 276
HpyCH4V TGCA 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 358
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 7 cut(s) 27, 36, 97, 193, 246, 289, 334
Lsp1109I GCAGC 3 cut(s) 92, 280, 316
LweI GCATC 1 cut(s) 117
MaeI CTAG 2 cut(s) 314, 368
MaeIII GTNAC 2 cut(s) 46, 67
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 2 cut(s) 75, 252
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 3 cut(s) 53, 90, 109
MroNI GCCGGC 1 cut(s) 83
MslI CAYNNNNRTG 1 cut(s) 44
MspI CCGG 1 cut(s) 84
NaeI GCCGGC 1 cut(s) 85
NdeII GATC 1 cut(s) 177
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 91
NmuCI GTSAC 2 cut(s) 46, 67
OliI CACNNNNGTG 1 cut(s) 44
PdiI GCCGGC 1 cut(s) 85
PkrI GCNGC 3 cut(s) 82, 295, 331
RseI CAYNNNNRTG 1 cut(s) 44
SatI GCNGC 3 cut(s) 81, 294, 330
Sau3AI GATC 1 cut(s) 177
SduI GDGCHC 1 cut(s) 41
SetI ASST 7 cut(s) 19, 74, 202, 217, 236, 287, 303
SfaNI GCATC 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 44
Sse9I AATT 1 cut(s) 249
SsiI CCGC 2 cut(s) 57, 279
SspMI CTAG 2 cut(s) 314, 368
StyI CCWWGG 1 cut(s) 234
TasI AATT 1 cut(s) 249
TscAI CASTG 2 cut(s) 46, 265
TseFI GTSAC 2 cut(s) 46, 67
TseI GCWGC 3 cut(s) 80, 293, 329
Tsp45I GTSAC 2 cut(s) 46, 67
TspRI CASTG 2 cut(s) 46, 265
XagI CCTNNNNNAGG 1 cut(s) 280
XspI CTAG 2 cut(s) 314, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.