RchiOBHm_Chr7g0243211
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007480
Physical Location & Seq
Reverse (-)
69525324 .. 69530165
4842 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ21796

Sequence Viewer

Length: 1470 bp
ATGAGGTTGTGCGTGCCCAACACATCTGTTCGTGAACAAGTGATCTGGGAACTGCATGGTGGTGGTGCAGCTGGTCATTTTGGTAGAGACAAGTCAATTGCCATTGTAGAAGACCGATGGCCAAGCTTAAAACGGGATGTCGCCAAGGTTATTTCTCAATGCAAGACTTGCCAAGTTTGTAAGGGTAGGAAGAAGAATGTTGGGTTGTATACTCCATTACCAGTACCACATGAACCATGGCAAGACTTGAGTATGGACTTTGTCCTTGGATTACCAAGAACGATCCGAAGCAACGACTCCATTTTTGTCGTCGTTGATCGTTTCTCCAAAATGGCTCACTTTGTTCCATGTTCCAAGACTTCTGATGCGGTACACATTGCTAAGCTTTTCTTTCAGGAGGTTGTACGACTTCATGGGTTGCCTAAAACTATTGTTTCGGACCGCGATGTGAAATTTACTAGCTATTTCTGGCGCACTTTATGGAAATTACTTAATTCAAAGCTGCAGTTTTCCTCAGCTTTCCACCCACAAACTGATGGGCAGACAGAGGCTGTTAACCAAAGTCTGGGCGAATTGCTCCGTTGTTTAGTTTGTGATCATGGACTTAGCTGGGACCAGGTTCTCCCTATGGCTGAATTTGCCTATAACAGTTCTAAAAATCGATCCACTGTTCGTAGCCCCTTTGAGATAGTGACTGGACTACTTCCTAGAAAGCCAATTGATTTGATTCCTTTGCCCCTTGAGGCACGACCTAGTGCTGAAGCTGAGTTTTTTTGTAGTCATATTCCCAACATTCATGATGACGTTAGGCGCAGAATTGCCTTGAGCAATGAAGGCTACAAGGCACACGCCGATTTAAGGAGAAGGCTTGTTGCGTTGAATGGTGATGACATGGTTTTGGTCAGGATCAAGCCTGAAAGATATACTCCTGGCATTTCTAAGAAACTTCATCCTAGAACTGCTGGTCCATACAAAGTTTTGAAGAAGATCAGTGATAATGCCTATGTCCTTGATGTACCTGAAGATATGGGCATCAATAATGTTTTTAATGTTGAGGACCTCACCTTGTACCCTGGTCACACTAACGATACAGATGCCACACCCATTGTTCAGTTTCCACGAGCACCCTGCTCGAAAGAGACCATAGAGGATATTGTTGATCATCAGATTATATCCACCAGGAATGGTGGATATCAAAAGTATCTCGTCAAATGGCAGAATAGTCCACTTTCTGATTGTACTTGGCTTACTGATGCGGAGCTGCAGTGTTTAGACCCTGACCTGTACGATCGATTTCATGCTTTTAACTTGCCGGGGTCGAGTTTTTTCAAGCCAGGGGGAGATGATGGAGGATCTACATGGCAAAGGCCATTGAAAGTCTATAAGAGATGTGGTAAAGAAGGTTCCAAGGCTCAAGCCTTGATCTGGCACTCAGTAGGCGATGATGTGTCAACATGGGAACTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

489

Amino Acids

55.31

Weight (kDa)

8.35

Isoelectric Point (pI)

34.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Integrase_H2C2 PF17921 7 - 62 5.9e-12 Integrase zinc binding domain
rve PF00665 77 - 176 1e-06 Integrase core domain
SH3_Tf2-1 PF24626 297 - 357 7.9e-17 Tf2-1-like, SH3 domain
Chromo PF00385 382 - 433 1.9e-09 Chromo (CHRromatin Organisation MOdifier) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 565
AccI GTMKAC 1 cut(s) 209
AccII CGCG 1 cut(s) 444
AciI CCGC 3 cut(s) 368, 442, 1256
AclWI GGATC 4 cut(s) 277, 657, 914, 1360
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 2 cut(s) 452, 635
AcuI CTGAAG 2 cut(s) 780, 1041
AfaI GTAC 7 cut(s) 225, 372, 405, 1017, 1070, 1240, 1286
AfiI CCNNNNNNNGG 3 cut(s) 565, 858, 1425
AgsI TTSAA 5 cut(s) 498, 880, 982, 1330, 1375
AjnI CCWGG 5 cut(s) 615, 928, 1072, 1178, 1333
AloI GAACNNNNNNTCC 2 cut(s) 949, 981
AluBI AGCT 9 cut(s) 71, 126, 385, 462, 502, 518, 609, 764, 1261
AluI AGCT 9 cut(s) 71, 126, 385, 462, 502, 518, 609, 764, 1261
Alw21I GWGCWC 1 cut(s) 1126
Alw26I GTCTC 2 cut(s) 81, 1133
AlwI GGATC 4 cut(s) 277, 657, 914, 1360
AlwNI CAGNNNCTG 1 cut(s) 551
AoxI GGCC 2 cut(s) 119, 1367
ApeKI GCWGC 3 cut(s) 68, 502, 1261
ApoI RAATTY 2 cut(s) 452, 635
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AspLEI GCGC 2 cut(s) 474, 813
AspS9I GGNCC 4 cut(s) 439, 613, 965, 1057
AsuC2I CCSGG 1 cut(s) 1314
AsuHPI GGTGA 2 cut(s) 896, 1054
AvaII GGWCC 4 cut(s) 439, 613, 965, 1057
BaeGI GKGCMC 1 cut(s) 18
BalI TGGCCA 1 cut(s) 121
BauI CACGAG 1 cut(s) 1119
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 1126
BbvCI CCTCAGC 1 cut(s) 514
BbvI GCAGC 3 cut(s) 80, 489, 1248
BccI CCATC 3 cut(s) 111, 530, 1340
BcgI CGANNNNNNTGC 6 cut(s) 1076, 1110, 1110, 1113, 1144, 1147
BciT130I CCWGG 5 cut(s) 617, 930, 1074, 1180, 1335
BclI TGATCA 2 cut(s) 595, 1159
BcnI CCSGG 1 cut(s) 1314
BcoDI GTCTC 2 cut(s) 81, 1133
BfaI CTAG 4 cut(s) 459, 708, 753, 954
BfmI CTRYAG 2 cut(s) 503, 1262
BisI GCNGC 3 cut(s) 69, 503, 1262
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 3 cut(s) 70, 504, 1263
Bme1390I CCNGG 6 cut(s) 617, 930, 1074, 1180, 1314, 1335
Bme18I GGWCC 4 cut(s) 439, 613, 965, 1057
BmgT120I GGNCC 4 cut(s) 439, 613, 965, 1057
BmiI GGNNCC 2 cut(s) 614, 1405
BmrFI CCNGG 6 cut(s) 617, 930, 1074, 1180, 1314, 1335
BmsI GCATC 4 cut(s) 355, 1041, 1084, 1243
BpiI GAAGAC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 514
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 4 cut(s) 268, 761, 844, 1398
BpuMI CCSGG 1 cut(s) 1314
Bsa29I ATCGAT 2 cut(s) 661, 1291
BsaI GGTCTC 1 cut(s) 1133
BsaJI CCNNGG 7 cut(s) 144, 236, 265, 1072, 1313, 1334, 1407
BsaXI ACNNNNNCTCC 2 cut(s) 1250, 1280
Bsc4I CCNNNNNNNGG 3 cut(s) 565, 858, 1425
Bse1I ACTGG 2 cut(s) 221, 700
Bse3DI GCAATG 2 cut(s) 375, 835
BseBI CCWGG 5 cut(s) 617, 930, 1074, 1180, 1335
BseCI ATCGAT 2 cut(s) 661, 1291
BseDI CCNNGG 7 cut(s) 144, 236, 265, 1072, 1313, 1334, 1407
BseGI GGATG 2 cut(s) 142, 949
BseLI CCNNNNNNNGG 3 cut(s) 565, 858, 1425
BseMI GCAATG 2 cut(s) 375, 835
BseMII CTCAG 3 cut(s) 528, 756, 1446
BseNI ACTGG 2 cut(s) 221, 700
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 3 cut(s) 80, 489, 1248
BseYI CCCAGC 1 cut(s) 609
BsgI GTGCAG 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 444
Bsh1285I CGRYCG 1 cut(s) 1291
BshFI GGCC 2 cut(s) 121, 1369
BshVI ATCGAT 2 cut(s) 661, 1291
BsiEI CGRYCG 1 cut(s) 1291
BsiHKAI GWGCWC 1 cut(s) 1126
BsiSI CCGG 1 cut(s) 1313
BslFI GGGAC 1 cut(s) 626
BslI CCNNNNNNNGG 3 cut(s) 565, 858, 1425
BsmAI GTCTC 2 cut(s) 81, 1133
BsmFI GGGAC 1 cut(s) 626
BsnI GGCC 2 cut(s) 121, 1369
Bso31I GGTCTC 1 cut(s) 1133
Bsp1286I GDGCHC 2 cut(s) 18, 1126
Bsp1720I GCTNAGC 1 cut(s) 381
Bsp19I CCATGG 1 cut(s) 236
BspACI CCGC 3 cut(s) 368, 442, 1256
BspANI GGCC 2 cut(s) 121, 1369
BspCNI CTCAG 3 cut(s) 527, 757, 1445
BspDI ATCGAT 2 cut(s) 661, 1291
BspFNI CGCG 1 cut(s) 444
BspHI TCATGA 1 cut(s) 796
BspLI GGNNCC 2 cut(s) 614, 1405
BspMAI CTGCAG 2 cut(s) 507, 1266
BspPI GGATC 4 cut(s) 277, 657, 914, 1360
BspTNI GGTCTC 1 cut(s) 1133
BsrDI GCAATG 2 cut(s) 375, 835
BsrI ACTGG 2 cut(s) 221, 700
BssECI CCNNGG 7 cut(s) 144, 236, 265, 1072, 1313, 1334, 1407
BssNAI GTATAC 1 cut(s) 210
BssSI CACGAG 1 cut(s) 1119
BssT1I CCWWGG 4 cut(s) 144, 236, 265, 1407
Bst1107I GTATAC 1 cut(s) 210
Bst2BI CACGAG 1 cut(s) 1119
Bst2UI CCWGG 5 cut(s) 617, 930, 1074, 1180, 1335
Bst4CI ACNGT 2 cut(s) 650, 670
BstAPI GCANNNNNTGC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 14
BstDEI CTNAG 6 cut(s) 381, 514, 605, 765, 939, 1432
BstDSI CCRYGG 1 cut(s) 236
BstF5I GGATG 2 cut(s) 142, 949
BstFNI CGCG 1 cut(s) 444
BstHHI GCGC 2 cut(s) 474, 813
BstMAI GTCTC 2 cut(s) 81, 1133
BstMCI CGRYCG 1 cut(s) 1291
BstMWI GCNNNNNNNGC 3 cut(s) 168, 638, 834
BstNI CCWGG 5 cut(s) 617, 930, 1074, 1180, 1335
BstSCI CCNGG 6 cut(s) 615, 928, 1072, 1178, 1312, 1333
BstSFI CTRYAG 2 cut(s) 503, 1262
BstSLI GKGCMC 1 cut(s) 18
BstUI CGCG 1 cut(s) 444
BstV1I GCAGC 3 cut(s) 80, 489, 1248
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 1352
BstYI RGATCY 1 cut(s) 1352
BstZ17I GTATAC 1 cut(s) 210
Bsu15I ATCGAT 2 cut(s) 661, 1291
BsuRI GGCC 2 cut(s) 121, 1369
BsuTUI ATCGAT 2 cut(s) 661, 1291
BtgI CCRYGG 1 cut(s) 236
BtgZI GCGATG 2 cut(s) 459, 1455
BtsCI GGATG 2 cut(s) 142, 949
BtsI GCAGTG 1 cut(s) 1271
BtsIMutI CAGTG 3 cut(s) 666, 997, 1271
Cac8I GCNNGC 1 cut(s) 14
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 796
CfoI GCGC 2 cut(s) 474, 813
Cfr13I GGNCC 4 cut(s) 439, 613, 965, 1057
ClaI ATCGAT 2 cut(s) 661, 1291
CpoI CGGWCCG 1 cut(s) 439
CsiI ACCWGGT 1 cut(s) 615
Csp6I GTAC 7 cut(s) 224, 371, 404, 1016, 1069, 1239, 1285
CspCI CAANNNNNGTGG 2 cut(s) 1087, 1122
CspI CGGWCCG 1 cut(s) 439
CviQI GTAC 7 cut(s) 224, 371, 404, 1016, 1069, 1239, 1285
DdeI CTNAG 6 cut(s) 381, 514, 605, 765, 939, 1432
EaeI YGGCCR 1 cut(s) 119
Eco130I CCWWGG 4 cut(s) 144, 236, 265, 1407
Eco31I GGTCTC 1 cut(s) 1133
Eco32I GATATC 1 cut(s) 1193
Eco47I GGWCC 4 cut(s) 439, 613, 965, 1057
Eco57I CTGAAG 2 cut(s) 780, 1041
EcoO109I RGGNCCY 1 cut(s) 1057
EcoRII CCWGG 5 cut(s) 615, 928, 1072, 1178, 1333
EcoRV GATATC 1 cut(s) 1193
EcoT14I CCWWGG 4 cut(s) 144, 236, 265, 1407
ErhI CCWWGG 4 cut(s) 144, 236, 265, 1407
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 626
FbaI TGATCA 2 cut(s) 595, 1159
FblI GTMKAC 1 cut(s) 209
Fnu4HI GCNGC 3 cut(s) 69, 503, 1262
FokI GGATG 2 cut(s) 149, 936
Fsp4HI GCNGC 3 cut(s) 69, 503, 1262
FspBI CTAG 4 cut(s) 459, 708, 753, 954
GlaI GCGC 2 cut(s) 473, 812
GluI GCNGC 3 cut(s) 69, 503, 1262
GsaI CCCAGC 1 cut(s) 613
HaeIII GGCC 2 cut(s) 121, 1369
HapII CCGG 1 cut(s) 1313
HhaI GCGC 2 cut(s) 474, 813
Hin6I GCGC 2 cut(s) 472, 811
HinP1I GCGC 2 cut(s) 472, 811
HincII GTYRAC 2 cut(s) 556, 1452
HindII GTYRAC 2 cut(s) 556, 1452
HindIII AAGCTT 2 cut(s) 124, 383
HinfI GANTC 2 cut(s) 296, 727
HpaI GTTAAC 1 cut(s) 556
HpaII CCGG 1 cut(s) 1313
HphI GGTGA 2 cut(s) 896, 1054
Hpy166II GTNNAC 6 cut(s) 35, 210, 373, 556, 1226, 1452
Hpy188I TCNGA 5 cut(s) 287, 364, 439, 1167, 1234
Hpy188III TCNNGA 4 cut(s) 32, 395, 797, 904
Hpy8I GTNNAC 6 cut(s) 35, 210, 373, 556, 1226, 1452
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 827, 858, 1394
HpyCH4III ACNGT 2 cut(s) 650, 670
HpyCH4IV ACGT 1 cut(s) 804
HpyCH4V TGCA 5 cut(s) 55, 68, 162, 505, 1264
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 638, 834
HpyF3I CTNAG 6 cut(s) 381, 514, 605, 765, 939, 1432
HpySE526I ACGT 1 cut(s) 804
HspAI GCGC 2 cut(s) 472, 811
Ksp22I TGATCA 2 cut(s) 595, 1159
KspAI GTTAAC 1 cut(s) 556
LmnI GCTCC 2 cut(s) 582, 1258
Lsp1109I GCAGC 3 cut(s) 80, 489, 1248
LweI GCATC 4 cut(s) 355, 1041, 1084, 1243
MabI ACCWGGT 1 cut(s) 615
MaeI CTAG 4 cut(s) 459, 708, 753, 954
MaeII ACGT 1 cut(s) 804
MaeIII GTNAC 2 cut(s) 691, 1076
MboII GAAGA 6 cut(s) 122, 202, 205, 994, 997, 1034
MfeI CAATTG 2 cut(s) 96, 717
MflI RGATCY 1 cut(s) 1352
MhlI GDGCHC 2 cut(s) 18, 1126
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 8 cut(s) 96, 452, 485, 493, 572, 635, 717, 816
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 1 cut(s) 290
MnlI CCTC 8 cut(s) 391, 523, 541, 736, 1048, 1070, 1141, 1343
Mox20I TGGCCA 1 cut(s) 121
MscI TGGCCA 1 cut(s) 121
MseI TTAA 6 cut(s) 128, 492, 555, 857, 1047, 1305
MslI CAYNNNNRTG 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 121
MspA1I CMGCKG 1 cut(s) 71
MspI CCGG 1 cut(s) 1313
MspR9I CCNGG 6 cut(s) 617, 930, 1074, 1180, 1314, 1335
MunI CAATTG 2 cut(s) 96, 717
MvaI CCWGG 5 cut(s) 617, 930, 1074, 1180, 1335
MvnI CGCG 1 cut(s) 444
MwoI GCNNNNNNNGC 3 cut(s) 168, 638, 834
NciI CCSGG 1 cut(s) 1314
NcoI CCATGG 1 cut(s) 236
NlaIV GGNNCC 2 cut(s) 614, 1405
NmuCI GTSAC 2 cut(s) 691, 1076
PagI TCATGA 1 cut(s) 796
PfeI GAWTC 1 cut(s) 727
PflFI GACNNNGTC 1 cut(s) 260
PflMI CCANNNNNTGG 1 cut(s) 565
PkrI GCNGC 3 cut(s) 70, 504, 1263
Ple19I CGATCG 1 cut(s) 1291
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
PpuMI RGGWCCY 1 cut(s) 1057
Psp5II RGGWCCY 1 cut(s) 1057
Psp6I CCWGG 5 cut(s) 615, 928, 1072, 1178, 1333
PspFI CCCAGC 1 cut(s) 609
PspGI CCWGG 5 cut(s) 615, 928, 1072, 1178, 1333
PspN4I GGNNCC 2 cut(s) 614, 1405
PspPI GGNCC 4 cut(s) 439, 613, 965, 1057
PspPPI RGGWCCY 1 cut(s) 1057
PsrI GAACNNNNNNTAC 2 cut(s) 1387, 1419
PstI CTGCAG 2 cut(s) 507, 1266
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 1 cut(s) 1352
PsyI GACNNNGTC 1 cut(s) 260
PvuI CGATCG 1 cut(s) 1291
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 7 cut(s) 225, 372, 405, 1017, 1070, 1240, 1286
RsaNI GTAC 7 cut(s) 224, 371, 404, 1016, 1069, 1239, 1285
RseI CAYNNNNRTG 1 cut(s) 60
Rsr2I CGGWCCG 1 cut(s) 439
RsrII CGGWCCG 1 cut(s) 439
SaqAI TTAA 6 cut(s) 128, 492, 555, 857, 1047, 1305
SatI GCNGC 3 cut(s) 69, 503, 1262
Sau96I GGNCC 4 cut(s) 439, 613, 965, 1057
SchI GAGTC 1 cut(s) 290
ScrFI CCNGG 6 cut(s) 617, 930, 1074, 1180, 1314, 1335
SduI GDGCHC 2 cut(s) 18, 1126
SexAI ACCWGGT 1 cut(s) 615
SfaNI GCATC 4 cut(s) 355, 1041, 1084, 1243
SfcI CTRYAG 2 cut(s) 503, 1262
SinI GGWCC 4 cut(s) 439, 613, 965, 1057
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 4 cut(s) 247, 740, 823, 1413
SmoI CTYRAG 4 cut(s) 247, 740, 823, 1413
Sse9I AATT 8 cut(s) 96, 452, 485, 493, 572, 635, 717, 816
SsiI CCGC 3 cut(s) 368, 442, 1256
SspMI CTAG 4 cut(s) 459, 708, 753, 954
StyD4I CCNGG 6 cut(s) 615, 928, 1072, 1178, 1312, 1333
StyI CCWWGG 4 cut(s) 144, 236, 265, 1407
TaaI ACNGT 2 cut(s) 650, 670
TaiI ACGT 1 cut(s) 807
TaqI TCGA 4 cut(s) 661, 1133, 1291, 1319
TaqII GACCGA 1 cut(s) 129
TasI AATT 8 cut(s) 96, 452, 485, 493, 572, 635, 717, 816
TatI WGTACW 1 cut(s) 1238
TfiI GAWTC 1 cut(s) 727
Tru1I TTAA 6 cut(s) 128, 492, 555, 857, 1047, 1305
Tru9I TTAA 6 cut(s) 128, 492, 555, 857, 1047, 1305
TscAI CASTG 3 cut(s) 673, 997, 1271
TseFI GTSAC 2 cut(s) 691, 1076
TseI GCWGC 3 cut(s) 68, 502, 1261
Tsp45I GTSAC 2 cut(s) 691, 1076
TspDTI ATGAA 6 cut(s) 246, 401, 785, 846, 938, 1286
TspGWI ACGGA 1 cut(s) 569
TspRI CASTG 3 cut(s) 673, 997, 1271
Tth111I GACNNNGTC 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 565
VpaK11BI GGWCC 4 cut(s) 439, 613, 965, 1057
XapI RAATTY 2 cut(s) 452, 635
XcmI CCANNNNNNNNNTGG 1 cut(s) 234
XmiI GTMKAC 1 cut(s) 209
XspI CTAG 4 cut(s) 459, 708, 753, 954
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.