Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006907

Physical Location & Seq

Genomic Coordinates Reverse (-)

13192459 .. 13193653

Gene Structure 1195 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027617

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTTTGCTTGAAGAAGGCCAAGATTGGCCGGATTGAGCCTATTGTGTTGATCAAGGGGTGCAGGGAGCTTCAGGCTTTGGGTGTTAGGGACTCTGTGGGTTTTACTGAGCTGATACGGAATGAAGGGATTGTAGTGGGGAAGGTGGGGAATGTAGTGGCCGGAAGTGGAGGTAGAGTGAACTTGGGAGCAGTGGGAAGGTTTGGCAATGTTGGATTAGGTAGAGATGGGATTTGGGTGCTTGGCGGAGATGGGATTTGTGTTGGGGGTTTTGGCAGTGTTGGCAATGGTGGCAGCGAATTTGGCATAGGCAGTGTTGAAGGCAGTGGAGGCAATGCACCCTTGGGAATCGGAATGGACGGAATTGATGTCTGCAACAGGTGCCTGGCGCCGAAGCTCATATCAATGCTTGACAAACACAATGCTGCTACCATGATGGATAATAGGGAACAATGCTTGAAGCCTGCCATGTTGATTGAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

16.48

Weight (kDa)

8.59

Isoelectric Point (pI)

18.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006907)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19790 FvH4_3g12580 FvH4_7g18920 FvH4_7g19270
prunus_persica	Prupe.6G198400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363111 RchiOBHm_Chr2g0111361
rosa_laevigata	RLG00000017889 RLG00000027593 RLG00000027594 RLG00000027617
rosa_roxburghii	Rroxscaffold_4G00293710
rosa_rugosa	Rorug01G0301900 Rorug01G0304500 Rorug01G0304600 Rorug02G0173100
rosa_samantha	Rh1AG310800 Rh1BG273900 Rh1BG276900 Rh1CG293500 Rh1DG304700 Rh1DG307500 Rh2AG226200 Rh2BG238000 Rh2CG229300 Rh2DG233700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	381, 388
AciI	CCGC	1 cut(s)	246
AcoI	YGGCCR	2 cut(s)	28, 159
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	56
AcyI	GRCGYC	1 cut(s)	389
AgsI	TTSAA	4 cut(s)	13, 320, 460, 479
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	3 cut(s)	70, 112, 397
AluI	AGCT	3 cut(s)	70, 112, 397
AoxI	GGCC	3 cut(s)	18, 28, 159
ApeKI	GCWGC	2 cut(s)	294, 425
ApoI	RAATTY	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	391
BanI	GGYRCC	2 cut(s)	381, 388
BbvI	GCAGC	2 cut(s)	306, 412
BccI	CCATC	3 cut(s)	221, 245, 430
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	392
BisI	GCNGC	2 cut(s)	295, 426
BlsI	GCNGC	2 cut(s)	296, 427
Bme1390I	CCNGG	1 cut(s)	386
BmiI	GGNNCC	2 cut(s)	383, 390
BmrFI	CCNGG	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bse3DI	GCAATG	3 cut(s)	214, 292, 340
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	342
BseMI	GCAATG	3 cut(s)	214, 292, 340
BseMII	CTCAG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	306, 412
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	20, 30, 161
BshNI	GGYRCC	2 cut(s)	381, 388
BsiSI	CCGG	2 cut(s)	31, 162
BslFI	GGGAC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	20, 30, 161
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	3 cut(s)	20, 30, 161
BspCNI	CTCAG	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	383, 390
BspT107I	GGYRCC	2 cut(s)	381, 388
BsrDI	GCAATG	3 cut(s)	214, 292, 340
BssECI	CCNNGG	1 cut(s)	342
BssMI	GATC	1 cut(s)	51
BssNI	GRCGYC	1 cut(s)	389
BssT1I	CCWWGG	1 cut(s)	342
Bst2UI	CCWGG	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	389
BstAPI	GCANNNNNTGC	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	1 cut(s)	108
BstH2I	RGCGCY	1 cut(s)	392
BstHHI	GCGC	1 cut(s)	391
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMWI	GCNNNNNNNGC	5 cut(s)	282, 291, 303, 330, 381
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	306, 412
BsuRI	GGCC	3 cut(s)	20, 30, 161
BtsI	GCAGTG	4 cut(s)	198, 283, 319, 331
BtsIMutI	CAGTG	4 cut(s)	198, 283, 319, 331
Cac8I	GCNNGC	1 cut(s)	465
CfoI	GCGC	1 cut(s)	391
CviAII	CATG	2 cut(s)	433, 469
CviJI	RGCY	9 cut(s)	20, 30, 40, 70, 77, 112, 161, 397, 463
CviKI_1	RGCY	9 cut(s)	20, 30, 40, 70, 77, 112, 161, 397, 463
DdeI	CTNAG	1 cut(s)	108
DinI	GGCGCC	1 cut(s)	390
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
EaeI	YGGCCR	2 cut(s)	28, 159
EciI	GGCGGA	1 cut(s)	261
Eco130I	CCWWGG	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	342
EgeI	GGCGCC	1 cut(s)	390
EheI	GGCGCC	1 cut(s)	390
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	2 cut(s)	436, 472
FaiI	YATR	4 cut(s)	308, 401, 434, 470
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	2 cut(s)	432, 468
FbaI	TGATCA	1 cut(s)	51
Fnu4HI	GCNGC	2 cut(s)	295, 426
Fsp4HI	GCNGC	2 cut(s)	295, 426
GlaI	GCGC	1 cut(s)	390
GluI	GCNGC	2 cut(s)	295, 426
HaeII	RGCGCY	1 cut(s)	392
HaeIII	GGCC	3 cut(s)	20, 30, 161
HapII	CCGG	2 cut(s)	31, 162
HhaI	GCGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	389
Hin1II	CATG	2 cut(s)	436, 472
Hin6I	GCGC	1 cut(s)	389
HinP1I	GCGC	1 cut(s)	389
HinfI	GANTC	2 cut(s)	92, 348
HpaII	CCGG	2 cut(s)	31, 162
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	353
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	5 cut(s)	10, 119, 136, 192, 314
HpyCH4V	TGCA	3 cut(s)	63, 338, 375
HpyF10VI	GCNNNNNNNGC	5 cut(s)	282, 291, 303, 330, 381
HpyF3I	CTNAG	1 cut(s)	108
Hsp92I	GRCGYC	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	436, 472
HspAI	GCGC	1 cut(s)	389
KasI	GGCGCC	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	51
LmnI	GCTCC	2 cut(s)	67, 188
LpnPI	CCDG	8 cut(s)	44, 49, 59, 175, 364, 371, 398, 477
Lsp1109I	GCAGC	2 cut(s)	306, 412
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	1 cut(s)	25
MluCI	AATT	2 cut(s)	299, 363
Mly113I	GGCGCC	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	2 cut(s)	164, 323
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	2 cut(s)	31, 162
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
MwoI	GCNNNNNNNGC	5 cut(s)	282, 291, 303, 330, 381
NarI	GGCGCC	1 cut(s)	389
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	2 cut(s)	436, 472
NlaIV	GGNNCC	2 cut(s)	383, 390
PfeI	GAWTC	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	296, 427
PleI	GAGTC	1 cut(s)	86
PluTI	GGCGCC	1 cut(s)	392
PpsI	GAGTC	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	2 cut(s)	383, 390
RseI	CAYNNNNRTG	1 cut(s)	404
SatI	GCNGC	2 cut(s)	295, 426
Sau3AI	GATC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	8 cut(s)	72, 114, 147, 175, 203, 223, 383, 399
SfoI	GGCGCC	1 cut(s)	390
SmiMI	CAYNNNNRTG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	299, 363
SsiI	CCGC	1 cut(s)	246
SspDI	GGCGCC	1 cut(s)	388
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	342
TasI	AATT	2 cut(s)	299, 363
TfiI	GAWTC	1 cut(s)	348
TscAI	CASTG	4 cut(s)	198, 283, 319, 331
TseI	GCWGC	2 cut(s)	294, 425
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	2 cut(s)	133, 375
TspRI	CASTG	4 cut(s)	198, 283, 319, 331
XapI	RAATTY	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.