Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0007480

Physical Location & Seq

Genomic Coordinates Reverse (-)

12264879 .. 12266093

Gene Structure 1215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g20082.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGGAAATTGCTCCGGCAGGGGGTCGACCATACGTGGTTGTTTCAATCTTGTCAGTGGTGGCATTCTGAAACGTTCTATTCCGTACAAATTAAAGAGGGTGGTACTTCCCTGTGATTGCATGGATGATGACCATGATTCGATGGTGGTCTGCAATGGTGGTGCGGCAACGGACCTACACCCAAATACGTTATTCCCCTTTAGGCCGGGTTCGTGGGGTGACTCCTTCAAGTCCATTGGTTGTGGGCCCAGCTCGAGCGTAGTGTGGCCCGTGCGATCGCACGAGGCCCAGACCAACAACAGCACATCAAAGCTAGGGCTGGAACCGAGGATCTCGGCAACTTCGGTGATGATCTCGGATGAGGAGACGGAGGGAGGAGAGGTGATGATCTCGGCAGAGGAGACGGAAGGAGGAGAGGTGATGATCTCGGCGGAGGAGACGGAGGGAGGAGAGAGAAAGGGTGGGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

16.5

Weight (kDa)

4.84

Isoelectric Point (pI)

40.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007480)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20082 FvH4_1g29103 FvH4_1g29431 FvH4_1g29732 FvH4_1g29761 FvH4_2g03391 FvH4_2g05501 FvH4_2g12792 FvH4_2g19253 FvH4_3g31261 FvH4_4g12741 FvH4_4g33447 FvH4_5g39021 FvH4_6g15231 FvH4_6g15232 FvH4_7g32351
malus_domestica	MD07G1221100.v1.1
prunus_persica	Prupe.8G084500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097291 RchiOBHm_Chr3g0497281 RchiOBHm_Chr5g0015161 RchiOBHm_Chr7g0243211 RchiOBHm_Chr7g0243231
rosa_roxburghii	Rroxscaffold_7G00175870
rosa_wichuraiana	Rw4G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	26
AciI	CCGC	2 cut(s)	164, 431
AclI	AACGTT	1 cut(s)	73
AclWI	GGATC	1 cut(s)	338
AfaI	GTAC	2 cut(s)	86, 105
AfiI	CCNNNNNNNGG	1 cut(s)	21
AgsI	TTSAA	2 cut(s)	46, 229
AluBI	AGCT	2 cut(s)	252, 313
AluI	AGCT	2 cut(s)	252, 313
Alw26I	GTCTC	3 cut(s)	359, 395, 431
AlwI	GGATC	1 cut(s)	338
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	4 cut(s)	203, 245, 266, 285
ApaI	GGGCCC	1 cut(s)	249
AsiSI	GCGATCGC	1 cut(s)	278
AspS9I	GGNCC	5 cut(s)	172, 245, 246, 267, 286
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	4 cut(s)	230, 358, 394, 430
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	172
BaeGI	GKGCMC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	249
BauI	CACGAG	1 cut(s)	281
BccI	CCATC	1 cut(s)	136
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	3 cut(s)	359, 395, 431
BfaI	CTAG	1 cut(s)	314
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	253
BmgT120I	GGNCC	5 cut(s)	172, 245, 246, 267, 286
BmiI	GGNNCC	2 cut(s)	247, 324
BmrFI	CCNGG	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	207
BsaAI	YACGTR	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	4 cut(s)	366, 396, 402, 432
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse3DI	GCAATG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	130, 364
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMI	GCAATG	1 cut(s)	160
BseRI	GAGGAG	6 cut(s)	377, 390, 413, 426, 449, 462
BseSI	GKGCMC	1 cut(s)	249
BseYI	CCCAGC	1 cut(s)	248
Bsh1285I	CGRYCG	1 cut(s)	278
BshFI	GGCC	4 cut(s)	205, 247, 268, 287
BsiEI	CGRYCG	1 cut(s)	278
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	2 cut(s)	15, 206
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmAI	GTCTC	3 cut(s)	359, 395, 431
BsmBI	CGTCTC	3 cut(s)	359, 395, 431
BsmI	GAATGC	1 cut(s)	63
BsnI	GGCC	4 cut(s)	205, 247, 268, 287
BsoBI	CYCGRG	1 cut(s)	253
Bsp120I	GGGCCC	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	5 cut(s)	275, 330, 351, 387, 423
BspACI	CCGC	2 cut(s)	164, 431
BspANI	GGCC	4 cut(s)	205, 247, 268, 287
BspLI	GGNNCC	2 cut(s)	247, 324
BspPI	GGATC	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	326
BssMI	GATC	5 cut(s)	275, 330, 351, 387, 423
BssSI	CACGAG	1 cut(s)	281
Bst2BI	CACGAG	1 cut(s)	281
BstBAI	YACGTR	1 cut(s)	35
BstF5I	GGATG	2 cut(s)	130, 364
BstKTI	GATC	5 cut(s)	278, 333, 354, 390, 426
BstMAI	GTCTC	3 cut(s)	359, 395, 431
BstMBI	GATC	5 cut(s)	275, 330, 351, 387, 423
BstMCI	CGRYCG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	205
BstSLI	GKGCMC	1 cut(s)	249
BstX2I	RGATCY	1 cut(s)	330
BstYI	RGATCY	1 cut(s)	330
BsuRI	GGCC	4 cut(s)	205, 247, 268, 287
BtsCI	GGATG	2 cut(s)	130, 364
BtsIMutI	CAGTG	1 cut(s)	61
Cfr13I	GGNCC	5 cut(s)	172, 245, 246, 267, 286
Csp6I	GTAC	2 cut(s)	85, 104
CviAII	CATG	2 cut(s)	121, 134
CviJI	RGCY	8 cut(s)	205, 247, 252, 268, 287, 313, 319, 466
CviKI_1	RGCY	8 cut(s)	205, 247, 252, 268, 287, 313, 319, 466
CviQI	GTAC	2 cut(s)	85, 104
DpnI	GATC	5 cut(s)	277, 332, 353, 389, 425
DpnII	GATC	5 cut(s)	275, 330, 351, 387, 423
EciI	GGCGGA	1 cut(s)	446
Eco24I	GRGCYC	1 cut(s)	249
Eco47I	GGWCC	1 cut(s)	172
Eco88I	CYCGRG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	249
Esp3I	CGTCTC	3 cut(s)	359, 395, 431
FaeI	CATG	2 cut(s)	124, 137
FaiI	YATR	3 cut(s)	32, 122, 135
FatI	CATG	2 cut(s)	120, 133
FblI	GTMKAC	1 cut(s)	26
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	137, 371
FriOI	GRGCYC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	252
HaeIII	GGCC	4 cut(s)	205, 247, 268, 287
HapII	CCGG	2 cut(s)	15, 206
Hin1II	CATG	2 cut(s)	124, 137
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	2 cut(s)	137, 221
HpaII	CCGG	2 cut(s)	15, 206
HphI	GGTGA	4 cut(s)	230, 358, 394, 430
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	2 cut(s)	69, 358
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	2 cut(s)	235, 401
HpyCH4IV	ACGT	3 cut(s)	34, 73, 188
HpyCH4V	TGCA	2 cut(s)	120, 153
HpySE526I	ACGT	3 cut(s)	34, 73, 188
Hsp92II	CATG	2 cut(s)	124, 137
Kzo9I	GATC	5 cut(s)	275, 330, 351, 387, 423
LmnI	GCTCC	1 cut(s)	17
LpnPI	CCDG	7 cut(s)	4, 28, 124, 219, 262, 302, 305
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	3 cut(s)	34, 73, 188
MaeIII	GTNAC	1 cut(s)	218
MalI	GATC	5 cut(s)	277, 332, 353, 389, 425
MboI	GATC	5 cut(s)	275, 330, 351, 387, 423
MflI	RGATCY	1 cut(s)	330
MhlI	GDGCHC	1 cut(s)	249
MluCI	AATT	2 cut(s)	7, 89
MlyI	GAGTC	1 cut(s)	215
MseI	TTAA	1 cut(s)	92
MspI	CCGG	2 cut(s)	15, 206
MspR9I	CCNGG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	63
NciI	CCSGG	1 cut(s)	207
NdeII	GATC	5 cut(s)	275, 330, 351, 387, 423
NlaIII	CATG	2 cut(s)	124, 137
NlaIV	GGNNCC	2 cut(s)	247, 324
NmeAIII	GCCGAG	3 cut(s)	314, 371, 407
NmuCI	GTSAC	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	253
PctI	GAATGC	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	166
Ple19I	CGATCG	1 cut(s)	278
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
Ppu21I	YACGTR	1 cut(s)	35
Psp1406I	AACGTT	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	248
PspN4I	GGNNCC	2 cut(s)	247, 324
PspOMI	GGGCCC	1 cut(s)	245
PspPI	GGNCC	5 cut(s)	172, 245, 246, 267, 286
PspXI	VCTCGAGB	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	330
PvuI	CGATCG	1 cut(s)	278
RgaI	GCGATCGC	1 cut(s)	278
RsaI	GTAC	2 cut(s)	86, 105
RsaNI	GTAC	2 cut(s)	85, 104
SalI	GTCGAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	5 cut(s)	275, 330, 351, 387, 423
Sau96I	GGNCC	5 cut(s)	172, 245, 246, 267, 286
SchI	GAGTC	1 cut(s)	215
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	8 cut(s)	37, 76, 177, 191, 254, 315, 384, 420
SfaAI	GCGATCGC	1 cut(s)	278
Sfr274I	CTCGAG	1 cut(s)	253
SgfI	GCGATCGC	1 cut(s)	278
SinI	GGWCC	1 cut(s)	172
SlaI	CTCGAG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	253
SmoI	CTYRAG	1 cut(s)	253
Sse9I	AATT	2 cut(s)	7, 89
SsiI	CCGC	2 cut(s)	164, 431
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	205
TaiI	ACGT	3 cut(s)	37, 76, 191
TaqI	TCGA	3 cut(s)	26, 140, 254
TasI	AATT	2 cut(s)	7, 89
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	218
TspGWI	ACGGA	5 cut(s)	72, 185, 383, 419, 455
TspRI	CASTG	1 cut(s)	61
VpaK11BI	GGWCC	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	253
XmiI	GTMKAC	1 cut(s)	26
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.