FvH4_4g12741

zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007480
Physical Location & Seq
Reverse (-)
16380184 .. 16382649
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12741.t1

Sequence Viewer

Length: 2466 bp
ATGTGTGTGGACAGCCGTGCAATCAACAAGATCACAATAAAATATCGATTTCCGATTCCTCGACTTGAAGATATGTTGGATGTCCTAGGTGGCTCAGTAGTATTCTCTAAAATTGATCTGAGAAGTGGATATAATCAAATTCGAATCAAACCAGGAGATGAATGGAAGACGGCATTCAAAAGCAAAGATGGGCTCTACGAATGGTTAGTCATGCCGTTTGGATTATCTAATGCACCTAGTACTTTCATGAGAGTGATGAATCAAGTCCTGAAGCCTTATATTGGAACGTGTGTGGTAGTATACTTTGACGACATACTAATCTACAGCAAGAGCAAGGAAGAACACTTGCAACATCTGTGTAAAATTCTTGAAGTTCTCCAAGAAAATAAGTTGTACGTGAACTTGAAGAAGTGCAGTTTCATGACCAAGAAGCTTATGTTTTTGGGTTATGTGGTTAGCTCAGAAGGTATACATGTTGACCAAGACAAGGTGAAAGCAATTCAGGAATGGCCTACACCTAAACCAGTTGGTGACGTACGAAGTTTTCATGGATTGGCAACCTTCTATCGCCGCTTTGTGCCAAATTTCAGTGCTATCACTGCACCAATAACCGAATGTCTGAAGAAAGGCAGATTTCAATGGGGTGAAGAACATGAAAAGAGTTTTGCCATGATTAAGTACAAGTTAAGCACAACACCGGTACTAGCTCTGCCTGATTTTGACAAGATTTTTGAGGTAGAAACTGATGCTTGTGGGGTAGGAATAGGGGCTGTCTTATCTCAAGAAAGGAAGCCAGTGGCGTATTTTAGTGAGAAGCTTAATGAAGCTAGGCAAAAGTGGAGTACATACGACCAAGAGTTCTATGCAGTTGTTCGGGCCTTGAAACAGTGGGAACATTATCTTGTGCAGAGGGAATTTATGCTATACACCGACCATCAAGCCTTGAAATACATCAACAGTCAAAGAAGTGTGAACAAAATGCATATCCGGTGGGTTACTTTCCTACAAAAGTTCCCTTTTGCGATCAAGCACAAGTCTGGAACACTTAACCGTGTTGCAGATGCGTTAAGTCGAAGAAGCCAACTATTGGTGACACTTTCTCAAGAGGTTATTGGGTTTGAATTTTTGAAAGAGCTTTATGAGGAAGATGAAGACTTCAAAGAAATTTGGGCCAAGTGTGTGAAGCAAGAACCCTGCAACGACTTCTTCATCAAAGAAGGGTATCTTTTTCAAGGAAACAGAATATGCATACCAAGGTCTTCACTTAGAGAGATGTTGATTCGAGAATTACATGGAGGAGGCTTAAGTGGACATCTAGGCAGGGATAAAACTATAGCGAGTCTGGAGGAGAGATATTATTGGCCTCAGCTGAAACGAGAAGTGGGAAACATCGTCCGTAAGTGTTACATCTGCCAATCTTCTAAGGGACGATCTGAAAATACAGGACTCTATATGCCTCTGCTAGTACCTAAGGGAATTTGGGAAGACCTCACCATGGACTTCATATTAGGGTTACCTCGGACACAGCGAGGAGTTGACTCTATATTTGTGGTGGTGGATAGGTTTTCAAAGATGGCACACTTCATACCATGTAAGAAGTCATCTGACGCTTCTCACATTGCAAGATTGTTCTTTAAAGAAGTGGTCCGTCTGCATGGAGTGCCTCAGTCTATTACTTCTGATCGAGACACCAAGTTTCTAAGCCACTTTTGGATTACTTTGTGGAAGATATTTGGGACTACGCTCAACCGAAGCAGTACCGCTCATCCACAAACCGATGGACAGACCGAAGTTACTAATAGAACATTGGGGAATATGATTCGGAGTACTTGTGGAGACAAGCCAAAGCAGTGGGATGTTGTTCTGCCTCAGGTTGAGTTTGCCTATAACGGTTCAGTTCACAGCTCTATTGGAAGGACACCATTTTCAATGGTGTATGTTTCACCTCCTAAGCTTGTGGTTGACTTGGCTACTGTTCCAAAGGCTAAGGACTTTAGTGAAGCAGCTGTGTCAATGGCAAGAGAGGTACAGGGAGTCCAAGATGAGGTTAAGCAGAAACTGAAAGTTACTAATGTGAAGTACAAGGCTATTGCAGATTCTCATCGGCGTGAGAAGATTTTTAGCGAAGAAGACACTGTGATGATTTTCTTACGAAAAGAAAGGTTTCCTATCGGTACCTACAACAAGCTCAAGCCCAGGAAGTATGGACCGTACAAAATTATCCAGAAAATCAATGACAATGCATATGTCATTGATCTGCCAGATACTATCGGAATATCCAAGACCTTCAACGTTAGTGACATACATGCCTATCAAGCTGATGATGATGACGCTTTCTATCCTGACATAAACTCGAGGTCGAGTTCTTCTAAAGTGGAGGAGACTGATATAGAACAGCTTGCACAAACATTTAAGACACAGCTTGCTAGGAAGGCAAAGAAAACAAAGTCAAAGCAGCAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

822

Amino Acids

94.64

Weight (kDa)

9.24

Isoelectric Point (pI)

38.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 2 - 151 6.8e-38 Reverse transcriptase (RNA-dependent DNA polymerase)
RT_RNaseH_2 PF17919 214 - 307 1.1e-30 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 239 - 338 1.6e-33 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 420 - 476 1.9e-17 Integrase zinc binding domain
zf-H2C2 PF09337 438 - 472 2.4e-07 H2C2 zinc finger
rve PF00665 498 - 590 1.6e-06 Integrase core domain
SH3_Tf2-1 PF24626 711 - 771 2.4e-18 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 2174
AccB1I GGYRCC 1 cut(s) 2174
AccB7I CCANNNNNTGG 1 cut(s) 1087
AccBSI CCGCTC 1 cut(s) 1763
AccI GTMKAC 2 cut(s) 300, 469
AciI CCGC 2 cut(s) 571, 1761
AclI AACGTT 1 cut(s) 2292
AcsI RAATTY 7 cut(s) 138, 363, 583, 914, 1121, 1164, 1476
AcuI CTGAAG 2 cut(s) 290, 641
AfiI CCNNNNNNNGG 5 cut(s) 281, 487, 1087, 1495, 2044
AflII CTTAAG 1 cut(s) 1303
AflIII ACRYGT 2 cut(s) 287, 472
AgeI ACCGGT 1 cut(s) 697
AjnI CCWGG 2 cut(s) 151, 2195
Alw26I GTCTC 3 cut(s) 1680, 1830, 2375
AlwNI CAGNNNCTG 1 cut(s) 2059
Ama87I CYCGRG 1 cut(s) 2353
AoxI GGCC 4 cut(s) 509, 876, 1170, 1361
ApeKI GCWGC 3 cut(s) 2003, 2455, 2458
ApoI RAATTY 7 cut(s) 138, 363, 583, 914, 1121, 1164, 1476
ArsI GACNNNNNNTTYG 6 cut(s) 192, 224, 713, 745, 1529, 1561
AsiGI ACCGGT 1 cut(s) 697
Asp700I GAANNNNTTC 1 cut(s) 2163
Asp718I GGTACC 1 cut(s) 2174
AspA2I CCTAGG 1 cut(s) 85
AspS9I GGNCC 4 cut(s) 876, 1170, 1645, 2207
AsuHPI GGTGA 6 cut(s) 502, 542, 656, 1102, 1483, 1935
AsuII TTCGAA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 2353
AvaII GGWCC 2 cut(s) 1645, 2207
AvrII CCTAGG 1 cut(s) 85
AxyI CCTNAGG 2 cut(s) 1470, 1869
BanI GGYRCC 1 cut(s) 2174
BanII GRGCYC 1 cut(s) 195
BbsI GAAGAC 5 cut(s) 173, 1158, 1251, 1491, 2136
BbvCI CCTCAGC 1 cut(s) 1365
BbvI GCAGC 1 cut(s) 2015
BccI CCATC 4 cut(s) 182, 942, 1567, 1772
BceAI ACGGC 2 cut(s) 186, 199
BciT130I CCWGG 2 cut(s) 153, 2197
BcoDI GTCTC 3 cut(s) 1680, 1830, 2375
BfaI CTAG 7 cut(s) 86, 237, 704, 828, 1316, 1463, 2427
BfmI CTRYAG 2 cut(s) 322, 1332
BfrI CTTAAG 1 cut(s) 1303
BisI GCNGC 4 cut(s) 571, 2004, 2456, 2459
BlnI CCTAGG 1 cut(s) 85
BlsI GCNGC 4 cut(s) 572, 2005, 2457, 2460
BmcAI AGTACT 2 cut(s) 241, 1828
Bme1390I CCNGG 2 cut(s) 153, 2197
Bme18I GGWCC 2 cut(s) 1645, 2207
BmeT110I CYCGRG 1 cut(s) 2353
BmgT120I GGNCC 4 cut(s) 876, 1170, 1645, 2207
BmiI GGNNCC 1 cut(s) 2176
BmrFI CCNGG 2 cut(s) 153, 2197
BmsI GCATC 2 cut(s) 736, 1051
BpiI GAAGAC 5 cut(s) 173, 1158, 1251, 1491, 2136
BpmI CTGGAG 1 cut(s) 1364
Bpu10I CCTNAGC 3 cut(s) 1365, 1950, 1986
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 3 cut(s) 765, 1086, 2174
Bsa29I ATCGAT 1 cut(s) 46
BsaAI YACGTR 1 cut(s) 397
BsaBI GATNNNNATC 1 cut(s) 2100
BsaJI CCNNGG 5 cut(s) 85, 1253, 1494, 1517, 2195
BsaWI WCCGGW 2 cut(s) 697, 987
BsaXI ACNNNNNCTCC 2 cut(s) 1816, 1846
Bsc4I CCNNNNNNNGG 5 cut(s) 281, 487, 1087, 1495, 2044
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 2 cut(s) 524, 794
Bse21I CCTNAGG 2 cut(s) 1470, 1869
Bse3DI GCAATG 1 cut(s) 1617
Bse8I GATNNNNATC 1 cut(s) 2100
BseBI CCWGG 2 cut(s) 153, 2197
BseCI ATCGAT 1 cut(s) 46
BseDI CCNNGG 5 cut(s) 85, 1253, 1494, 1517, 2195
BseGI GGATG 3 cut(s) 85, 1765, 1861
BseJI GATNNNNATC 1 cut(s) 2100
BseLI CCNNNNNNNGG 5 cut(s) 281, 487, 1087, 1495, 2044
BseMI GCAATG 1 cut(s) 1617
BseMII CTCAG 6 cut(s) 108, 110, 474, 1379, 1679, 1883
BseNI ACTGG 2 cut(s) 524, 794
BseRI GAGGAG 4 cut(s) 1311, 1361, 1545, 2393
BseXI GCAGC 1 cut(s) 2015
BsgI GTGCAG 3 cut(s) 433, 585, 926
BshFI GGCC 4 cut(s) 511, 878, 1172, 1363
BshNI GGYRCC 1 cut(s) 2174
BshTI ACCGGT 1 cut(s) 697
BshVI ATCGAT 1 cut(s) 46
BsiHKCI CYCGRG 1 cut(s) 2353
BsiSI CCGG 2 cut(s) 698, 988
BsiWI CGTACG 1 cut(s) 535
BslFI GGGAC 2 cut(s) 1440, 1750
BslI CCNNNNNNNGG 5 cut(s) 281, 487, 1087, 1495, 2044
BsmAI GTCTC 3 cut(s) 1680, 1830, 2375
BsmFI GGGAC 2 cut(s) 1440, 1750
BsmI GAATGC 1 cut(s) 173
BsnI GGCC 4 cut(s) 511, 878, 1172, 1363
BsoBI CYCGRG 1 cut(s) 2353
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 195
Bsp143I GATC 6 cut(s) 30, 115, 1023, 1430, 1681, 2254
Bsp19I CCATGG 1 cut(s) 1494
BspACI CCGC 2 cut(s) 571, 1761
BspANI GGCC 4 cut(s) 511, 878, 1172, 1363
BspCNI CTCAG 6 cut(s) 107, 111, 473, 1378, 1678, 1882
BspDI ATCGAT 1 cut(s) 46
BspHI TCATGA 2 cut(s) 246, 420
BspLI GGNNCC 1 cut(s) 2176
BspT104I TTCGAA 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 2174
BspTI CTTAAG 1 cut(s) 1303
BsrBI CCGCTC 1 cut(s) 1763
BsrDI GCAATG 1 cut(s) 1617
BsrFI RCCGGY 1 cut(s) 697
BsrI ACTGG 2 cut(s) 524, 794
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 5 cut(s) 85, 1253, 1494, 1517, 2195
BssMI GATC 6 cut(s) 30, 115, 1023, 1430, 1681, 2254
BssNAI GTATAC 2 cut(s) 301, 470
BssT1I CCWWGG 3 cut(s) 85, 1253, 1494
Bst1107I GTATAC 2 cut(s) 301, 470
Bst2UI CCWGG 2 cut(s) 153, 2197
Bst4CI ACNGT 7 cut(s) 888, 959, 1052, 1892, 1975, 2137, 2211
BstAFI CTTAAG 1 cut(s) 1303
BstAPI GCANNNNNTGC 1 cut(s) 1660
BstBAI YACGTR 1 cut(s) 397
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 2400, 2424
BstDSI CCRYGG 1 cut(s) 1494
BstEII GGTNACC 1 cut(s) 1512
BstF5I GGATG 3 cut(s) 85, 1765, 1861
BstKTI GATC 6 cut(s) 33, 118, 1026, 1433, 1684, 2257
BstMAI GTCTC 3 cut(s) 1680, 1830, 2375
BstMBI GATC 6 cut(s) 30, 115, 1023, 1430, 1681, 2254
BstMWI GCNNNNNNNGC 4 cut(s) 599, 1660, 2315, 2432
BstNI CCWGG 2 cut(s) 153, 2197
BstNSI RCATGY 2 cut(s) 476, 2309
BstPI GGTNACC 1 cut(s) 1512
BstSCI CCNGG 2 cut(s) 151, 2195
BstSFI CTRYAG 2 cut(s) 322, 1332
BstV1I GCAGC 1 cut(s) 2015
BstV2I GAAGAC 5 cut(s) 173, 1158, 1251, 1491, 2136
BstXI CCANNNNNNTGG 1 cut(s) 1851
BstZ17I GTATAC 2 cut(s) 301, 470
Bsu15I ATCGAT 1 cut(s) 46
Bsu36I CCTNAGG 2 cut(s) 1470, 1869
BsuRI GGCC 4 cut(s) 511, 878, 1172, 1363
BsuTUI ATCGAT 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 1494
BtsCI GGATG 3 cut(s) 85, 1765, 1861
BtsI GCAGTG 2 cut(s) 597, 1856
BtsIMutI CAGTG 6 cut(s) 595, 597, 801, 893, 1856, 2133
Cac8I GCNNGC 2 cut(s) 2400, 2424
CaiI CAGNNNCTG 1 cut(s) 2059
CciI TCATGA 2 cut(s) 246, 420
Cfr10I RCCGGY 1 cut(s) 697
Cfr13I GGNCC 4 cut(s) 876, 1170, 1645, 2207
ClaI ATCGAT 1 cut(s) 46
CseI GACGC 2 cut(s) 1616, 2339
CspAI ACCGGT 1 cut(s) 697
DpnI GATC 6 cut(s) 32, 117, 1025, 1432, 1683, 2256
DpnII GATC 6 cut(s) 30, 115, 1023, 1430, 1681, 2254
DraI TTTAAA 1 cut(s) 1636
Eco130I CCWWGG 3 cut(s) 85, 1253, 1494
Eco24I GRGCYC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 1645, 2207
Eco57I CTGAAG 2 cut(s) 290, 641
Eco81I CCTNAGG 2 cut(s) 1470, 1869
Eco88I CYCGRG 1 cut(s) 2353
Eco91I GGTNACC 1 cut(s) 1512
EcoO65I GGTNACC 1 cut(s) 1512
EcoRII CCWGG 2 cut(s) 151, 2195
EcoT14I CCWWGG 3 cut(s) 85, 1253, 1494
EcoT22I ATGCAT 3 cut(s) 984, 1250, 2245
EcoT38I GRGCYC 1 cut(s) 195
ErhI CCWWGG 3 cut(s) 85, 1253, 1494
FalI AAGNNNNNCTT 2 cut(s) 1209, 1241
FaqI GGGAC 2 cut(s) 1440, 1750
FauNDI CATATG 1 cut(s) 2245
FblI GTMKAC 2 cut(s) 300, 469
Fnu4HI GCNGC 4 cut(s) 571, 2004, 2456, 2459
FokI GGATG 3 cut(s) 92, 1752, 1868
FriOI GRGCYC 1 cut(s) 195
Fsp4HI GCNGC 4 cut(s) 571, 2004, 2456, 2459
FspBI CTAG 7 cut(s) 86, 237, 704, 828, 1316, 1463, 2427
GluI GCNGC 4 cut(s) 571, 2004, 2456, 2459
GsuI CTGGAG 1 cut(s) 1364
HaeIII GGCC 4 cut(s) 511, 878, 1172, 1363
HapII CCGG 2 cut(s) 698, 988
HgaI GACGC 2 cut(s) 1616, 2339
HincII GTYRAC 3 cut(s) 478, 1537, 1963
HindII GTYRAC 3 cut(s) 478, 1537, 1963
HindIII AAGCTT 3 cut(s) 431, 815, 1952
HpaII CCGG 2 cut(s) 698, 988
HphI GGTGA 6 cut(s) 502, 542, 656, 1102, 1483, 1935
HpyAV CCTTC 6 cut(s) 458, 571, 1211, 1908, 2296, 2425
HpyCH4III ACNGT 7 cut(s) 888, 959, 1052, 1892, 1975, 2137, 2211
HpyCH4IV ACGT 4 cut(s) 287, 396, 534, 2292
HpyF10VI GCNNNNNNNGC 4 cut(s) 599, 1660, 2315, 2432
HpySE526I ACGT 4 cut(s) 287, 396, 534, 2292
KpnI GGTACC 1 cut(s) 2178
Kzo9I GATC 6 cut(s) 30, 115, 1023, 1430, 1681, 2254
Lsp1109I GCAGC 1 cut(s) 2015
LweI GCATC 2 cut(s) 736, 1051
MaeI CTAG 7 cut(s) 86, 237, 704, 828, 1316, 1463, 2427
MaeII ACGT 4 cut(s) 287, 396, 534, 2292
MaeIII GTNAC 8 cut(s) 530, 994, 1090, 1403, 1512, 1792, 2065, 2297
MalI GATC 6 cut(s) 32, 117, 1025, 1432, 1683, 2256
MbiI CCGCTC 1 cut(s) 1763
MboI GATC 6 cut(s) 30, 115, 1023, 1430, 1681, 2254
MhlI GDGCHC 1 cut(s) 195
MlyI GAGTC 4 cut(s) 1348, 1440, 1532, 2043
MmeI TCCRAC 1 cut(s) 57
Mph1103I ATGCAT 3 cut(s) 984, 1250, 2245
MroXI GAANNNNTTC 1 cut(s) 2163
MseI TTAA 9 cut(s) 675, 686, 819, 1047, 1067, 1304, 1635, 2049, 2412
MslI CAYNNNNRTG 3 cut(s) 251, 2106, 2138
MspA1I CMGCKG 2 cut(s) 1369, 2006
MspCI CTTAAG 1 cut(s) 1303
MspI CCGG 2 cut(s) 698, 988
MspR9I CCNGG 2 cut(s) 153, 2197
Mva1269I GAATGC 1 cut(s) 173
MvaI CCWGG 2 cut(s) 153, 2197
MwoI GCNNNNNNNGC 4 cut(s) 599, 1660, 2315, 2432
NcoI CCATGG 1 cut(s) 1494
NdeI CATATG 1 cut(s) 2245
NdeII GATC 6 cut(s) 30, 115, 1023, 1430, 1681, 2254
NlaIV GGNNCC 1 cut(s) 2176
NmuCI GTSAC 3 cut(s) 530, 1090, 2297
NsiI ATGCAT 3 cut(s) 984, 1250, 2245
NspI RCATGY 2 cut(s) 476, 2309
NspV TTCGAA 1 cut(s) 142
PaeR7I CTCGAG 1 cut(s) 2353
PagI TCATGA 2 cut(s) 246, 420
PciI ACATGT 1 cut(s) 472
PcsI WCGNNNNNNNCGW 1 cut(s) 1525
PctI GAATGC 1 cut(s) 173
PdmI GAANNNNTTC 1 cut(s) 2163
PfeI GAWTC 6 cut(s) 55, 144, 259, 1279, 1819, 2096
Pfl23II CGTACG 1 cut(s) 535
PflMI CCANNNNNTGG 1 cut(s) 1087
PinAI ACCGGT 1 cut(s) 697
PkrI GCNGC 4 cut(s) 572, 2005, 2457, 2460
PleI GAGTC 4 cut(s) 1347, 1440, 1532, 2042
PpsI GAGTC 4 cut(s) 1347, 1440, 1532, 2042
Ppu21I YACGTR 1 cut(s) 397
PscI ACATGT 1 cut(s) 472
Psp1406I AACGTT 1 cut(s) 2292
Psp6I CCWGG 2 cut(s) 151, 2195
PspEI GGTNACC 1 cut(s) 1512
PspGI CCWGG 2 cut(s) 151, 2195
PspLI CGTACG 1 cut(s) 535
PspN4I GGNNCC 1 cut(s) 2176
PspPI GGNCC 4 cut(s) 876, 1170, 1645, 2207
PspXI VCTCGAGB 1 cut(s) 2353
PstNI CAGNNNCTG 1 cut(s) 2059
PvuII CAGCTG 2 cut(s) 1369, 2006
RseI CAYNNNNRTG 3 cut(s) 251, 2106, 2138
SaqAI TTAA 9 cut(s) 675, 686, 819, 1047, 1067, 1304, 1635, 2049, 2412
SatI GCNGC 4 cut(s) 571, 2004, 2456, 2459
Sau3AI GATC 6 cut(s) 30, 115, 1023, 1430, 1681, 2254
Sau96I GGNCC 4 cut(s) 876, 1170, 1645, 2207
ScaI AGTACT 2 cut(s) 241, 1828
SchI GAGTC 4 cut(s) 1348, 1440, 1532, 2043
ScrFI CCNGG 2 cut(s) 153, 2197
SduI GDGCHC 1 cut(s) 195
SfaNI GCATC 2 cut(s) 736, 1051
SfcI CTRYAG 2 cut(s) 322, 1332
Sfr274I CTCGAG 1 cut(s) 2353
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 2 cut(s) 1645, 2207
SlaI CTCGAG 1 cut(s) 2353
SmiMI CAYNNNNRTG 3 cut(s) 251, 2106, 2138
SmlI CTYRAG 5 cut(s) 780, 1101, 1303, 2189, 2353
SmoI CTYRAG 5 cut(s) 780, 1101, 1303, 2189, 2353
SsiI CCGC 2 cut(s) 571, 1761
SspMI CTAG 7 cut(s) 86, 237, 704, 828, 1316, 1463, 2427
StyD4I CCNGG 2 cut(s) 151, 2195
StyI CCWWGG 3 cut(s) 85, 1253, 1494
TaaI ACNGT 7 cut(s) 888, 959, 1052, 1892, 1975, 2137, 2211
TaiI ACGT 4 cut(s) 290, 399, 537, 2295
TaqI TCGA 8 cut(s) 46, 61, 142, 1072, 1282, 1684, 2354, 2360
TaqII GACCGA 1 cut(s) 1802
TatI WGTACW 5 cut(s) 239, 678, 842, 1826, 2079
TauI GCSGC 1 cut(s) 573
TfiI GAWTC 6 cut(s) 55, 144, 259, 1279, 1819, 2096
Tru1I TTAA 9 cut(s) 675, 686, 819, 1047, 1067, 1304, 1635, 2049, 2412
Tru9I TTAA 9 cut(s) 675, 686, 819, 1047, 1067, 1304, 1635, 2049, 2412
TscAI CASTG 6 cut(s) 595, 604, 801, 893, 1856, 2140
TseFI GTSAC 3 cut(s) 530, 1090, 2297
TseI GCWGC 3 cut(s) 2003, 2455, 2458
Tsp45I GTSAC 3 cut(s) 530, 1090, 2297
TspGWI ACGGA 2 cut(s) 1385, 1637
TspRI CASTG 6 cut(s) 595, 604, 801, 893, 1856, 2140
Van91I CCANNNNNTGG 1 cut(s) 1087
Vha464I CTTAAG 1 cut(s) 1303
VpaK11BI GGWCC 2 cut(s) 1645, 2207
XapI RAATTY 7 cut(s) 138, 363, 583, 914, 1121, 1164, 1476
XceI RCATGY 2 cut(s) 476, 2309
XcmI CCANNNNNNNNNTGG 1 cut(s) 159
XhoI CTCGAG 1 cut(s) 2353
XmaJI CCTAGG 1 cut(s) 85
XmiI GTMKAC 2 cut(s) 300, 469
XmnI GAANNNNTTC 1 cut(s) 2163
XspI CTAG 7 cut(s) 86, 237, 704, 828, 1316, 1463, 2427
ZrmI AGTACT 2 cut(s) 241, 1828
Zsp2I ATGCAT 3 cut(s) 984, 1250, 2245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.