Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006907

Physical Location & Seq

Genomic Coordinates Reverse (-)

23681925 .. 23682462

Gene Structure 538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG238000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCTGAAATACTACGTCTATTTTGATGGAGGGGTGAAGGAAGGAAGTGATGGAATGGTAGGGAACGAAGGTATCTTTGTCGGAATGGTGGGCACTGGAGTGACTGGGAGTGGAGGAAGAGTGACCTTAGGAGCAGCCGGCACGGTTGGGAGGGTTGGCTTTGGCAAAGAGGGGATTTGGATGCTTGGTAGTGGTGGCATTGTGGTTTTGGGCAGAGATGGGATGGGGTTGATCGGAAATGGTGGCAATGTAGGTTTCGGCAGGGAAGGTAGGGAAGGCATTGCAACCTTGGGAAGAGATGGAATTGTAGGCACTGGTAATGCCGTAGCCTGCAGAAGGTTTCGGGCTGCGAAGCTCGTATCAATGCTAGATACACACAATGCTGCTACCATCAAAGATAACAGGAAACAGCGCTTGAAACTAGCCATCTTGGTTGATAGGGACGAGATTGAACTAATATATAGTTGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.25

Weight (kDa)

9.26

Isoelectric Point (pI)

11.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19790 FvH4_3g12580 FvH4_7g18920 FvH4_7g19270
prunus_persica	Prupe.6G198400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363111 RchiOBHm_Chr2g0111361
rosa_laevigata	RLG00000017889 RLG00000027593 RLG00000027594 RLG00000027617
rosa_roxburghii	Rroxscaffold_4G00293710
rosa_rugosa	Rorug01G0301900 Rorug01G0304500 Rorug01G0304600 Rorug02G0173100
rosa_samantha	Rh1AG310800 Rh1BG273900 Rh1BG276900 Rh1CG293500 Rh1DG304700 Rh1DG307500 Rh2AG226200 Rh2BG238000 Rh2CG229300 Rh2DG233700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	2 cut(s)	418, 452
AleI	CACNNNNGTG	1 cut(s)	98
AluBI	AGCT	1 cut(s)	355
AluI	AGCT	1 cut(s)	355
Aor51HI	AGCGCT	1 cut(s)	413
ApeKI	GCWGC	3 cut(s)	134, 347, 383
AspLEI	GCGC	1 cut(s)	414
AsuHPI	GGTGA	1 cut(s)	46
AxyI	CCTNAGG	1 cut(s)	127
BaeGI	GKGCMC	1 cut(s)	95
BaeI	ACNNNNGTAYC	2 cut(s)	55, 88
BbvI	GCAGC	3 cut(s)	146, 334, 370
BccI	CCATC	7 cut(s)	20, 44, 212, 217, 293, 398, 434
BceAI	ACGGC	1 cut(s)	308
BfaI	CTAG	2 cut(s)	368, 422
BfmI	CTRYAG	1 cut(s)	331
BfoI	RGCGCY	1 cut(s)	415
BisI	GCNGC	3 cut(s)	135, 348, 384
BlsI	GCNGC	3 cut(s)	136, 349, 385
BmrI	ACTGGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	3 cut(s)	100, 109, 319
Bse21I	CCTNAGG	1 cut(s)	127
Bse3DI	GCAATG	2 cut(s)	253, 279
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	2 cut(s)	186, 228
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	2 cut(s)	253, 279
BseNI	ACTGG	3 cut(s)	100, 109, 319
BseSI	GKGCMC	1 cut(s)	95
BseXI	GCAGC	3 cut(s)	146, 334, 370
BsiSI	CCGG	1 cut(s)	138
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	455
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp143I	GATC	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	335
BsrDI	GCAATG	2 cut(s)	253, 279
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	3 cut(s)	100, 109, 319
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	2 cut(s)	112, 289
BstC8I	GCNNGC	2 cut(s)	139, 331
BstDEI	CTNAG	1 cut(s)	127
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	186, 228
BstH2I	RGCGCY	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	1 cut(s)	234
BstMBI	GATC	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	146, 334, 370
Bsu36I	CCTNAGG	1 cut(s)	127
BtsCI	GGATG	2 cut(s)	186, 228
BtsIMutI	CAGTG	2 cut(s)	93, 312
Cac8I	GCNNGC	2 cut(s)	139, 331
CfoI	GCGC	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	137
CviJI	RGCY	6 cut(s)	137, 159, 329, 347, 355, 425
CviKI_1	RGCY	6 cut(s)	137, 159, 329, 347, 355, 425
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	112, 289
EarI	CTCTTC	2 cut(s)	112, 289
Eco130I	CCWWGG	1 cut(s)	288
Eco47III	AGCGCT	1 cut(s)	413
Eco81I	CCTNAGG	1 cut(s)	127
EcoNI	CCTNNNNNAGG	1 cut(s)	334
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
FaiI	YATR	2 cut(s)	460, 462
FaqI	GGGAC	1 cut(s)	455
Fnu4HI	GCNGC	3 cut(s)	135, 348, 384
FokI	GGATG	2 cut(s)	193, 235
Fsp4HI	GCNGC	3 cut(s)	135, 348, 384
FspBI	CTAG	2 cut(s)	368, 422
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	3 cut(s)	135, 348, 384
GsuI	CTGGAG	1 cut(s)	117
HaeII	RGCGCY	1 cut(s)	415
HapII	CCGG	1 cut(s)	138
HhaI	GCGC	1 cut(s)	414
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	83, 236
Hpy188III	TCNNGA	1 cut(s)	471
HpyAV	CCTTC	6 cut(s)	31, 35, 62, 260, 269, 330
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	284, 333
HpyF3I	CTNAG	1 cut(s)	127
HpySE526I	ACGT	1 cut(s)	15
HspAI	GCGC	1 cut(s)	412
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
Kzo9I	GATC	1 cut(s)	231
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	7 cut(s)	81, 90, 151, 247, 300, 343, 388
Lsp1109I	GCAGC	3 cut(s)	146, 334, 370
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	2 cut(s)	368, 422
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	100, 121
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	2 cut(s)	129, 306
MhlI	GDGCHC	1 cut(s)	95
MluCI	AATT	1 cut(s)	303
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	4 cut(s)	23, 107, 144, 163
MroNI	GCCGGC	1 cut(s)	137
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	1 cut(s)	138
NaeI	GCCGGC	1 cut(s)	139
NdeII	GATC	1 cut(s)	231
NgoMIV	GCCGGC	1 cut(s)	137
NmuCI	GTSAC	2 cut(s)	100, 121
OliI	CACNNNNGTG	1 cut(s)	98
PdiI	GCCGGC	1 cut(s)	139
PkrI	GCNGC	3 cut(s)	136, 349, 385
PstI	CTGCAG	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	98
SatI	GCNGC	3 cut(s)	135, 348, 384
Sau3AI	GATC	1 cut(s)	231
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	8 cut(s)	18, 73, 128, 256, 271, 290, 341, 357
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	331
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	1 cut(s)	303
SspMI	CTAG	2 cut(s)	368, 422
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	1 cut(s)	18
TasI	AATT	1 cut(s)	303
TscAI	CASTG	2 cut(s)	100, 319
TseFI	GTSAC	2 cut(s)	100, 121
TseI	GCWGC	3 cut(s)	134, 347, 383
Tsp45I	GTSAC	2 cut(s)	100, 121
TspRI	CASTG	2 cut(s)	100, 319
XagI	CCTNNNNNAGG	1 cut(s)	334
XspI	CTAG	2 cut(s)	368, 422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.