RLG00000027594

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006907
Physical Location & Seq
Forward (+)
12992020 .. 12993949
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027594

Sequence Viewer

Length: 555 bp
ATGAGCGAAAAACCATGCATGGATGGACAAGTGAATATAGATAGCAATGACCTCATTGTGTTGCTCAAGTGGTGCAACAATTTTGGTGTATTGGATGTTAGGGAGTGTAGTAATTTATTGAGCGTACGTTATAGGGAAATATCGCAGATTGCTTCTCATACTGGTGAGAGGGATGGAACTGTTGGAATTGTGGTTGGAAAGGTGGGAAGTGAAGGGATCGTAGTAGGGATGGTGGGGAATGTAGTTGGAAGTGGAGGTAGAGTGAACTTAGGAGCTGTGGGAAGGTTTGGCATTGTTGGATTTGGTAGAGATGGGATTTGGGTGCTTGGCAGAGATGGGATTTGTGTTGTGGGTTTTGGCAGTGTTGGCAATTGTGGCAGTGAAGTTGGCATAGGCAGTGGAGGCAATGCACCCTTGGGAATCGGAATCGATGGAATTGATGTCTGCAACAGGTGCCTGGCGCCGAAGCTCATGTCAATGCTCGACAAACACAATGCTGCTACCATGATAGATAATAGGGAACAATGCTTGAGGCCTGCCATTTTAGTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

185

Amino Acids

19.16

Weight (kDa)

5.4

Isoelectric Point (pI)

17.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 453, 460
AclWI GGATC 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 461
AfaI GTAC 1 cut(s) 126
AgsI TTSAA 1 cut(s) 551
AjnI CCWGG 1 cut(s) 456
AluBI AGCT 2 cut(s) 275, 469
AluI AGCT 2 cut(s) 275, 469
AlwI GGATC 1 cut(s) 224
AoxI GGCC 1 cut(s) 533
ApeKI GCWGC 1 cut(s) 497
ArsI GACNNNNNNTTYG 2 cut(s) 458, 490
AspLEI GCGC 1 cut(s) 463
AsuHPI GGTGA 1 cut(s) 176
BanI GGYRCC 2 cut(s) 453, 460
BbvI GCAGC 1 cut(s) 484
BccI CCATC 6 cut(s) 17, 167, 223, 305, 329, 425
BciT130I CCWGG 1 cut(s) 458
BfoI RGCGCY 1 cut(s) 464
BisI GCNGC 1 cut(s) 498
BlsI GCNGC 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 458
BmiI GGNNCC 2 cut(s) 455, 462
BmrFI CCNGG 1 cut(s) 458
BpuEI CTTGAG 2 cut(s) 50, 550
Bsa29I ATCGAT 1 cut(s) 429
BsaHI GRCGYC 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 414
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 1 cut(s) 166
Bse3DI GCAATG 2 cut(s) 52, 412
BseBI CCWGG 1 cut(s) 458
BseCI ATCGAT 1 cut(s) 429
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 4 cut(s) 28, 100, 178, 234
BseMI GCAATG 2 cut(s) 52, 412
BseNI ACTGG 1 cut(s) 166
BseXI GCAGC 1 cut(s) 484
BshFI GGCC 1 cut(s) 535
BshNI GGYRCC 2 cut(s) 453, 460
BshVI ATCGAT 1 cut(s) 429
BsiWI CGTACG 1 cut(s) 124
BsnI GGCC 1 cut(s) 535
Bsp143I GATC 1 cut(s) 216
BspANI GGCC 1 cut(s) 535
BspDI ATCGAT 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 455, 462
BspPI GGATC 1 cut(s) 224
BspT107I GGYRCC 2 cut(s) 453, 460
BsrDI GCAATG 2 cut(s) 52, 412
BsrI ACTGG 1 cut(s) 166
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 1 cut(s) 216
BssNI GRCGYC 1 cut(s) 461
BssT1I CCWWGG 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 458
Bst4CI ACNGT 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 461
BstAPI GCANNNNNTGC 1 cut(s) 453
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 1 cut(s) 268
BstF5I GGATG 4 cut(s) 28, 100, 178, 234
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 1 cut(s) 219
BstMBI GATC 1 cut(s) 216
BstMWI GCNNNNNNNGC 4 cut(s) 366, 375, 402, 453
BstNI CCWGG 1 cut(s) 458
BstSCI CCNGG 1 cut(s) 456
BstV1I GCAGC 1 cut(s) 484
Bsu15I ATCGAT 1 cut(s) 429
BsuRI GGCC 1 cut(s) 535
BsuTUI ATCGAT 1 cut(s) 429
BtsCI GGATG 4 cut(s) 28, 100, 178, 234
BtsI GCAGTG 3 cut(s) 367, 385, 403
BtsIMutI CAGTG 3 cut(s) 367, 385, 403
Cac8I GCNNGC 1 cut(s) 537
CfoI GCGC 1 cut(s) 463
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 1 cut(s) 125
CviAII CATG 4 cut(s) 15, 19, 472, 505
CviJI RGCY 3 cut(s) 275, 469, 535
CviKI_1 RGCY 3 cut(s) 275, 469, 535
CviQI GTAC 1 cut(s) 125
DdeI CTNAG 1 cut(s) 268
DinI GGCGCC 1 cut(s) 462
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 414
Eco147I AGGCCT 1 cut(s) 535
EcoRII CCWGG 1 cut(s) 456
EcoT14I CCWWGG 1 cut(s) 414
EcoT22I ATGCAT 1 cut(s) 20
EgeI GGCGCC 1 cut(s) 462
EheI GGCGCC 1 cut(s) 462
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 4 cut(s) 18, 22, 475, 508
FaiI YATR 8 cut(s) 16, 20, 38, 132, 159, 392, 473, 506
FatI CATG 4 cut(s) 14, 18, 471, 504
Fnu4HI GCNGC 1 cut(s) 498
FokI GGATG 4 cut(s) 35, 107, 185, 241
Fsp4HI GCNGC 1 cut(s) 498
GlaI GCGC 1 cut(s) 462
GluI GCNGC 1 cut(s) 498
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 1 cut(s) 535
HhaI GCGC 1 cut(s) 463
Hin1I GRCGYC 1 cut(s) 461
Hin1II CATG 4 cut(s) 18, 22, 475, 508
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HinfI GANTC 2 cut(s) 420, 426
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 425
Hpy8I GTNNAC 1 cut(s) 265
HpyAV CCTTC 2 cut(s) 206, 276
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 4 cut(s) 18, 75, 410, 447
HpyF10VI GCNNNNNNNGC 4 cut(s) 366, 375, 402, 453
HpyF3I CTNAG 1 cut(s) 268
HpySE526I ACGT 1 cut(s) 127
Hsp92I GRCGYC 1 cut(s) 461
Hsp92II CATG 4 cut(s) 18, 22, 475, 508
HspAI GCGC 1 cut(s) 461
KasI GGCGCC 1 cut(s) 460
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 5 cut(s) 147, 436, 443, 470, 549
Lsp1109I GCAGC 1 cut(s) 484
MaeII ACGT 1 cut(s) 127
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MfeI CAATTG 1 cut(s) 370
MluCI AATT 5 cut(s) 79, 112, 186, 370, 435
Mly113I GGCGCC 1 cut(s) 461
MmeI TCCRAC 4 cut(s) 163, 175, 226, 277
MnlI CCTC 5 cut(s) 62, 162, 248, 395, 525
Mph1103I ATGCAT 1 cut(s) 20
MslI CAYNNNNRTG 2 cut(s) 162, 476
MspR9I CCNGG 1 cut(s) 458
MunI CAATTG 1 cut(s) 370
MvaI CCWGG 1 cut(s) 458
MwoI GCNNNNNNNGC 4 cut(s) 366, 375, 402, 453
NarI GGCGCC 1 cut(s) 461
NdeII GATC 1 cut(s) 216
NlaIII CATG 4 cut(s) 18, 22, 475, 508
NlaIV GGNNCC 2 cut(s) 455, 462
NsiI ATGCAT 1 cut(s) 20
PceI AGGCCT 1 cut(s) 535
PfeI GAWTC 2 cut(s) 420, 426
Pfl23II CGTACG 1 cut(s) 124
PkrI GCNGC 1 cut(s) 499
PluTI GGCGCC 1 cut(s) 464
Psp6I CCWGG 1 cut(s) 456
PspGI CCWGG 1 cut(s) 456
PspLI CGTACG 1 cut(s) 124
PspN4I GGNNCC 2 cut(s) 455, 462
RsaI GTAC 1 cut(s) 126
RsaNI GTAC 1 cut(s) 125
RseI CAYNNNNRTG 2 cut(s) 162, 476
SatI GCNGC 1 cut(s) 498
Sau3AI GATC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 458
SetI ASST 8 cut(s) 54, 130, 204, 259, 277, 287, 455, 471
SfoI GGCGCC 1 cut(s) 462
SmiMI CAYNNNNRTG 2 cut(s) 162, 476
SmlI CTYRAG 2 cut(s) 65, 529
SmoI CTYRAG 2 cut(s) 65, 529
Sse9I AATT 5 cut(s) 79, 112, 186, 370, 435
SseBI AGGCCT 1 cut(s) 535
SspDI GGCGCC 1 cut(s) 460
StuI AGGCCT 1 cut(s) 535
StyD4I CCNGG 1 cut(s) 456
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 429, 483
TasI AATT 5 cut(s) 79, 112, 186, 370, 435
TfiI GAWTC 2 cut(s) 420, 426
TscAI CASTG 3 cut(s) 367, 385, 403
TseI GCWGC 1 cut(s) 497
TspRI CASTG 3 cut(s) 367, 385, 403
Zsp2I ATGCAT 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.