RLG00000017889

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0006907
Physical Location & Seq
Forward (+)
22663134 .. 22663617
484 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017889

Sequence Viewer

Length: 420 bp
ATGGTAGGGAACGAAGGTATCTTTGTAGGAATGGTGGGCAATGGAGTGACTGGAAGTGGAGGAAGAGTGACCTTAGGAGCAGCCGGCATGGTTGGGAGGGTTGGCTTTGGCAAAGAGGGGATTTGGGTGCTTGGTAGTGGTGGCAGTGTGGTTTTGGGCAGAGATGGGATGGGGTTGATCGGAAATGGTGGCAATGTAGGTTTCGGCGGGGAAGGTAAAGGAGGCATTGCAACCTTGGGAAGAGATGGAATTGTAGGCACTGGTAATGCCGTAGCCTGCAGAAGGTTTCGGGATGCGAAGCTCGTATCAATGCTAGATAAACACAATGCTGCTACCATCAAAGATAACAGGAAACAACGCTTGAAACTAGCCATCCTGGTTGATAGGGACGAGATAGAACTAATATATAGTTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.09

Weight (kDa)

9.62

Isoelectric Point (pI)

9.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 282
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 1 cut(s) 375
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
ApeKI GCWGC 2 cut(s) 80, 329
AxyI CCTNAGG 1 cut(s) 73
BaeI ACNNNNGTAYC 1 cut(s) 34
BbvI GCAGC 2 cut(s) 92, 316
BccI CCATC 5 cut(s) 158, 163, 239, 344, 380
BceAI ACGGC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 377
BfaI CTAG 2 cut(s) 314, 368
BfmI CTRYAG 1 cut(s) 277
BisI GCNGC 2 cut(s) 81, 330
BlsI GCNGC 2 cut(s) 82, 331
Bme1390I CCNGG 1 cut(s) 377
BmrFI CCNGG 1 cut(s) 377
BmsI GCATC 1 cut(s) 283
BsaJI CCNNGG 1 cut(s) 234
BsaXI ACNNNNNCTCC 2 cut(s) 51, 81
Bsc4I CCNNNNNNNGG 1 cut(s) 282
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 55, 265
Bse21I CCTNAGG 1 cut(s) 73
Bse3DI GCAATG 3 cut(s) 46, 199, 225
BseBI CCWGG 1 cut(s) 377
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 3 cut(s) 174, 298, 372
BseLI CCNNNNNNNGG 1 cut(s) 282
BseMI GCAATG 3 cut(s) 46, 199, 225
BseNI ACTGG 2 cut(s) 55, 265
BseXI GCAGC 2 cut(s) 92, 316
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 282
BsmFI GGGAC 1 cut(s) 401
Bsp143I GATC 1 cut(s) 177
BspACI CCGC 1 cut(s) 207
BspMAI CTGCAG 1 cut(s) 281
BsrDI GCAATG 3 cut(s) 46, 199, 225
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 55, 265
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 377
Bst6I CTCTTC 2 cut(s) 58, 235
BstC8I GCNNGC 2 cut(s) 85, 277
BstDEI CTNAG 1 cut(s) 73
BstENI CCTNNNNNAGG 1 cut(s) 280
BstF5I GGATG 3 cut(s) 174, 298, 372
BstKTI GATC 1 cut(s) 180
BstMBI GATC 1 cut(s) 177
BstNI CCWGG 1 cut(s) 377
BstSCI CCNGG 1 cut(s) 375
BstSFI CTRYAG 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 92, 316
Bsu36I CCTNAGG 1 cut(s) 73
BtsCI GGATG 3 cut(s) 174, 298, 372
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 151, 258
Cac8I GCNNGC 2 cut(s) 85, 277
Cfr10I RCCGGY 1 cut(s) 83
CviAII CATG 1 cut(s) 88
CviJI RGCY 5 cut(s) 83, 105, 275, 301, 371
CviKI_1 RGCY 5 cut(s) 83, 105, 275, 301, 371
DdeI CTNAG 1 cut(s) 73
DpnI GATC 1 cut(s) 179
DpnII GATC 1 cut(s) 177
Eam1104I CTCTTC 2 cut(s) 58, 235
EarI CTCTTC 2 cut(s) 58, 235
Eco130I CCWWGG 1 cut(s) 234
Eco81I CCTNAGG 1 cut(s) 73
EcoNI CCTNNNNNAGG 1 cut(s) 280
EcoRII CCWGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 234
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 1 cut(s) 91
FaiI YATR 3 cut(s) 89, 406, 408
FaqI GGGAC 1 cut(s) 401
FatI CATG 1 cut(s) 87
FauI CCCGC 1 cut(s) 200
Fnu4HI GCNGC 2 cut(s) 81, 330
FokI GGATG 3 cut(s) 181, 305, 359
Fsp4HI GCNGC 2 cut(s) 81, 330
FspBI CTAG 2 cut(s) 314, 368
GluI GCNGC 2 cut(s) 81, 330
HapII CCGG 1 cut(s) 84
Hin1II CATG 1 cut(s) 91
HpaII CCGG 1 cut(s) 84
Hpy188I TCNGA 1 cut(s) 182
Hpy188III TCNNGA 2 cut(s) 290, 417
HpyAV CCTTC 3 cut(s) 8, 206, 276
HpyCH4V TGCA 2 cut(s) 230, 279
HpyF3I CTNAG 1 cut(s) 73
Hsp92II CATG 1 cut(s) 91
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Kzo9I GATC 1 cut(s) 177
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 7 cut(s) 36, 97, 246, 289, 334, 362, 389
Lsp1109I GCAGC 2 cut(s) 92, 316
LweI GCATC 1 cut(s) 283
MaeI CTAG 2 cut(s) 314, 368
MaeIII GTNAC 2 cut(s) 46, 67
MalI GATC 1 cut(s) 179
MboI GATC 1 cut(s) 177
MboII GAAGA 2 cut(s) 75, 252
MluCI AATT 1 cut(s) 249
MnlI CCTC 4 cut(s) 53, 90, 109, 215
MroNI GCCGGC 1 cut(s) 83
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 377
MvaI CCWGG 1 cut(s) 377
NaeI GCCGGC 1 cut(s) 85
NdeII GATC 1 cut(s) 177
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 1 cut(s) 91
NmuCI GTSAC 2 cut(s) 46, 67
PdiI GCCGGC 1 cut(s) 85
PkrI GCNGC 2 cut(s) 82, 331
Psp6I CCWGG 1 cut(s) 375
PspGI CCWGG 1 cut(s) 375
PstI CTGCAG 1 cut(s) 281
SatI GCNGC 2 cut(s) 81, 330
Sau3AI GATC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 377
SetI ASST 7 cut(s) 19, 74, 202, 217, 236, 287, 303
SfaNI GCATC 1 cut(s) 283
SfcI CTRYAG 1 cut(s) 277
Sse9I AATT 1 cut(s) 249
SsiI CCGC 1 cut(s) 207
SspMI CTAG 2 cut(s) 314, 368
StyD4I CCNGG 1 cut(s) 375
StyI CCWWGG 1 cut(s) 234
TasI AATT 1 cut(s) 249
TscAI CASTG 2 cut(s) 151, 265
TseFI GTSAC 2 cut(s) 46, 67
TseI GCWGC 2 cut(s) 80, 329
Tsp45I GTSAC 2 cut(s) 46, 67
TspRI CASTG 2 cut(s) 151, 265
XagI CCTNNNNNAGG 1 cut(s) 280
XspI CTAG 2 cut(s) 314, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.