RchiOBHm_Chr2g0111361

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0006907
Physical Location & Seq
Reverse (-)
22998186 .. 23000160
1975 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48495

Sequence Viewer

Length: 450 bp
ATGGAGGGGGTGAAGGAAGGAAGTGATGGAATGGTAGGGAACGAAGGTATCTTTGTCGGAATGGTGGGCACTGGAGTGACTGGAAGCGGAGGAGGAGTGACCTTAGGAGCAGCCGGCATGGTTGGGAGGGTCGGCTTTGGCAAAGAGGGGATTTGGATGCTTGGTAGTGGTGGCATTGTGGTTTTGGGCAGAGATGGGATGGGGTTGATCGTAAATGGTGGTAATGTAGGTTTTGGCAGGGAAGGTAGGGAAGGCACTGCAACCTTGGGAAGAGATGGAATTGTAGGCACTGGTAATGCCGTAGCCTGCAGAAGGTTTCGGGCTGCGAAGCTCGTATCAATGCTAGATAAACACAATGCTGCTACCATCAAAGATAACAGGAAACAGCGCTTGAAACTAGCCATCTTGGTTGATAGGGACGAGATAGAACTAATATATAGTTGTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

15.21

Weight (kDa)

9.1

Isoelectric Point (pI)

11.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 87
AfeI AGCGCT 1 cut(s) 389
AfiI CCNNNNNNNGG 1 cut(s) 312
AgsI TTSAA 1 cut(s) 394
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Aor51HI AGCGCT 1 cut(s) 389
ApeKI GCWGC 3 cut(s) 110, 323, 359
AspLEI GCGC 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 22
AxyI CCTNAGG 1 cut(s) 103
BaeGI GKGCMC 1 cut(s) 71
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BbvI GCAGC 3 cut(s) 122, 310, 346
BccI CCATC 6 cut(s) 20, 188, 193, 269, 374, 410
BceAI ACGGC 1 cut(s) 284
BfaI CTAG 2 cut(s) 344, 398
BfmI CTRYAG 1 cut(s) 307
BfoI RGCGCY 1 cut(s) 391
BisI GCNGC 3 cut(s) 111, 324, 360
BlsI GCNGC 3 cut(s) 112, 325, 361
BmsI GCATC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse118I RCCGGY 1 cut(s) 113
Bse1I ACTGG 3 cut(s) 76, 85, 295
Bse21I CCTNAGG 1 cut(s) 103
BseDI CCNNGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 162, 204
BseLI CCNNNNNNNGG 1 cut(s) 312
BseNI ACTGG 3 cut(s) 76, 85, 295
BseRI GAGGAG 2 cut(s) 105, 108
BseSI GKGCMC 1 cut(s) 71
BseXI GCAGC 3 cut(s) 122, 310, 346
BsiSI CCGG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 431
BslI CCNNNNNNNGG 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 431
Bsp1286I GDGCHC 1 cut(s) 71
Bsp143I GATC 1 cut(s) 207
BspACI CCGC 1 cut(s) 87
BspMAI CTGCAG 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 113
BsrI ACTGG 3 cut(s) 76, 85, 295
BssAI RCCGGY 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 115, 307
BstDEI CTNAG 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 310
BstF5I GGATG 2 cut(s) 162, 204
BstH2I RGCGCY 1 cut(s) 391
BstHHI GCGC 1 cut(s) 390
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BstSFI CTRYAG 1 cut(s) 307
BstSLI GKGCMC 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 122, 310, 346
Bsu36I CCTNAGG 1 cut(s) 103
BtsCI GGATG 2 cut(s) 162, 204
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 3 cut(s) 69, 255, 288
Cac8I GCNNGC 2 cut(s) 115, 307
CfoI GCGC 1 cut(s) 390
Cfr10I RCCGGY 1 cut(s) 113
CviAII CATG 1 cut(s) 118
CviJI RGCY 6 cut(s) 113, 135, 305, 323, 331, 401
CviKI_1 RGCY 6 cut(s) 113, 135, 305, 323, 331, 401
DdeI CTNAG 1 cut(s) 103
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 264
Eco47III AGCGCT 1 cut(s) 389
Eco81I CCTNAGG 1 cut(s) 103
EcoNI CCTNNNNNAGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 1 cut(s) 121
FaiI YATR 3 cut(s) 119, 436, 438
FaqI GGGAC 1 cut(s) 431
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 3 cut(s) 111, 324, 360
FokI GGATG 2 cut(s) 169, 211
Fsp4HI GCNGC 3 cut(s) 111, 324, 360
FspBI CTAG 2 cut(s) 344, 398
GlaI GCGC 1 cut(s) 389
GluI GCNGC 3 cut(s) 111, 324, 360
GsuI CTGGAG 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 391
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 390
Hin1II CATG 1 cut(s) 121
Hin6I GCGC 1 cut(s) 388
HinP1I GCGC 1 cut(s) 388
HpaII CCGG 1 cut(s) 114
HphI GGTGA 1 cut(s) 22
Hpy188I TCNGA 1 cut(s) 59
Hpy188III TCNNGA 1 cut(s) 447
HpyAV CCTTC 6 cut(s) 7, 11, 38, 236, 245, 306
HpyCH4V TGCA 2 cut(s) 260, 309
HpyF3I CTNAG 1 cut(s) 103
Hsp92II CATG 1 cut(s) 121
HspAI GCGC 1 cut(s) 388
KroI GCCGGC 1 cut(s) 113
KroNI GCCGGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 207
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 7 cut(s) 57, 66, 127, 223, 276, 319, 364
Lsp1109I GCAGC 3 cut(s) 122, 310, 346
LweI GCATC 1 cut(s) 147
MaeI CTAG 2 cut(s) 344, 398
MaeIII GTNAC 2 cut(s) 76, 97
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 1 cut(s) 282
MhlI GDGCHC 1 cut(s) 71
MluCI AATT 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 37
MnlI CCTC 4 cut(s) 83, 86, 120, 139
MroNI GCCGGC 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 74
MspI CCGG 1 cut(s) 114
NaeI GCCGGC 1 cut(s) 115
NdeII GATC 1 cut(s) 207
NgoMIV GCCGGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 76, 97
OliI CACNNNNGTG 1 cut(s) 74
PdiI GCCGGC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 112, 325, 361
PstI CTGCAG 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 74
SatI GCNGC 3 cut(s) 111, 324, 360
Sau3AI GATC 1 cut(s) 207
SduI GDGCHC 1 cut(s) 71
SetI ASST 7 cut(s) 49, 104, 232, 247, 266, 317, 333
SfaNI GCATC 1 cut(s) 147
SfcI CTRYAG 1 cut(s) 307
SmiMI CAYNNNNRTG 1 cut(s) 74
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 87
SspMI CTAG 2 cut(s) 344, 398
StyI CCWWGG 1 cut(s) 264
TasI AATT 1 cut(s) 279
TscAI CASTG 3 cut(s) 76, 262, 295
TseFI GTSAC 2 cut(s) 76, 97
TseI GCWGC 3 cut(s) 110, 323, 359
Tsp45I GTSAC 2 cut(s) 76, 97
TspRI CASTG 3 cut(s) 76, 262, 295
XagI CCTNNNNNAGG 1 cut(s) 310
XspI CTAG 2 cut(s) 344, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.