DNA RNA polymerases superfamily protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g20082 FvH4_1g29103 FvH4_1g29431 FvH4_1g29732 FvH4_1g29761 FvH4_2g03391 FvH4_2g05501 FvH4_2g12792 FvH4_2g19253 FvH4_3g31261 FvH4_4g12741 FvH4_4g33447 FvH4_5g39021 FvH4_6g15231 FvH4_6g15232 FvH4_7g32351 |
| malus_domestica | MD07G1221100.v1.1 |
| prunus_persica | Prupe.8G084500_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0097291 RchiOBHm_Chr3g0497281 RchiOBHm_Chr5g0015161 RchiOBHm_Chr7g0243211 RchiOBHm_Chr7g0243231 |
| rosa_roxburghii | Rroxscaffold_7G00175870 |
| rosa_wichuraiana | Rw4G015470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 308, 341 |
| AcuI | CTGAAG | 1 cut(s) | 60 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 33 |
| AgsI | TTSAA | 5 cut(s) | 31, 128, 269, 392, 477 |
| AluBI | AGCT | 7 cut(s) | 77, 89, 101, 211, 335, 364, 482 |
| AluI | AGCT | 7 cut(s) | 77, 89, 101, 211, 335, 364, 482 |
| Alw21I | GWGCWC | 1 cut(s) | 472 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| AoxI | GGCC | 2 cut(s) | 45, 373 |
| ApeKI | GCWGC | 1 cut(s) | 482 |
| ApoI | RAATTY | 2 cut(s) | 308, 341 |
| ArsI | GACNNNNNNTTYG | 5 cut(s) | 27, 78, 107, 110, 139 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 312 |
| AspLEI | GCGC | 1 cut(s) | 18 |
| Bbv12I | GWGCWC | 1 cut(s) | 472 |
| BbvI | GCAGC | 1 cut(s) | 469 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 2 cut(s) | 222, 381 |
| BfmI | CTRYAG | 1 cut(s) | 189 |
| BisI | GCNGC | 1 cut(s) | 483 |
| BlsI | GCNGC | 1 cut(s) | 484 |
| BmsI | GCATC | 3 cut(s) | 130, 426, 445 |
| BsaI | GGTCTC | 1 cut(s) | 280 |
| BsaJI | CCNNGG | 1 cut(s) | 349 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 73, 103 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 33 |
| BseDI | CCNNGG | 1 cut(s) | 349 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 33 |
| BseMII | CTCAG | 2 cut(s) | 423, 452 |
| BseXI | GCAGC | 1 cut(s) | 469 |
| BshFI | GGCC | 2 cut(s) | 47, 375 |
| BsiHKAI | GWGCWC | 1 cut(s) | 472 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 33 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsnI | GGCC | 2 cut(s) | 47, 375 |
| Bso31I | GGTCTC | 1 cut(s) | 280 |
| Bsp1286I | GDGCHC | 1 cut(s) | 472 |
| Bsp19I | CCATGG | 1 cut(s) | 349 |
| BspANI | GGCC | 2 cut(s) | 47, 375 |
| BspCNI | CTCAG | 2 cut(s) | 424, 453 |
| BspTNI | GGTCTC | 1 cut(s) | 280 |
| BssECI | CCNNGG | 1 cut(s) | 349 |
| BssT1I | CCWWGG | 1 cut(s) | 349 |
| Bst6I | CTCTTC | 2 cut(s) | 36, 279 |
| BstDEI | CTNAG | 4 cut(s) | 97, 147, 432, 461 |
| BstDSI | CCRYGG | 1 cut(s) | 349 |
| BstHHI | GCGC | 1 cut(s) | 18 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstSFI | CTRYAG | 1 cut(s) | 189 |
| BstV1I | GCAGC | 1 cut(s) | 469 |
| BsuRI | GGCC | 2 cut(s) | 47, 375 |
| BtgI | CCRYGG | 1 cut(s) | 349 |
| BtgZI | GCGATG | 1 cut(s) | 153 |
| BtsIMutI | CAGTG | 1 cut(s) | 208 |
| CfoI | GCGC | 1 cut(s) | 18 |
| CseI | GACGC | 1 cut(s) | 132 |
| CviAII | CATG | 3 cut(s) | 350, 377, 486 |
| DdeI | CTNAG | 4 cut(s) | 97, 147, 432, 461 |
| Eam1104I | CTCTTC | 2 cut(s) | 36, 279 |
| EarI | CTCTTC | 2 cut(s) | 36, 279 |
| Eco130I | CCWWGG | 1 cut(s) | 349 |
| Eco31I | GGTCTC | 1 cut(s) | 280 |
| Eco57I | CTGAAG | 1 cut(s) | 60 |
| EcoT14I | CCWWGG | 1 cut(s) | 349 |
| ErhI | CCWWGG | 1 cut(s) | 349 |
| FaeI | CATG | 3 cut(s) | 353, 380, 489 |
| FatI | CATG | 3 cut(s) | 349, 376, 485 |
| FauNDI | CATATG | 1 cut(s) | 241 |
| Fnu4HI | GCNGC | 1 cut(s) | 483 |
| Fsp4HI | GCNGC | 1 cut(s) | 483 |
| FspBI | CTAG | 2 cut(s) | 222, 381 |
| GlaI | GCGC | 1 cut(s) | 17 |
| GluI | GCNGC | 1 cut(s) | 483 |
| HaeIII | GGCC | 2 cut(s) | 47, 375 |
| HgaI | GACGC | 1 cut(s) | 132 |
| HhaI | GCGC | 1 cut(s) | 18 |
| Hin1II | CATG | 3 cut(s) | 353, 380, 489 |
| Hin6I | GCGC | 1 cut(s) | 16 |
| HinP1I | GCGC | 1 cut(s) | 16 |
| HindIII | AAGCTT | 1 cut(s) | 362 |
| Hpy188I | TCNGA | 2 cut(s) | 325, 462 |
| HpyAV | CCTTC | 1 cut(s) | 173 |
| HpyCH4V | TGCA | 2 cut(s) | 439, 485 |
| HpyF3I | CTNAG | 4 cut(s) | 97, 147, 432, 461 |
| Hsp92II | CATG | 3 cut(s) | 353, 380, 489 |
| HspAI | GCGC | 1 cut(s) | 16 |
| LmnI | GCTCC | 1 cut(s) | 94 |
| LpnPI | CCDG | 2 cut(s) | 105, 120 |
| Lsp1109I | GCAGC | 1 cut(s) | 469 |
| LweI | GCATC | 3 cut(s) | 130, 426, 445 |
| MaeI | CTAG | 2 cut(s) | 222, 381 |
| MboII | GAAGA | 3 cut(s) | 53, 266, 404 |
| MhlI | GDGCHC | 1 cut(s) | 472 |
| MluCI | AATT | 3 cut(s) | 156, 308, 341 |
| MmeI | TCCRAC | 1 cut(s) | 133 |
| MnlI | CCTC | 3 cut(s) | 37, 356, 365 |
| MroXI | GAANNNNTTC | 1 cut(s) | 312 |
| MseI | TTAA | 1 cut(s) | 366 |
| NcoI | CCATGG | 1 cut(s) | 349 |
| NdeI | CATATG | 1 cut(s) | 241 |
| NlaIII | CATG | 3 cut(s) | 353, 380, 489 |
| PdmI | GAANNNNTTC | 1 cut(s) | 312 |
| PkrI | GCNGC | 1 cut(s) | 484 |
| SaqAI | TTAA | 1 cut(s) | 366 |
| SatI | GCNGC | 1 cut(s) | 483 |
| SduI | GDGCHC | 1 cut(s) | 472 |
| SfaNI | GCATC | 3 cut(s) | 130, 426, 445 |
| SfcI | CTRYAG | 1 cut(s) | 189 |
| Sse9I | AATT | 3 cut(s) | 156, 308, 341 |
| SspMI | CTAG | 2 cut(s) | 222, 381 |
| StyI | CCWWGG | 1 cut(s) | 349 |
| TasI | AATT | 3 cut(s) | 156, 308, 341 |
| Tru1I | TTAA | 1 cut(s) | 366 |
| Tru9I | TTAA | 1 cut(s) | 366 |
| TscAI | CASTG | 1 cut(s) | 208 |
| TseI | GCWGC | 1 cut(s) | 482 |
| TspGWI | ACGGA | 1 cut(s) | 20 |
| TspRI | CASTG | 1 cut(s) | 208 |
| XapI | RAATTY | 2 cut(s) | 308, 341 |
| XmnI | GAANNNNTTC | 1 cut(s) | 312 |
| XspI | CTAG | 2 cut(s) | 222, 381 |