Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007480

Physical Location & Seq

Genomic Coordinates Forward (+)

9477293 .. 9478368

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15232.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGGATTTCTTGGGAGGTTTACCGAAGGCCAAGTCTGGGAATGACTATTTATATGTTGTGGTCGATCGTTTTAGTAAAATGGTGGTTCTCATTCCTTGCAAGAAGACCATTACAGGGGCTGGTGCAGCTAAGTTATTCTTTGAGAATGTCTGGAAGCATTTTGGGTTGCCTAGTTCGATTATTTCTGATCGTGACAGCAGGTTTCTTGGTCACTTTTGGGATTCTTTGTGGGGAATGATGGATACATGCCTAAAAAGAAGTACAGCCTTTCATCCACAAACGGATGGCCAGACTGAAGTAGTTAACAGAACTATGGTGCATCTATTGCGGGGATACAATGCTAAGCATCCGAAGACTTGGGATGAGAGTCTTCCGTATTTACAGTTTGCTTTCAACAGGGCTGTTCATAGTTCTTCTGGGACATCTCCATTTGAAGCTTGTTATGGCTACTTACCGCCAAGTCCGTTTGATATGGTTTTTACTGTAGATTTGGTCTGGTTGAAGTTGAGCAAGGAACGTTTGAAACGTGAAGGTAAGAAGTTGAAGCCACTTCGGTACGGTCCTTTTCGTATTCTGCAGCAGATTGGCGACAATGCCTTCAAGCTCGAATTGCCGCCATATTTGAGCATGTATTCAGTTATCAATGCTGAGTACTTGAAGTTGTTTGAACCACCATTGCTTGATGATGATGGGGATGACAAGGTTGTTTTACCACCAGTTGATGACTTATGGTTTGACAGAGAGGAGCCATTAAAAGAGGATTGCATTTTGGAGCAGAAAGTGACAAAGACACGTCAAGGGGAACGAGCCGTATTCTGTATTGGACGCGCCGGTCAAGTTCCTAGTCAATCTAAATGGTTCAGCAAAGAAAAGGGAACTCTTGAGTTTCCTCATCTCCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

302

Amino Acids

34.56

Weight (kDa)

8.45

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
rve	PF00665	1 - 71	3.2e-06	Integrase core domain
SH3_Tf2-1	PF24626	163 - 221	2.1e-16	Tf2-1-like, SH3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007480)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20082 FvH4_1g29103 FvH4_1g29431 FvH4_1g29732 FvH4_1g29761 FvH4_2g03391 FvH4_2g05501 FvH4_2g12792 FvH4_2g19253 FvH4_3g31261 FvH4_4g12741 FvH4_4g33447 FvH4_5g39021 FvH4_6g15231 FvH4_6g15232 FvH4_7g32351
malus_domestica	MD07G1221100.v1.1
prunus_persica	Prupe.8G084500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097291 RchiOBHm_Chr3g0497281 RchiOBHm_Chr5g0015161 RchiOBHm_Chr7g0243211 RchiOBHm_Chr7g0243231
rosa_roxburghii	Rroxscaffold_7G00175870
rosa_wichuraiana	Rw4G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	831
Acc36I	ACCTGC	1 cut(s)	189
AccII	CGCG	1 cut(s)	828
AciI	CCGC	3 cut(s)	328, 455, 614
AclI	AACGTT	1 cut(s)	517
AcoI	YGGCCR	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	3 cut(s)	262, 557, 653
AfiI	CCNNNNNNNGG	2 cut(s)	36, 114
AflIII	ACRYGT	1 cut(s)	791
AgsI	TTSAA	8 cut(s)	394, 434, 502, 523, 544, 601, 658, 668
AjiI	CACGTC	1 cut(s)	794
AluBI	AGCT	3 cut(s)	128, 437, 604
AluI	AGCT	3 cut(s)	128, 437, 604
AlwNI	CAGNNNCTG	1 cut(s)	119
AoxI	GGCC	2 cut(s)	27, 286
ApeKI	GCWGC	2 cut(s)	125, 577
ArsI	GACNNNNNNTTYG	4 cut(s)	17, 49, 716, 748
AspLEI	GCGC	1 cut(s)	830
AspS9I	GGNCC	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	560
BalI	TGGCCA	1 cut(s)	288
BbsI	GAAGAC	3 cut(s)	110, 359, 362
BbvI	GCAGC	2 cut(s)	137, 589
BccI	CCATC	3 cut(s)	232, 278, 683
BceAI	ACGGC	1 cut(s)	794
BciVI	GTATCC	2 cut(s)	235, 326
BfaI	CTAG	2 cut(s)	171, 843
BfmI	CTRYAG	2 cut(s)	483, 575
BfuAI	ACCTGC	1 cut(s)	189
BfuI	GTATCC	2 cut(s)	235, 326
BisI	GCNGC	3 cut(s)	126, 578, 614
BlpI	GCTNAGC	1 cut(s)	342
BlsI	GCNGC	3 cut(s)	127, 579, 615
BmcAI	AGTACT	1 cut(s)	653
Bme18I	GGWCC	1 cut(s)	560
BmgBI	CACGTC	1 cut(s)	794
BmgT120I	GGNCC	1 cut(s)	560
BmiI	GGNNCC	1 cut(s)	747
BmsI	GCATC	2 cut(s)	328, 355
BpiI	GAAGAC	3 cut(s)	110, 359, 362
BpmI	CTGGAG	1 cut(s)	881
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	902
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 114
Bse118I	RCCGGY	1 cut(s)	830
Bse1I	ACTGG	2 cut(s)	716, 898
Bse3DI	GCAATG	1 cut(s)	674
BseGI	GGATG	5 cut(s)	271, 289, 346, 367, 700
BseLI	CCNNNNNNNGG	2 cut(s)	36, 114
BseMI	GCAATG	1 cut(s)	674
BseMII	CTCAG	1 cut(s)	639
BseNI	ACTGG	2 cut(s)	716, 898
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	2 cut(s)	137, 589
BsgI	GTGCAG	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	828
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	29, 288
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	831
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	36, 114
BsmFI	GGGAC	1 cut(s)	433
BsnI	GGCC	2 cut(s)	29, 288
Bsp143I	GATC	2 cut(s)	64, 187
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	3 cut(s)	328, 455, 614
BspANI	GGCC	2 cut(s)	29, 288
BspCNI	CTCAG	1 cut(s)	640
BspFNI	CGCG	1 cut(s)	828
BspLI	GGNNCC	1 cut(s)	747
BspMAI	CTGCAG	1 cut(s)	579
BspMI	ACCTGC	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	674
BsrFI	RCCGGY	1 cut(s)	830
BsrI	ACTGG	2 cut(s)	716, 898
BssAI	RCCGGY	1 cut(s)	830
BssMI	GATC	2 cut(s)	64, 187
Bst4CI	ACNGT	3 cut(s)	384, 484, 560
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	129, 342, 648
BstF5I	GGATG	5 cut(s)	271, 289, 346, 367, 700
BstFNI	CGCG	1 cut(s)	828
BstHHI	GCGC	1 cut(s)	830
BstKTI	GATC	2 cut(s)	67, 190
BstMBI	GATC	2 cut(s)	64, 187
BstMCI	CGRYCG	1 cut(s)	67
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 325, 610
BstNSI	RCATGY	2 cut(s)	249, 631
BstSFI	CTRYAG	2 cut(s)	483, 575
BstUI	CGCG	1 cut(s)	828
BstV1I	GCAGC	2 cut(s)	137, 589
BstV2I	GAAGAC	3 cut(s)	110, 359, 362
BsuI	GTATCC	2 cut(s)	235, 326
BsuRI	GGCC	2 cut(s)	29, 288
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	5 cut(s)	271, 289, 346, 367, 700
BveI	ACCTGC	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	119
CfoI	GCGC	1 cut(s)	830
Cfr10I	RCCGGY	1 cut(s)	830
Cfr13I	GGNCC	1 cut(s)	560
CseI	GACGC	1 cut(s)	834
Csp6I	GTAC	3 cut(s)	261, 556, 652
CviAII	CATG	2 cut(s)	246, 628
CviQI	GTAC	3 cut(s)	261, 556, 652
DdeI	CTNAG	3 cut(s)	129, 342, 648
DpnI	GATC	2 cut(s)	66, 189
DpnII	GATC	2 cut(s)	64, 187
DrdI	GACNNNNNNGTC	1 cut(s)	831
DseDI	GACNNNNNNGTC	1 cut(s)	831
EaeI	YGGCCR	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	560
Eco57I	CTGAAG	1 cut(s)	315
FaeI	CATG	2 cut(s)	249, 631
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	2 cut(s)	245, 627
FauI	CCCGC	1 cut(s)	321
Fnu4HI	GCNGC	3 cut(s)	126, 578, 614
FokI	GGATG	5 cut(s)	258, 296, 333, 374, 707
Fsp4HI	GCNGC	3 cut(s)	126, 578, 614
FspBI	CTAG	2 cut(s)	171, 843
GlaI	GCGC	1 cut(s)	829
GluI	GCNGC	3 cut(s)	126, 578, 614
GsuI	CTGGAG	1 cut(s)	881
HaeIII	GGCC	2 cut(s)	29, 288
HapII	CCGG	1 cut(s)	831
HgaI	GACGC	1 cut(s)	834
HhaI	GCGC	1 cut(s)	830
Hin1II	CATG	2 cut(s)	249, 631
Hin6I	GCGC	1 cut(s)	828
HinP1I	GCGC	1 cut(s)	828
HincII	GTYRAC	1 cut(s)	304
HindII	GTYRAC	1 cut(s)	304
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	2 cut(s)	221, 367
HpaI	GTTAAC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	831
Hpy166II	GTNNAC	2 cut(s)	20, 304
Hpy188I	TCNGA	2 cut(s)	187, 351
Hpy188III	TCNNGA	3 cut(s)	151, 191, 881
Hpy8I	GTNNAC	2 cut(s)	20, 304
HpyAV	CCTTC	3 cut(s)	19, 524, 607
HpyCH4III	ACNGT	3 cut(s)	384, 484, 560
HpyCH4IV	ACGT	3 cut(s)	517, 526, 793
HpyCH4V	TGCA	5 cut(s)	99, 125, 319, 577, 765
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 325, 610
HpyF3I	CTNAG	3 cut(s)	129, 342, 648
HpySE526I	ACGT	3 cut(s)	517, 526, 793
Hsp92II	CATG	2 cut(s)	249, 631
HspAI	GCGC	1 cut(s)	828
KspAI	GTTAAC	1 cut(s)	304
Kzo9I	GATC	2 cut(s)	64, 187
LmnI	GCTCC	2 cut(s)	745, 772
Lsp1109I	GCAGC	2 cut(s)	137, 589
LweI	GCATC	2 cut(s)	328, 355
MaeI	CTAG	2 cut(s)	171, 843
MaeII	ACGT	3 cut(s)	517, 526, 793
MaeIII	GTNAC	3 cut(s)	191, 209, 781
MalI	GATC	2 cut(s)	66, 189
MboI	GATC	2 cut(s)	64, 187
MboII	GAAGA	4 cut(s)	115, 362, 364, 405
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	1 cut(s)	608
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	1 cut(s)	376
MnlI	CCTC	4 cut(s)	8, 736, 751, 900
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	3 cut(s)	303, 752, 904
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	831
MvnI	CGCG	1 cut(s)	828
MwoI	GCNNNNNNNGC	3 cut(s)	125, 325, 610
NdeII	GATC	2 cut(s)	64, 187
NlaIII	CATG	2 cut(s)	249, 631
NlaIV	GGNNCC	1 cut(s)	747
NmuCI	GTSAC	3 cut(s)	191, 209, 781
NspI	RCATGY	2 cut(s)	249, 631
PcsI	WCGNNNNNNNCGW	1 cut(s)	523
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	3 cut(s)	127, 579, 615
Ple19I	CGATCG	1 cut(s)	67
PleI	GAGTC	1 cut(s)	375
PpsI	GAGTC	1 cut(s)	375
Psp1406I	AACGTT	1 cut(s)	517
PspN4I	GGNNCC	1 cut(s)	747
PspPI	GGNCC	1 cut(s)	560
PstI	CTGCAG	1 cut(s)	579
PstNI	CAGNNNCTG	1 cut(s)	119
PvuI	CGATCG	1 cut(s)	67
RsaI	GTAC	3 cut(s)	262, 557, 653
RsaNI	GTAC	3 cut(s)	261, 556, 652
SaqAI	TTAA	3 cut(s)	303, 752, 904
SatI	GCNGC	3 cut(s)	126, 578, 614
Sau3AI	GATC	2 cut(s)	64, 187
Sau96I	GGNCC	1 cut(s)	560
ScaI	AGTACT	1 cut(s)	653
SchI	GAGTC	1 cut(s)	376
SfaNI	GCATC	2 cut(s)	328, 355
SfcI	CTRYAG	2 cut(s)	483, 575
SinI	GGWCC	1 cut(s)	560
SmlI	CTYRAG	1 cut(s)	881
SmoI	CTYRAG	1 cut(s)	881
Sse9I	AATT	1 cut(s)	608
SsiI	CCGC	3 cut(s)	328, 455, 614
SspMI	CTAG	2 cut(s)	171, 843
TaaI	ACNGT	3 cut(s)	384, 484, 560
TaiI	ACGT	3 cut(s)	520, 529, 796
TaqI	TCGA	3 cut(s)	63, 176, 606
TasI	AATT	1 cut(s)	608
TatI	WGTACW	2 cut(s)	260, 651
TauI	GCSGC	1 cut(s)	616
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	3 cut(s)	303, 752, 904
Tru9I	TTAA	3 cut(s)	303, 752, 904
TseFI	GTSAC	3 cut(s)	191, 209, 781
TseI	GCWGC	2 cut(s)	125, 577
Tsp45I	GTSAC	3 cut(s)	191, 209, 781
TspDTI	ATGAA	2 cut(s)	260, 395
TspGWI	ACGGA	3 cut(s)	296, 363, 453
VpaK11BI	GGWCC	1 cut(s)	560
XceI	RCATGY	2 cut(s)	249, 631
XspI	CTAG	2 cut(s)	171, 843
ZrmI	AGTACT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.