Rorug01G0304600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006907
Physical Location & Seq
Forward (+)
42009174 .. 42010423
1250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0304600.1

Sequence Viewer

Length: 1143 bp
ATGTCGAACATTGATTCTGTCACCAAAAGCTTTGCTACCTCACTGGCTATTGCTACCAATGAGGTTGTGGACATCTCCTCCATGGCGGATGGGAGAGCACAGCGGAATGCTCAATCGTATCTTCTGGCAAGGCCTCTGACTCTGAAACCAACAAATGTTGCTGACCTGCGTAGGCATTTTCCTCGCATTTGGGTGCTGAATAAAGGCTCCAGCGTCCAGCAAAAAGCTCCGAATCGTTTTCTTTTCTCCTTTGATCTTAAGGGAGATAGAAACAAGGTATTAATGGGTGGACCGTGGAGTTTTAATCGGGCTTTGGTTGTTATTCAGCCTTATGATGGAGTGGCACCTCTGCAATCTGTAGAGATGGAGGATCTTTTCTTTTGGGTTCGGATCACCAATATGCCACGAGCATATGAGCAGAGGAAGACTACTATTGCCAATGTTGCCTTTGTTGCGGGTAAATTTCTTCATCTGGATCAAAAGCTATTTGATGCAACTCGTGATATTAGGGTTAGGGTTTCTCATGCAATTTCGAAACCCTTTTTCATGCAAAAAAACCCTAAAGTTTGCCACACCAACAAGAGGTTCACTTCTTCTTTGAGAATATGGTGGGCAAATGCAATACTTGTCATTGTGTGTATCATAAGGATGATGCATGTCTTAGGTAGCATGGCTATTCCTTCGCCGGATGGACTGTTTCACTTCCAAGGTCTTACTACCCCCATTCTTCCGCCTGTGGGAAGACCTCTTTTTGGAGGGGCTGAGACAAGTAAGGTACGCAAGCCCATTGTTATTCGTAATGCAGAGAAAAAACAAGCTAATGAGGATAATGCTTTGGCTCTGGTACCCGTGGACACTGACCAGTCTACAAAGAGGGATCGTCCATTTCCATCTCCAAATAAGCTGCAATTTTTGATGTCTGATTTAGTGGAGGGTAAAACTAGCCCTATTGCTCCCTCAAAGAAAGTGAAGATGCCTGAATTCCCTACAAAGTTTAATGCAAAATCTCTTGGATTAGTGGAGACACTAGGTGGTTTGCTAGTGCATGTGGAGGTTATGATGCCTAAACCGGTAAAAGTAGAGCTTCCTGAAGGCAAGAAGAAGAGAGGGAGGCCATTGGGAGCCAAGAAAAAAAATGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

380

Amino Acids

42.5

Weight (kDa)

10.33

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 38 - 112 9.3e-10 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
Acc65I GGTACC 1 cut(s) 844
AccB1I GGYRCC 2 cut(s) 343, 844
AccI GTMKAC 1 cut(s) 866
AciI CCGC 4 cut(s) 86, 103, 455, 731
AclWI GGATC 4 cut(s) 378, 398, 483, 885
AcsI RAATTY 2 cut(s) 461, 980
AcuI CTGAAG 1 cut(s) 1110
AdeI CACNNNGTG 1 cut(s) 1031
AfaI GTAC 2 cut(s) 777, 846
AfiI CCNNNNNNNGG 4 cut(s) 335, 582, 737, 752
AflII CTTAAG 1 cut(s) 257
AgeI ACCGGT 1 cut(s) 1069
AjuI GAANNNNNNNTTGG 2 cut(s) 569, 601
AluBI AGCT 6 cut(s) 30, 227, 484, 818, 904, 1084
AluI AGCT 6 cut(s) 30, 227, 484, 818, 904, 1084
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 2 cut(s) 758, 1016
AlwI GGATC 4 cut(s) 378, 398, 483, 885
AoxI GGCC 2 cut(s) 131, 1112
ApeKI GCWGC 1 cut(s) 904
ApoI RAATTY 2 cut(s) 461, 980
AseI ATTAAT 1 cut(s) 281
AsiGI ACCGGT 1 cut(s) 1069
Asp718I GGTACC 1 cut(s) 844
AspS9I GGNCC 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 13, 385
AsuII TTCGAA 1 cut(s) 533
AvaII GGWCC 1 cut(s) 290
BanI GGYRCC 2 cut(s) 343, 844
BauI CACGAG 2 cut(s) 405, 498
BbsI GAAGAC 2 cut(s) 431, 748
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 891
BccI CCATC 5 cut(s) 83, 329, 358, 683, 898
BcgI CGANNNNNNTGC 2 cut(s) 164, 198
BcoDI GTCTC 2 cut(s) 758, 1016
BfaI CTAG 3 cut(s) 942, 1028, 1040
BfmI CTRYAG 1 cut(s) 357
BfrI CTTAAG 1 cut(s) 257
BfuAI ACCTGC 1 cut(s) 174
BisI GCNGC 1 cut(s) 905
BlsI GCNGC 1 cut(s) 906
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 1 cut(s) 290
BmiI GGNNCC 4 cut(s) 208, 345, 846, 1123
BmsI GCATC 4 cut(s) 481, 642, 963, 1050
BpiI GAAGAC 2 cut(s) 431, 748
BpmI CTGGAG 1 cut(s) 193
Bpu14I TTCGAA 1 cut(s) 533
BsaJI CCNNGG 4 cut(s) 81, 293, 706, 849
BsaWI WCCGGW 1 cut(s) 1069
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 582, 737, 752
Bse118I RCCGGY 1 cut(s) 1069
Bse1I ACTGG 2 cut(s) 48, 862
BseDI CCNNGG 4 cut(s) 81, 293, 706, 849
BseGI GGATG 3 cut(s) 94, 654, 694
BseLI CCNNNNNNNGG 4 cut(s) 335, 582, 737, 752
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 2 cut(s) 48, 862
BseRI GAGGAG 1 cut(s) 67
BseXI GCAGC 1 cut(s) 891
BshFI GGCC 2 cut(s) 133, 1114
BshNI GGYRCC 2 cut(s) 343, 844
BshTI ACCGGT 1 cut(s) 1069
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 2 cut(s) 686, 1070
BslI CCNNNNNNNGG 4 cut(s) 335, 582, 737, 752
BsmAI GTCTC 2 cut(s) 758, 1016
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 2 cut(s) 133, 1114
Bsp119I TTCGAA 1 cut(s) 533
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 5 cut(s) 253, 370, 390, 475, 877
Bsp19I CCATGG 1 cut(s) 81
BspACI CCGC 4 cut(s) 86, 103, 455, 731
BspANI GGCC 2 cut(s) 133, 1114
BspCNI CTCAG 1 cut(s) 754
BspLI GGNNCC 4 cut(s) 208, 345, 846, 1123
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 4 cut(s) 378, 398, 483, 885
BspT104I TTCGAA 1 cut(s) 533
BspT107I GGYRCC 2 cut(s) 343, 844
BspTI CTTAAG 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 1069
BsrI ACTGG 2 cut(s) 48, 862
BssAI RCCGGY 1 cut(s) 1069
BssECI CCNNGG 4 cut(s) 81, 293, 706, 849
BssMI GATC 5 cut(s) 253, 370, 390, 475, 877
BssSI CACGAG 2 cut(s) 405, 498
BssT1I CCWWGG 2 cut(s) 81, 706
Bst2BI CACGAG 2 cut(s) 405, 498
Bst4CI ACNGT 2 cut(s) 294, 696
Bst6I CTCTTC 1 cut(s) 1097
BstAFI CTTAAG 1 cut(s) 257
BstBI TTCGAA 1 cut(s) 533
BstC8I GCNNGC 1 cut(s) 782
BstDEI CTNAG 2 cut(s) 661, 762
BstDSI CCRYGG 3 cut(s) 81, 293, 849
BstF5I GGATG 3 cut(s) 94, 654, 694
BstKTI GATC 5 cut(s) 256, 373, 393, 478, 880
BstMAI GTCTC 2 cut(s) 758, 1016
BstMBI GATC 5 cut(s) 253, 370, 390, 475, 877
BstMWI GCNNNNNNNGC 2 cut(s) 443, 452
BstNSI RCATGY 2 cut(s) 659, 1049
BstSFI CTRYAG 1 cut(s) 357
BstV1I GCAGC 1 cut(s) 891
BstV2I GAAGAC 2 cut(s) 431, 748
BstX2I RGATCY 1 cut(s) 370
BstYI RGATCY 1 cut(s) 370
BsuRI GGCC 2 cut(s) 133, 1114
BtgI CCRYGG 3 cut(s) 81, 293, 849
BtsCI GGATG 3 cut(s) 94, 654, 694
BtsIMutI CAGTG 2 cut(s) 41, 855
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 1 cut(s) 782
Cfr10I RCCGGY 1 cut(s) 1069
Cfr13I GGNCC 1 cut(s) 290
CseI GACGC 1 cut(s) 202
Csp6I GTAC 2 cut(s) 776, 845
CspAI ACCGGT 1 cut(s) 1069
CviAII CATG 6 cut(s) 82, 524, 547, 656, 670, 1046
CviQI GTAC 2 cut(s) 776, 845
DdeI CTNAG 2 cut(s) 661, 762
DpnI GATC 5 cut(s) 255, 372, 392, 477, 879
DpnII GATC 5 cut(s) 253, 370, 390, 475, 877
DraIII CACNNNGTG 1 cut(s) 1031
Eam1104I CTCTTC 1 cut(s) 1097
EarI CTCTTC 1 cut(s) 1097
EciI GGCGGA 2 cut(s) 101, 720
Eco130I CCWWGG 2 cut(s) 81, 706
Eco147I AGGCCT 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 1110
EcoRI GAATTC 1 cut(s) 980
EcoT14I CCWWGG 2 cut(s) 81, 706
EcoT22I ATGCAT 1 cut(s) 657
ErhI CCWWGG 2 cut(s) 81, 706
FaeI CATG 6 cut(s) 85, 527, 550, 659, 673, 1049
FalI AAGNNNNNCTT 2 cut(s) 1068, 1100
FatI CATG 6 cut(s) 81, 523, 546, 655, 669, 1045
FauI CCCGC 1 cut(s) 448
FauNDI CATATG 1 cut(s) 412
FblI GTMKAC 1 cut(s) 866
Fnu4HI GCNGC 1 cut(s) 905
FokI GGATG 3 cut(s) 101, 661, 701
Fsp4HI GCNGC 1 cut(s) 905
FspBI CTAG 3 cut(s) 942, 1028, 1040
GluI GCNGC 1 cut(s) 905
GsuI CTGGAG 1 cut(s) 193
HaeIII GGCC 2 cut(s) 133, 1114
HapII CCGG 2 cut(s) 686, 1070
HgaI GACGC 1 cut(s) 202
Hin1II CATG 6 cut(s) 85, 527, 550, 659, 673, 1049
HindIII AAGCTT 1 cut(s) 28
HinfI GANTC 3 cut(s) 14, 139, 232
HpaII CCGG 2 cut(s) 686, 1070
HphI GGTGA 2 cut(s) 13, 385
Hpy166II GTNNAC 5 cut(s) 70, 290, 588, 853, 867
Hpy188I TCNGA 5 cut(s) 138, 144, 231, 390, 922
Hpy188III TCNNGA 3 cut(s) 473, 500, 1088
Hpy8I GTNNAC 5 cut(s) 70, 290, 588, 853, 867
HpyAV CCTTC 2 cut(s) 690, 1085
HpyCH4III ACNGT 2 cut(s) 294, 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 452
HpyF3I CTNAG 2 cut(s) 661, 762
Hsp92II CATG 6 cut(s) 85, 527, 550, 659, 673, 1049
KpnI GGTACC 1 cut(s) 848
Kzo9I GATC 5 cut(s) 253, 370, 390, 475, 877
LmnI GCTCC 4 cut(s) 212, 232, 958, 1121
Lsp1109I GCAGC 1 cut(s) 891
LweI GCATC 4 cut(s) 481, 642, 963, 1050
MaeI CTAG 3 cut(s) 942, 1028, 1040
MaeIII GTNAC 1 cut(s) 19
MalI GATC 5 cut(s) 255, 372, 392, 477, 879
MboI GATC 5 cut(s) 253, 370, 390, 475, 877
MboII GAAGA 9 cut(s) 113, 436, 458, 585, 719, 753, 982, 1111, 1114
MflI RGATCY 1 cut(s) 370
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 4 cut(s) 461, 528, 908, 980
MlyI GAGTC 1 cut(s) 133
Mph1103I ATGCAT 1 cut(s) 657
MseI TTAA 4 cut(s) 258, 281, 303, 996
MslI CAYNNNNRTG 3 cut(s) 191, 398, 647
MspA1I CMGCKG 1 cut(s) 103
MspCI CTTAAG 1 cut(s) 257
MspI CCGG 2 cut(s) 686, 1070
Mva1269I GAATGC 1 cut(s) 112
MwoI GCNNNNNNNGC 2 cut(s) 443, 452
NcoI CCATGG 1 cut(s) 81
NdeI CATATG 1 cut(s) 412
NdeII GATC 5 cut(s) 253, 370, 390, 475, 877
NlaIII CATG 6 cut(s) 85, 527, 550, 659, 673, 1049
NlaIV GGNNCC 4 cut(s) 208, 345, 846, 1123
NmuCI GTSAC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 657
NspI RCATGY 2 cut(s) 659, 1049
NspV TTCGAA 1 cut(s) 533
PceI AGGCCT 1 cut(s) 133
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 14, 232
PinAI ACCGGT 1 cut(s) 1069
PkrI GCNGC 1 cut(s) 906
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
PshBI ATTAAT 1 cut(s) 281
PspN4I GGNNCC 4 cut(s) 208, 345, 846, 1123
PspPI GGNCC 1 cut(s) 290
PsuI RGATCY 1 cut(s) 370
RsaI GTAC 2 cut(s) 777, 846
RsaNI GTAC 2 cut(s) 776, 845
RseI CAYNNNNRTG 3 cut(s) 191, 398, 647
SaqAI TTAA 4 cut(s) 258, 281, 303, 996
SatI GCNGC 1 cut(s) 905
Sau3AI GATC 5 cut(s) 253, 370, 390, 475, 877
Sau96I GGNCC 1 cut(s) 290
SchI GAGTC 1 cut(s) 133
SduI GDGCHC 1 cut(s) 100
SfaNI GCATC 4 cut(s) 481, 642, 963, 1050
SfcI CTRYAG 1 cut(s) 357
SfuI TTCGAA 1 cut(s) 533
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 3 cut(s) 191, 398, 647
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 4 cut(s) 461, 528, 908, 980
SseBI AGGCCT 1 cut(s) 133
SsiI CCGC 4 cut(s) 86, 103, 455, 731
SspMI CTAG 3 cut(s) 942, 1028, 1040
StuI AGGCCT 1 cut(s) 133
StyI CCWWGG 2 cut(s) 81, 706
TaaI ACNGT 2 cut(s) 294, 696
TaqI TCGA 2 cut(s) 5, 533
TasI AATT 4 cut(s) 461, 528, 908, 980
TfiI GAWTC 2 cut(s) 14, 232
Tru1I TTAA 4 cut(s) 258, 281, 303, 996
Tru9I TTAA 4 cut(s) 258, 281, 303, 996
TscAI CASTG 2 cut(s) 48, 862
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 904
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 2 cut(s) 458, 535
TspRI CASTG 2 cut(s) 48, 862
Vha464I CTTAAG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 290
VspI ATTAAT 1 cut(s) 281
XapI RAATTY 2 cut(s) 461, 980
XceI RCATGY 2 cut(s) 659, 1049
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 866
XspI CTAG 3 cut(s) 942, 1028, 1040
Zsp2I ATGCAT 1 cut(s) 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.