Rh1DG307500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006907
Physical Location & Seq
Reverse (-)
53496219 .. 53496569
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG307500.1

Sequence Viewer

Length: 351 bp
ATGTTGGGAAGTGAAGGGATTGTAGTGGGGAAGTTGGGGAATGTAGTGGCCGGAAGTGGAGGTAGAGTGAACTTGGGAGCAGTGGGAAGGTTTGGCAATGATGGATTTGGTAGAGGTGGGATTTGGGTGCTTGGCAGAGGTGGGATCTGTGTTGTGGGTTTTGGCAATGGTGGCAGAGGAGTTGGCATAGGCAGTGGAGGCACTGCACCCTTGGGAACTGGAATCAAGGGAATTGATGTCTGCAACAGGTGCCTGGCGCCAAAGCTGATGTCAATGCTCGACAAACACAATGCTGCTACCATGATAGATAATAGGGAACAATGCTTGAGGCCTGCCATTTTAGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

11.58

Weight (kDa)

9.49

Isoelectric Point (pI)

14.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 249, 256
AclWI GGATC 1 cut(s) 152
AcoI YGGCCR 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 347
AjnI CCWGG 1 cut(s) 252
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
AlwI GGATC 1 cut(s) 152
AoxI GGCC 2 cut(s) 48, 329
ApeKI GCWGC 1 cut(s) 293
ArsI GACNNNNNNTTYG 2 cut(s) 254, 286
AspLEI GCGC 1 cut(s) 259
BanI GGYRCC 2 cut(s) 249, 256
BbvI GCAGC 1 cut(s) 280
BccI CCATC 1 cut(s) 95
BciT130I CCWGG 1 cut(s) 254
BfoI RGCGCY 1 cut(s) 260
BisI GCNGC 1 cut(s) 294
BlsI GCNGC 1 cut(s) 295
Bme1390I CCNGG 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 251, 258
BmrFI CCNGG 1 cut(s) 254
BpuEI CTTGAG 1 cut(s) 346
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bse1I ACTGG 1 cut(s) 223
Bse3DI GCAATG 2 cut(s) 103, 172
BseBI CCWGG 1 cut(s) 254
BseDI CCNNGG 1 cut(s) 210
BseMI GCAATG 2 cut(s) 103, 172
BseNI ACTGG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 192
BseXI GCAGC 1 cut(s) 280
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 2 cut(s) 50, 331
BshNI GGYRCC 2 cut(s) 249, 256
BsiSI CCGG 1 cut(s) 51
BsnI GGCC 2 cut(s) 50, 331
Bsp143I GATC 1 cut(s) 144
BspANI GGCC 2 cut(s) 50, 331
BspLI GGNNCC 2 cut(s) 251, 258
BspPI GGATC 1 cut(s) 152
BspT107I GGYRCC 2 cut(s) 249, 256
BsrDI GCAATG 2 cut(s) 103, 172
BsrI ACTGG 1 cut(s) 223
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 144
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 254
BstACI GRCGYC 1 cut(s) 257
BstAPI GCANNNNNTGC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 333
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 1 cut(s) 147
BstMBI GATC 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 171, 198, 249
BstNI CCWGG 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 2 cut(s) 50, 331
BtsI GCAGTG 3 cut(s) 87, 199, 201
BtsIMutI CAGTG 3 cut(s) 87, 199, 201
Cac8I GCNNGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 259
CviAII CATG 1 cut(s) 301
CviJI RGCY 3 cut(s) 50, 265, 331
CviKI_1 RGCY 3 cut(s) 50, 265, 331
DinI GGCGCC 1 cut(s) 258
DpnI GATC 1 cut(s) 146
DpnII GATC 1 cut(s) 144
EaeI YGGCCR 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 210
Eco147I AGGCCT 1 cut(s) 331
EcoRII CCWGG 1 cut(s) 252
EcoT14I CCWWGG 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 304
FaiI YATR 2 cut(s) 188, 302
FatI CATG 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 294
Fsp4HI GCNGC 1 cut(s) 294
GlaI GCGC 1 cut(s) 258
GluI GCNGC 1 cut(s) 294
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 2 cut(s) 50, 331
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 259
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 1 cut(s) 222
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 70
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 2 cut(s) 8, 81
HpyCH4V TGCA 2 cut(s) 206, 243
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 198, 249
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 1 cut(s) 257
KasI GGCGCC 1 cut(s) 256
Kzo9I GATC 1 cut(s) 144
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 6 cut(s) 64, 204, 232, 239, 266, 345
Lsp1109I GCAGC 1 cut(s) 280
MalI GATC 1 cut(s) 146
MboI GATC 1 cut(s) 144
MflI RGATCY 1 cut(s) 144
MluCI AATT 1 cut(s) 231
Mly113I GGCGCC 1 cut(s) 257
MnlI CCTC 6 cut(s) 53, 107, 131, 170, 191, 321
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 254
MvaI CCWGG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 171, 198, 249
NarI GGCGCC 1 cut(s) 257
NdeII GATC 1 cut(s) 144
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 2 cut(s) 251, 258
PceI AGGCCT 1 cut(s) 331
PfeI GAWTC 1 cut(s) 222
PkrI GCNGC 1 cut(s) 295
PluTI GGCGCC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 252
PspGI CCWGG 1 cut(s) 252
PspN4I GGNNCC 2 cut(s) 251, 258
PsuI RGATCY 1 cut(s) 144
SatI GCNGC 1 cut(s) 294
Sau3AI GATC 1 cut(s) 144
ScrFI CCNGG 1 cut(s) 254
SetI ASST 6 cut(s) 64, 92, 118, 142, 251, 267
SfoI GGCGCC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 325
SmoI CTYRAG 1 cut(s) 325
Sse9I AATT 1 cut(s) 231
SseBI AGGCCT 1 cut(s) 331
SspDI GGCGCC 1 cut(s) 256
StuI AGGCCT 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 252
StyI CCWWGG 1 cut(s) 210
TaqI TCGA 1 cut(s) 279
TasI AATT 1 cut(s) 231
TfiI GAWTC 1 cut(s) 222
TscAI CASTG 3 cut(s) 87, 199, 208
TseI GCWGC 1 cut(s) 293
TspRI CASTG 3 cut(s) 87, 199, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.