Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007480

Physical Location & Seq

Genomic Coordinates Reverse (-)

23272146 .. 23273293

Gene Structure 1148 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32351.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGACTGATTGCTTGAAATCTAGTGTATTTAAGTGGACAGATGCAGCTGAGAGTAGTTTTCAGGCGGTGAAAAAAGCTATGACAGAAGCTCCCATTTTGACCCTACCAGACTATGAGAAAGTCTTTGAAGTTGATTGTGATGCATCCCGAATCGGGATTGGGGCTGTTCTGAGCCAAGAGGGTAAGCCGGTAGCCTTTTATAGTGAAAAGCTCAATGATACGAGGAGAAAGTACTCCACTTATGATGTGGAATTTTATGCCATCATGCAAGCTTTGCGAGAGTGGAAACAGTACTTGATATACAAAGAACTTATCCTTTACTCGGATCATGAAGCATTGAAATTTATCAATGGGCAACAAAAGCTTAACCGGCGTCATGCGAAGTGGGTAGAAGAGCTTCAGGAATACAACTTTGTTATCCGTCACAAAGCCGGAGTACAAAACAGAGTGGCAGACGCATTAAGTCGACGACATGTTTTATTAACAACAATGGAGATCAAGGTTGTTGGGTTTGAGAGATTACGGGATTTGTACAAAGACGATGTGGATTTTGGACATATATGGACAGAATGTGAGGCTCAACGTCCCTTCCAAGATTTTCATATGAATGATGGGTTTTTATTTAAAGGGAGCAGATTGTGCATTCCTAATTGTTCAATGAGGTTATGGATAATTGAAGAGCAGCATGGTGGTGGTCTTGGGGGGCATTTTGGACGAGACAAAACAATTGCTCTAGTTGGGGAAAAATTTTACTGGCCAAAGTTGAATAGAGATGTGATGAGGTATGTTCAACGGTGTAAAGTGTGTCATGTTGCTAAAGGGCATTCTCAAAACACTGGTATGTATACTCCTCTACCTGAACCGAATGCTCCATGGGAGGATGTGAGTATGGACTTTGTATTGGGACTCCCTCGTACTAAGAATGGTCATGATTCTATACTGGTTGTGGTGGATAGATTTTCAAAGATGGCACATTTTGTGCCATGCTCCAAAACCATGGATGCTAGTCACATTGCAAAACTCTATTTTCGAGAAGTAGTCAAGCTACATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

352

Amino Acids

40.73

Weight (kDa)

8.48

Isoelectric Point (pI)

38.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	12 - 103	6.4e-30	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	37 - 136	2.4e-31	RNase H-like domain found in reverse transcriptase
Integrase_H2C2	PF17921	218 - 273	1.9e-17	Integrase zinc binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007480)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20082 FvH4_1g29103 FvH4_1g29431 FvH4_1g29732 FvH4_1g29761 FvH4_2g03391 FvH4_2g05501 FvH4_2g12792 FvH4_2g19253 FvH4_3g31261 FvH4_4g12741 FvH4_4g33447 FvH4_5g39021 FvH4_6g15231 FvH4_6g15232 FvH4_7g32351
malus_domestica	MD07G1221100.v1.1
prunus_persica	Prupe.8G084500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097291 RchiOBHm_Chr3g0497281 RchiOBHm_Chr5g0015161 RchiOBHm_Chr7g0243211 RchiOBHm_Chr7g0243231
rosa_roxburghii	Rroxscaffold_7G00175870
rosa_wichuraiana	Rw4G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	466, 845
AciI	CCGC	1 cut(s)	65
AclWI	GGATC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	755
AcsI	RAATTY	3 cut(s)	251, 341, 746
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	373
AfaI	GTAC	5 cut(s)	233, 293, 438, 533, 916
AfiI	CCNNNNNNNGG	2 cut(s)	153, 322
AflIII	ACRYGT	2 cut(s)	472, 1048
AgsI	TTSAA	8 cut(s)	16, 128, 340, 657, 677, 766, 791, 963
AluBI	AGCT	8 cut(s)	47, 77, 89, 211, 272, 364, 397, 1045
AluI	AGCT	8 cut(s)	47, 77, 89, 211, 272, 364, 397, 1045
Alw26I	GTCTC	1 cut(s)	711
AlwI	GGATC	1 cut(s)	333
AoxI	GGCC	1 cut(s)	755
ApeKI	GCWGC	2 cut(s)	44, 682
ApoI	RAATTY	3 cut(s)	251, 341, 746
Asp700I	GAANNNNTTC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	79
BalI	TGGCCA	1 cut(s)	757
BarI	GAAGNNNNNNTAC	2 cut(s)	381, 413
BbvI	GCAGC	2 cut(s)	56, 694
BccI	CCATC	3 cut(s)	269, 605, 961
BcoDI	GTCTC	1 cut(s)	711
BfaI	CTAG	3 cut(s)	21, 734, 1005
BisI	GCNGC	2 cut(s)	45, 683
BlsI	GCNGC	2 cut(s)	46, 684
BmcAI	AGTACT	2 cut(s)	233, 293
BmsI	GCATC	4 cut(s)	31, 130, 152, 991
BsaHI	GRCGYC	1 cut(s)	373
BsaJI	CCNNGG	2 cut(s)	872, 996
BsaXI	ACNNNNNCTCC	2 cut(s)	73, 103
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 322
Bse118I	RCCGGY	2 cut(s)	187, 369
Bse1I	ACTGG	3 cut(s)	758, 841, 945
Bse3DI	GCAATG	1 cut(s)	1011
BseDI	CCNNGG	2 cut(s)	872, 996
BseGI	GGATG	3 cut(s)	143, 886, 1006
BseLI	CCNNNNNNNGG	2 cut(s)	153, 322
BseMI	GCAATG	1 cut(s)	1011
BseMII	CTCAG	2 cut(s)	39, 161
BseNI	ACTGG	3 cut(s)	758, 841, 945
BseRI	GAGGAG	2 cut(s)	238, 840
BseXI	GCAGC	2 cut(s)	56, 694
BshFI	GGCC	1 cut(s)	757
BsiSI	CCGG	3 cut(s)	188, 370, 432
BslFI	GGGAC	2 cut(s)	570, 918
BslI	CCNNNNNNNGG	2 cut(s)	153, 322
BsmAI	GTCTC	1 cut(s)	711
BsmFI	GGGAC	2 cut(s)	570, 918
BsmI	GAATGC	3 cut(s)	642, 823, 871
BsnI	GGCC	1 cut(s)	757
Bsp1407I	TGTACA	1 cut(s)	531
Bsp143I	GATC	2 cut(s)	325, 495
Bsp19I	CCATGG	2 cut(s)	872, 996
BspACI	CCGC	1 cut(s)	65
BspANI	GGCC	1 cut(s)	757
BspCNI	CTCAG	2 cut(s)	40, 162
BspHI	TCATGA	2 cut(s)	328, 928
BspPI	GGATC	1 cut(s)	333
BspQI	GCTCTTC	2 cut(s)	387, 672
BsrDI	GCAATG	1 cut(s)	1011
BsrFI	RCCGGY	2 cut(s)	187, 369
BsrGI	TGTACA	1 cut(s)	531
BsrI	ACTGG	3 cut(s)	758, 841, 945
BssAI	RCCGGY	2 cut(s)	187, 369
BssECI	CCNNGG	2 cut(s)	872, 996
BssMI	GATC	2 cut(s)	325, 495
BssNAI	GTATAC	1 cut(s)	846
BssNI	GRCGYC	1 cut(s)	373
BssT1I	CCWWGG	2 cut(s)	872, 996
Bst1107I	GTATAC	1 cut(s)	846
Bst4CI	ACNGT	2 cut(s)	291, 795
Bst6I	CTCTTC	2 cut(s)	387, 672
BstACI	GRCGYC	1 cut(s)	373
BstAPI	GCANNNNNTGC	2 cut(s)	274, 639
BstAUI	TGTACA	1 cut(s)	531
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	48, 170, 918
BstDSI	CCRYGG	2 cut(s)	872, 996
BstF5I	GGATG	3 cut(s)	143, 886, 1006
BstKTI	GATC	2 cut(s)	328, 498
BstMAI	GTCTC	1 cut(s)	711
BstMBI	GATC	2 cut(s)	325, 495
BstMWI	GCNNNNNNNGC	4 cut(s)	274, 361, 370, 639
BstNSI	RCATGY	2 cut(s)	476, 1052
BstV1I	GCAGC	2 cut(s)	56, 694
BstXI	CCANNNNNNTGG	1 cut(s)	997
BstZ17I	GTATAC	1 cut(s)	846
BsuRI	GGCC	1 cut(s)	757
BtgI	CCRYGG	2 cut(s)	872, 996
BtsCI	GGATG	3 cut(s)	143, 886, 1006
BtsIMutI	CAGTG	1 cut(s)	834
Cac8I	GCNNGC	1 cut(s)	270
CciI	TCATGA	2 cut(s)	328, 928
Cfr10I	RCCGGY	2 cut(s)	187, 369
CseI	GACGC	2 cut(s)	362, 464
Csp6I	GTAC	5 cut(s)	232, 292, 437, 532, 915
CviQI	GTAC	5 cut(s)	232, 292, 437, 532, 915
DdeI	CTNAG	3 cut(s)	48, 170, 918
DpnI	GATC	2 cut(s)	327, 497
DpnII	GATC	2 cut(s)	325, 495
DraI	TTTAAA	1 cut(s)	625
EaeI	YGGCCR	1 cut(s)	755
Eam1104I	CTCTTC	2 cut(s)	387, 672
EarI	CTCTTC	2 cut(s)	387, 672
Eco130I	CCWWGG	2 cut(s)	872, 996
Eco57I	CTGAAG	1 cut(s)	383
EcoT14I	CCWWGG	2 cut(s)	872, 996
EcoT22I	ATGCAT	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	872, 996
FaqI	GGGAC	2 cut(s)	570, 918
FauNDI	CATATG	1 cut(s)	603
FblI	GTMKAC	2 cut(s)	466, 845
Fnu4HI	GCNGC	2 cut(s)	45, 683
FokI	GGATG	3 cut(s)	130, 893, 1013
Fsp4HI	GCNGC	2 cut(s)	45, 683
FspBI	CTAG	3 cut(s)	21, 734, 1005
GluI	GCNGC	2 cut(s)	45, 683
HaeIII	GGCC	1 cut(s)	757
HapII	CCGG	3 cut(s)	188, 370, 432
HgaI	GACGC	2 cut(s)	362, 464
Hin1I	GRCGYC	1 cut(s)	373
HincII	GTYRAC	1 cut(s)	467
HindII	GTYRAC	1 cut(s)	467
HindIII	AAGCTT	2 cut(s)	270, 362
HinfI	GANTC	3 cut(s)	150, 906, 932
HpaII	CCGG	3 cut(s)	188, 370, 432
HphI	GGTGA	1 cut(s)	79
Hpy166II	GTNNAC	3 cut(s)	36, 467, 846
Hpy188I	TCNGA	2 cut(s)	171, 325
Hpy188III	TCNNGA	6 cut(s)	147, 154, 329, 401, 929, 1031
Hpy8I	GTNNAC	3 cut(s)	36, 467, 846
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	1 cut(s)	598
HpyCH4III	ACNGT	2 cut(s)	291, 795
HpyCH4IV	ACGT	1 cut(s)	583
HpyCH4V	TGCA	5 cut(s)	44, 143, 268, 642, 1016
HpyF10VI	GCNNNNNNNGC	4 cut(s)	274, 361, 370, 639
HpyF3I	CTNAG	3 cut(s)	48, 170, 918
HpySE526I	ACGT	1 cut(s)	583
Hsp92I	GRCGYC	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	325, 495
LguI	GCTCTTC	2 cut(s)	387, 672
LmnI	GCTCC	4 cut(s)	94, 630, 874, 992
Lsp1109I	GCAGC	2 cut(s)	56, 694
LweI	GCATC	4 cut(s)	31, 130, 152, 991
MaeI	CTAG	3 cut(s)	21, 734, 1005
MaeII	ACGT	1 cut(s)	583
MaeIII	GTNAC	2 cut(s)	422, 1007
MalI	GATC	2 cut(s)	327, 497
MboI	GATC	2 cut(s)	325, 495
MboII	GAAGA	2 cut(s)	404, 689
MfeI	CAATTG	1 cut(s)	726
MlsI	TGGCCA	1 cut(s)	757
MluCI	AATT	6 cut(s)	251, 341, 649, 672, 726, 746
MluNI	TGGCCA	1 cut(s)	757
MlyI	GAGTC	1 cut(s)	900
MnlI	CCTC	8 cut(s)	172, 216, 568, 654, 774, 861, 871, 921
Mox20I	TGGCCA	1 cut(s)	757
Mph1103I	ATGCAT	1 cut(s)	145
MroXI	GAANNNNTTC	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	757
MseI	TTAA	5 cut(s)	30, 366, 461, 482, 624
MslI	CAYNNNNRTG	3 cut(s)	606, 690, 839
Msp20I	TGGCCA	1 cut(s)	757
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	3 cut(s)	188, 370, 432
MunI	CAATTG	1 cut(s)	726
Mva1269I	GAATGC	3 cut(s)	642, 823, 871
MwoI	GCNNNNNNNGC	4 cut(s)	274, 361, 370, 639
NcoI	CCATGG	2 cut(s)	872, 996
NdeI	CATATG	1 cut(s)	603
NdeII	GATC	2 cut(s)	325, 495
NmuCI	GTSAC	2 cut(s)	422, 1007
NsiI	ATGCAT	1 cut(s)	145
NspI	RCATGY	2 cut(s)	476, 1052
PagI	TCATGA	2 cut(s)	328, 928
PciI	ACATGT	2 cut(s)	472, 1048
PciSI	GCTCTTC	2 cut(s)	387, 672
PctI	GAATGC	3 cut(s)	642, 823, 871
PdmI	GAANNNNTTC	1 cut(s)	396
PfeI	GAWTC	2 cut(s)	150, 932
PkrI	GCNGC	2 cut(s)	46, 684
PleI	GAGTC	1 cut(s)	900
PpsI	GAGTC	1 cut(s)	900
PscI	ACATGT	2 cut(s)	472, 1048
PvuII	CAGCTG	1 cut(s)	47
RsaI	GTAC	5 cut(s)	233, 293, 438, 533, 916
RsaNI	GTAC	5 cut(s)	232, 292, 437, 532, 915
RseI	CAYNNNNRTG	3 cut(s)	606, 690, 839
SalI	GTCGAC	1 cut(s)	465
SapI	GCTCTTC	2 cut(s)	387, 672
SaqAI	TTAA	5 cut(s)	30, 366, 461, 482, 624
SatI	GCNGC	2 cut(s)	45, 683
Sau3AI	GATC	2 cut(s)	325, 495
ScaI	AGTACT	2 cut(s)	233, 293
SchI	GAGTC	1 cut(s)	900
SfaNI	GCATC	4 cut(s)	31, 130, 152, 991
SmiMI	CAYNNNNRTG	3 cut(s)	606, 690, 839
Sse9I	AATT	6 cut(s)	251, 341, 649, 672, 726, 746
SsiI	CCGC	1 cut(s)	65
SspMI	CTAG	3 cut(s)	21, 734, 1005
StyI	CCWWGG	2 cut(s)	872, 996
TaaI	ACNGT	2 cut(s)	291, 795
TaiI	ACGT	1 cut(s)	586
TaqI	TCGA	2 cut(s)	466, 1030
TasI	AATT	6 cut(s)	251, 341, 649, 672, 726, 746
TatI	WGTACW	4 cut(s)	231, 291, 436, 531
TfiI	GAWTC	2 cut(s)	150, 932
Tru1I	TTAA	5 cut(s)	30, 366, 461, 482, 624
Tru9I	TTAA	5 cut(s)	30, 366, 461, 482, 624
TscAI	CASTG	1 cut(s)	841
TseFI	GTSAC	2 cut(s)	422, 1007
TseI	GCWGC	2 cut(s)	44, 682
Tsp45I	GTSAC	2 cut(s)	422, 1007
TspDTI	ATGAA	3 cut(s)	345, 590, 620
TspGWI	ACGGA	1 cut(s)	410
TspRI	CASTG	1 cut(s)	841
XapI	RAATTY	3 cut(s)	251, 341, 746
XceI	RCATGY	2 cut(s)	476, 1052
XcmI	CCANNNNNNNNNTGG	1 cut(s)	244
XmiI	GTMKAC	2 cut(s)	466, 845
XmnI	GAANNNNTTC	1 cut(s)	396
XspI	CTAG	3 cut(s)	21, 734, 1005
ZrmI	AGTACT	2 cut(s)	233, 293
Zsp2I	ATGCAT	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.