Zinc knuckle
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g20082 FvH4_1g29103 FvH4_1g29431 FvH4_1g29732 FvH4_1g29761 FvH4_2g03391 FvH4_2g05501 FvH4_2g12792 FvH4_2g19253 FvH4_3g31261 FvH4_4g12741 FvH4_4g33447 FvH4_5g39021 FvH4_6g15231 FvH4_6g15232 FvH4_7g32351 |
| malus_domestica | MD07G1221100.v1.1 |
| prunus_persica | Prupe.8G084500_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0097291 RchiOBHm_Chr3g0497281 RchiOBHm_Chr5g0015161 RchiOBHm_Chr7g0243211 RchiOBHm_Chr7g0243231 |
| rosa_roxburghii | Rroxscaffold_7G00175870 |
| rosa_wichuraiana | Rw4G015470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 17 |
| AciI | CCGC | 1 cut(s) | 188 |
| AcsI | RAATTY | 1 cut(s) | 163 |
| AcyI | GRCGYC | 1 cut(s) | 14 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 238 |
| AgsI | TTSAA | 6 cut(s) | 37, 83, 107, 118, 218, 254 |
| AjnI | CCWGG | 3 cut(s) | 70, 88, 220 |
| ApoI | RAATTY | 1 cut(s) | 163 |
| BciT130I | CCWGG | 3 cut(s) | 72, 90, 222 |
| BglII | AGATCT | 1 cut(s) | 127 |
| Bme1390I | CCNGG | 3 cut(s) | 72, 90, 222 |
| BmrFI | CCNGG | 3 cut(s) | 72, 90, 222 |
| BpmI | CTGGAG | 1 cut(s) | 54 |
| BsaHI | GRCGYC | 1 cut(s) | 14 |
| BsaJI | CCNNGG | 3 cut(s) | 88, 89, 232 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 238 |
| BseBI | CCWGG | 3 cut(s) | 72, 90, 222 |
| BseDI | CCNNGG | 3 cut(s) | 88, 89, 232 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 238 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 238 |
| Bsp143I | GATC | 2 cut(s) | 127, 262 |
| BspACI | CCGC | 1 cut(s) | 188 |
| BssECI | CCNNGG | 3 cut(s) | 88, 89, 232 |
| BssMI | GATC | 2 cut(s) | 127, 262 |
| BssNI | GRCGYC | 1 cut(s) | 14 |
| Bst2UI | CCWGG | 3 cut(s) | 72, 90, 222 |
| Bst6I | CTCTTC | 1 cut(s) | 153 |
| BstACI | GRCGYC | 1 cut(s) | 14 |
| BstKTI | GATC | 2 cut(s) | 130, 265 |
| BstMBI | GATC | 2 cut(s) | 127, 262 |
| BstNI | CCWGG | 3 cut(s) | 72, 90, 222 |
| BstSCI | CCNGG | 3 cut(s) | 70, 88, 220 |
| BstX2I | RGATCY | 1 cut(s) | 127 |
| BstYI | RGATCY | 1 cut(s) | 127 |
| BtsIMutI | CAGTG | 1 cut(s) | 201 |
| CviAII | CATG | 2 cut(s) | 25, 149 |
| CviJI | RGCY | 2 cut(s) | 110, 242 |
| CviKI_1 | RGCY | 2 cut(s) | 110, 242 |
| DpnI | GATC | 2 cut(s) | 129, 264 |
| DpnII | GATC | 2 cut(s) | 127, 262 |
| Eam1104I | CTCTTC | 1 cut(s) | 153 |
| EarI | CTCTTC | 1 cut(s) | 153 |
| EcoRII | CCWGG | 3 cut(s) | 70, 88, 220 |
| FaeI | CATG | 2 cut(s) | 28, 152 |
| FaiI | YATR | 6 cut(s) | 26, 42, 139, 144, 150, 156 |
| FatI | CATG | 2 cut(s) | 24, 148 |
| GsuI | CTGGAG | 1 cut(s) | 54 |
| Hin1I | GRCGYC | 1 cut(s) | 14 |
| Hin1II | CATG | 2 cut(s) | 28, 152 |
| Hpy166II | GTNNAC | 1 cut(s) | 179 |
| Hpy188III | TCNNGA | 1 cut(s) | 251 |
| Hpy8I | GTNNAC | 1 cut(s) | 179 |
| Hpy99I | CGWCG | 2 cut(s) | 16, 19 |
| HpyCH4IV | ACGT | 1 cut(s) | 14 |
| HpySE526I | ACGT | 1 cut(s) | 14 |
| Hsp92I | GRCGYC | 1 cut(s) | 14 |
| Hsp92II | CATG | 2 cut(s) | 28, 152 |
| Kzo9I | GATC | 2 cut(s) | 127, 262 |
| LpnPI | CCDG | 6 cut(s) | 57, 75, 84, 102, 207, 234 |
| MaeII | ACGT | 1 cut(s) | 14 |
| MaeIII | GTNAC | 1 cut(s) | 169 |
| MalI | GATC | 2 cut(s) | 129, 264 |
| MboI | GATC | 2 cut(s) | 127, 262 |
| MboII | GAAGA | 3 cut(s) | 170, 266, 269 |
| MflI | RGATCY | 1 cut(s) | 127 |
| MluCI | AATT | 3 cut(s) | 44, 94, 163 |
| MnlI | CCTC | 2 cut(s) | 78, 227 |
| MslI | CAYNNNNRTG | 1 cut(s) | 153 |
| MspR9I | CCNGG | 3 cut(s) | 72, 90, 222 |
| MvaI | CCWGG | 3 cut(s) | 72, 90, 222 |
| NdeII | GATC | 2 cut(s) | 127, 262 |
| NlaIII | CATG | 2 cut(s) | 28, 152 |
| NmuCI | GTSAC | 1 cut(s) | 169 |
| PasI | CCCWGGG | 1 cut(s) | 89 |
| PfoI | TCCNGGA | 1 cut(s) | 70 |
| Psp6I | CCWGG | 3 cut(s) | 70, 88, 220 |
| PspGI | CCWGG | 3 cut(s) | 70, 88, 220 |
| PsuI | RGATCY | 1 cut(s) | 127 |
| RseI | CAYNNNNRTG | 1 cut(s) | 153 |
| Sau3AI | GATC | 2 cut(s) | 127, 262 |
| ScrFI | CCNGG | 3 cut(s) | 72, 90, 222 |
| SetI | ASST | 2 cut(s) | 17, 223 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 153 |
| Sse9I | AATT | 3 cut(s) | 44, 94, 163 |
| SsiI | CCGC | 1 cut(s) | 188 |
| StyD4I | CCNGG | 3 cut(s) | 70, 88, 220 |
| TaiI | ACGT | 1 cut(s) | 17 |
| TaqI | TCGA | 1 cut(s) | 17 |
| TasI | AATT | 3 cut(s) | 44, 94, 163 |
| TscAI | CASTG | 1 cut(s) | 208 |
| TseFI | GTSAC | 1 cut(s) | 169 |
| Tsp45I | GTSAC | 1 cut(s) | 169 |
| TspDTI | ATGAA | 3 cut(s) | 17, 41, 171 |
| TspRI | CASTG | 1 cut(s) | 208 |
| XapI | RAATTY | 1 cut(s) | 163 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 118 |
| ZraI | GACGTC | 1 cut(s) | 15 |