Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0007480

Physical Location & Seq

Genomic Coordinates Forward (+)

15357387 .. 15363035

Gene Structure 5649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00175870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGCAAAATGGGCTGAATTTATTCAAGAGTATACTTTTGTGCTTGAAGCATAAGTCCGGAGTGGAGAATAAAGTAGCAGATGCTCTTAGCCGCGAGAACTCACTTTTACACATTATGAGTGTGGAAGTGGCTGGATTCGATAATCCGAAAGAAGAGTATTTGAGTTGTCCGTACTTTGGAAGAATATATTCAGCTCTCATGGAAAAGCAGTCCAAAAGCACCGAGTTTGTTCTACAAGATGGGTTTCTTTTCAAAGGAACCAAACTTTGTATTCCTTGCACATCGGTGAGAGACTTCCCTAATTTTAGAGCTACATGCGGTGGGATCGCTGGACATTTTGGGGAGAGACAAAACCATTGCTCTTGTGGAGGATCGCTTTCTATTGGCCTAGTCTCAAACGTGATGTTGCTAAAGTTGTTGAACGATGCCGTACTTGTCGGTTGGCAAAGCACAAAAGGCAAAACACGGGGTTATACACCCCGCGCCCGTCTCACATACTCCTTGGCAAGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

171

Amino Acids

18.92

Weight (kDa)

9.23

Isoelectric Point (pI)

31.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007480)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20082 FvH4_1g29103 FvH4_1g29431 FvH4_1g29732 FvH4_1g29761 FvH4_2g03391 FvH4_2g05501 FvH4_2g12792 FvH4_2g19253 FvH4_3g31261 FvH4_4g12741 FvH4_4g33447 FvH4_5g39021 FvH4_6g15231 FvH4_6g15232 FvH4_7g32351
malus_domestica	MD07G1221100.v1.1
prunus_persica	Prupe.8G084500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097291 RchiOBHm_Chr3g0497281 RchiOBHm_Chr5g0015161 RchiOBHm_Chr7g0243211 RchiOBHm_Chr7g0243231
rosa_roxburghii	Rroxscaffold_7G00175870
rosa_wichuraiana	Rw4G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	31
AccII	CGCG	2 cut(s)	93, 483
AccIII	TCCGGA	1 cut(s)	56
AciI	CCGC	3 cut(s)	91, 318, 481
AclWI	GGATC	2 cut(s)	332, 379
AcsI	RAATTY	1 cut(s)	16
AfaI	GTAC	2 cut(s)	173, 432
AfiI	CCNNNNNNNGG	1 cut(s)	176
AgsI	TTSAA	4 cut(s)	25, 46, 253, 421
AleI	CACNNNNGTG	1 cut(s)	284
AluBI	AGCT	2 cut(s)	194, 311
AluI	AGCT	2 cut(s)	194, 311
Alw26I	GTCTC	4 cut(s)	285, 340, 397, 494
AlwI	GGATC	2 cut(s)	332, 379
Aor13HI	TCCGGA	1 cut(s)	56
AoxI	GGCC	1 cut(s)	385
ApoI	RAATTY	1 cut(s)	16
Asp700I	GAANNNNTTC	2 cut(s)	20, 187
AspLEI	GCGC	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	298
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	413
BcoDI	GTCTC	4 cut(s)	285, 340, 397, 494
BfaI	CTAG	1 cut(s)	389
BisI	GCNGC	1 cut(s)	91
BlsI	GCNGC	1 cut(s)	92
BmiI	GGNNCC	1 cut(s)	259
BmsI	GCATC	2 cut(s)	70, 415
BsaJI	CCNNGG	1 cut(s)	501
BsaWI	WCCGGW	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	355
BseAI	TCCGGA	1 cut(s)	56
BseDI	CCNNGG	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	176
BseMI	GCAATG	1 cut(s)	355
Bsh1236I	CGCG	2 cut(s)	93, 483
BshFI	GGCC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	176
BsmAI	GTCTC	4 cut(s)	285, 340, 397, 494
BsmBI	CGTCTC	1 cut(s)	494
BsnI	GGCC	1 cut(s)	387
Bsp13I	TCCGGA	1 cut(s)	56
Bsp143I	GATC	2 cut(s)	324, 371
BspACI	CCGC	3 cut(s)	91, 318, 481
BspANI	GGCC	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	56
BspFNI	CGCG	2 cut(s)	93, 483
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	2 cut(s)	332, 379
BsrDI	GCAATG	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	501
BssMI	GATC	2 cut(s)	324, 371
BssNAI	GTATAC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	501
Bst1107I	GTATAC	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	86
BstFNI	CGCG	2 cut(s)	93, 483
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	2 cut(s)	327, 374
BstMAI	GTCTC	4 cut(s)	285, 340, 397, 494
BstMBI	GATC	2 cut(s)	324, 371
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 456
BstNSI	RCATGY	1 cut(s)	318
BstUI	CGCG	2 cut(s)	93, 483
BstZ17I	GTATAC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	387
CfoI	GCGC	1 cut(s)	485
Csp6I	GTAC	2 cut(s)	172, 431
CviAII	CATG	2 cut(s)	199, 315
CviJI	RGCY	6 cut(s)	13, 90, 131, 194, 311, 387
CviKI_1	RGCY	6 cut(s)	13, 90, 131, 194, 311, 387
CviQI	GTAC	2 cut(s)	172, 431
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	2 cut(s)	326, 373
DpnII	GATC	2 cut(s)	324, 371
Eam1104I	CTCTTC	1 cut(s)	147
EarI	CTCTTC	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	501
Esp3I	CGTCTC	1 cut(s)	494
FaeI	CATG	2 cut(s)	202, 318
FaiI	YATR	8 cut(s)	32, 51, 116, 187, 200, 316, 474, 496
FatI	CATG	2 cut(s)	198, 314
FauI	CCCGC	1 cut(s)	488
FblI	GTMKAC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	91
FspBI	CTAG	1 cut(s)	389
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	1 cut(s)	91
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	1 cut(s)	57
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	2 cut(s)	202, 318
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	147
Hpy188III	TCNNGA	2 cut(s)	25, 57
Hpy8I	GTNNAC	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	399
HpyCH4V	TGCA	2 cut(s)	4, 279
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 456
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	399
Hsp92II	CATG	2 cut(s)	202, 318
HspAI	GCGC	1 cut(s)	483
Kpn2I	TCCGGA	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	324, 371
LpnPI	CCDG	3 cut(s)	70, 117, 315
LweI	GCATC	2 cut(s)	70, 415
MaeI	CTAG	1 cut(s)	389
MaeII	ACGT	1 cut(s)	399
MalI	GATC	2 cut(s)	326, 373
MboI	GATC	2 cut(s)	324, 371
MboII	GAAGA	2 cut(s)	164, 192
MluCI	AATT	2 cut(s)	16, 301
MnlI	CCTC	1 cut(s)	362
MroI	TCCGGA	1 cut(s)	56
MroXI	GAANNNNTTC	2 cut(s)	20, 187
MslI	CAYNNNNRTG	1 cut(s)	284
MspI	CCGG	1 cut(s)	57
MvnI	CGCG	2 cut(s)	93, 483
MwoI	GCNNNNNNNGC	2 cut(s)	10, 456
NdeII	GATC	2 cut(s)	324, 371
NlaIII	CATG	2 cut(s)	202, 318
NlaIV	GGNNCC	1 cut(s)	259
NspI	RCATGY	1 cut(s)	318
OliI	CACNNNNGTG	1 cut(s)	284
PdmI	GAANNNNTTC	2 cut(s)	20, 187
PfeI	GAWTC	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	259
RsaI	GTAC	2 cut(s)	173, 432
RsaNI	GTAC	2 cut(s)	172, 431
RseI	CAYNNNNRTG	1 cut(s)	284
SatI	GCNGC	1 cut(s)	91
Sau3AI	GATC	2 cut(s)	324, 371
SetI	ASST	3 cut(s)	196, 313, 402
SfaNI	GCATC	2 cut(s)	70, 415
SmiMI	CAYNNNNRTG	1 cut(s)	284
Sse9I	AATT	2 cut(s)	16, 301
SsiI	CCGC	3 cut(s)	91, 318, 481
SspMI	CTAG	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	501
TaiI	ACGT	1 cut(s)	402
TaqI	TCGA	1 cut(s)	138
TasI	AATT	2 cut(s)	16, 301
TauI	GCSGC	1 cut(s)	93
TfiI	GAWTC	1 cut(s)	135
TspGWI	ACGGA	1 cut(s)	159
XapI	RAATTY	1 cut(s)	16
XceI	RCATGY	1 cut(s)	318
XcmI	CCANNNNNNNNNTGG	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	20, 187
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.