FvH4_3g12580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006907
Physical Location & Seq
Forward (+)
7477264 .. 7477838
575 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12580.t1

Sequence Viewer

Length: 396 bp
ATGGAAGGAATTGATGGCATCGTGGTCGGAATGGTTGGAAGTGAAGGGATTGTCGTGGGGAAGGAGGGGAGTGGAGGTAGAGTGAACTTGGGAGCAGTGGGAAGGTTTGGCAATGTTGGATTTGGGAGAGTTGGCATTTGGGTGCTTGGGACAGATGGGATTTGTGATGTGGGTTTTGGCAGAGTTGGCAATGGAGGCAGTGTAGTGGGCATAGGCAATGTTGAAGGCAATGAAGGCAGTGGAGGGAATCCCTTCGGAATCGGGATTGATGGAATTGAAGTCTGCAATAGGTGCCTGGCGCCGAAGCTCATGTCAATGCTTGACAAACACAATGCTGCTATCATGATAGATAATAGGGAACAATGCTTGAGACCTGCCATTTTAATTGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

13.28

Weight (kDa)

5.07

Isoelectric Point (pI)

18.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 382
AccB1I GGYRCC 2 cut(s) 291, 298
AcyI GRCGYC 1 cut(s) 299
AgsI TTSAA 3 cut(s) 224, 278, 389
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 1 cut(s) 307
AluI AGCT 1 cut(s) 307
Alw26I GTCTC 1 cut(s) 364
ApeKI GCWGC 1 cut(s) 335
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 301
BanI GGYRCC 2 cut(s) 291, 298
BbvI GCAGC 1 cut(s) 322
BccI CCATC 3 cut(s) 8, 149, 263
BcgI CGANNNNNNTGC 2 cut(s) 7, 41
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 364
BfoI RGCGCY 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 382
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 293, 300
BmrFI CCNGG 1 cut(s) 296
BmsI GCATC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 388
BsaHI GRCGYC 1 cut(s) 299
BsaI GGTCTC 1 cut(s) 364
BsaXI ACNNNNNCTCC 6 cut(s) 61, 66, 91, 96, 186, 216
Bse3DI GCAATG 4 cut(s) 118, 196, 223, 235
BseBI CCWGG 1 cut(s) 296
BseMI GCAATG 4 cut(s) 118, 196, 223, 235
BseXI GCAGC 1 cut(s) 322
BshNI GGYRCC 2 cut(s) 291, 298
BslFI GGGAC 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 364
BsmFI GGGAC 1 cut(s) 163
Bso31I GGTCTC 1 cut(s) 364
BspHI TCATGA 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 293, 300
BspMI ACCTGC 1 cut(s) 382
BspT107I GGYRCC 2 cut(s) 291, 298
BspTNI GGTCTC 1 cut(s) 364
BsrDI GCAATG 4 cut(s) 118, 196, 223, 235
BssNI GRCGYC 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 296
BstACI GRCGYC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 302
BstHHI GCGC 1 cut(s) 301
BstMAI GTCTC 1 cut(s) 364
BstMWI GCNNNNNNNGC 4 cut(s) 186, 195, 234, 291
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 322
BtsI GCAGTG 3 cut(s) 102, 205, 244
BtsIMutI CAGTG 3 cut(s) 102, 205, 244
BveI ACCTGC 1 cut(s) 382
CciI TCATGA 1 cut(s) 342
CfoI GCGC 1 cut(s) 301
CviAII CATG 2 cut(s) 310, 343
CviJI RGCY 1 cut(s) 307
CviKI_1 RGCY 1 cut(s) 307
DinI GGCGCC 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 364
EcoRII CCWGG 1 cut(s) 294
EgeI GGCGCC 1 cut(s) 300
EheI GGCGCC 1 cut(s) 300
FaeI CATG 2 cut(s) 313, 346
FaiI YATR 3 cut(s) 212, 311, 344
FaqI GGGAC 1 cut(s) 163
FatI CATG 2 cut(s) 309, 342
Fnu4HI GCNGC 1 cut(s) 336
Fsp4HI GCNGC 1 cut(s) 336
GlaI GCGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 336
HaeII RGCGCY 1 cut(s) 302
HhaI GCGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 2 cut(s) 313, 346
Hin6I GCGC 1 cut(s) 299
HinP1I GCGC 1 cut(s) 299
HinfI GANTC 2 cut(s) 247, 258
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 29, 257
Hpy188III TCNNGA 2 cut(s) 262, 343
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 6 cut(s) 38, 55, 96, 218, 227, 262
HpyCH4V TGCA 1 cut(s) 285
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 195, 234, 291
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 2 cut(s) 313, 346
HspAI GCGC 1 cut(s) 299
KasI GGCGCC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 3 cut(s) 281, 308, 387
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 27
MluCI AATT 3 cut(s) 9, 273, 384
Mly113I GGCGCC 1 cut(s) 299
MmeI TCCRAC 3 cut(s) 7, 16, 97
MnlI CCTC 4 cut(s) 58, 68, 188, 236
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 2 cut(s) 140, 314
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 4 cut(s) 186, 195, 234, 291
NarI GGCGCC 1 cut(s) 299
NlaIII CATG 2 cut(s) 313, 346
NlaIV GGNNCC 2 cut(s) 293, 300
PagI TCATGA 1 cut(s) 342
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 247, 258
PkrI GCNGC 1 cut(s) 337
PluTI GGCGCC 1 cut(s) 302
Psp6I CCWGG 1 cut(s) 294
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 293, 300
RseI CAYNNNNRTG 2 cut(s) 140, 314
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 1 cut(s) 336
ScrFI CCNGG 1 cut(s) 296
SetI ASST 5 cut(s) 79, 107, 293, 309, 376
SfaNI GCATC 1 cut(s) 27
SfoI GGCGCC 1 cut(s) 300
SmiMI CAYNNNNRTG 2 cut(s) 140, 314
SmlI CTYRAG 1 cut(s) 367
SmoI CTYRAG 1 cut(s) 367
Sse9I AATT 3 cut(s) 9, 273, 384
SspDI GGCGCC 1 cut(s) 298
StyD4I CCNGG 1 cut(s) 294
TasI AATT 3 cut(s) 9, 273, 384
TfiI GAWTC 2 cut(s) 247, 258
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TscAI CASTG 3 cut(s) 102, 205, 244
TseI GCWGC 1 cut(s) 335
TspDTI ATGAA 1 cut(s) 246
TspRI CASTG 3 cut(s) 102, 205, 244
XmnI GAANNNNTTC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.