FvH4_3g31261
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0007480
Physical Location & Seq
Reverse (-)
25176453 .. 25178845
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31261.t1

Sequence Viewer

Length: 1863 bp
ATGATTCGCGTACGAGATGTCTTAAAGTTACTACAAGACAATCAACTATGTTTGAATGCAAAGAAGTGTGAGTTTGCGCAGAAGGAATTGGTGTATCTCGAGTTTATAGTTGGTGGAGGTCAACGGAAGATTGATCCAAGGAAGGTTGAGGTCATCTCTAAGTGGCCTAGACCCAAGACAGTAACAGAAGTCCGAAGTTTCGTGGGAGCTTGCCAGTATGTACGCAAGTTTATTCGAGATTTCTCTACTCATGCAGCACCTTTGCACGGGCTGACAAAAGCTGGACAGAAATTTGAGTGGAGTGAAAAGCATGAAGAAGCTTTCCAGCTTTTAAAGAGGAAAATTTCAGAAGCTCCAGTACTAGCCCTGCCGAGTCTGCAACGCCCTTTTGAGGTGGAGACTGACGCGTCTACCTATGCTATGGGAGCCGTTCTGTTACAAGATGGGAAGCCAGTAGAATACTACTCTGAGTTATTCACTGGATCCATCAGAAACTATCTAACCTACGACAAGGAGTTTTATGCACTTTACCAAGCCATCAAGCATTGGAGGGTGTTCTTGTTAGGGAAGGAGGTAGTAGTACATTCAGATCACAAGCCATTGGAATATCTTCATGCTCAAACCAAGCTACAACAAGCCAGGCACATGAAGTGGATGTCATATTTAATGACTTTTGACATAGTCATCCGATACAAGAAGGGGATCACCAACAAGTTGGCTGATATGTTGTCAAGACCACCTGTGAGAGTTTGTGCCTTGGTAGTGGCTATGCGTATACAACCTTTGGTTCCAACTGAGTACGCAACTTTGTATGAATCAGATAAAGGTTTCAAGGAAGTATATGAGCAAGCAAAACGAGTGCAGAAAGGGGAGTTTGAGATACGAGATGGTTTGTTGTATAAGGGATCATTGTTATGCATACCAGAAGAGGGAGATCGATTACAGAGGATTCGAGAAGCACATACTTCAAGAGTGGCTGGACACTTTGGAGTTAATAAGACTTTGTTGAATTTATGGCGTTATGTCTTCTGGCCTAAGATGCAGGATGATGTTTCCAGATTTGTTCGAGGGTGTAAGTTGTGTTGTACTTCGAAACCAGCGAACATGAAGAGAGGGTTGTATCTACCATTGCCGGTACCGTCTCGTCCTTGGGACAGTATTTCCATGGATTTCTTGGGAGGTTTACCGAAGGCCAAGTCTGGGAATGACTATTTATATGTTGTGGTCGATCGTTTTAGTAAAATGGTGGTTCTCATTCCTTGCAAGAAGACCATTACAGGGGCTGGTGCAGCTAAGTTATTCTTTGAGAATGTCTGGAAGCATTTTGGGTTGCCTAGTTCGATTATTTCTGATCATGACAGCAGGTTTCTTGGTCACTTTTGGGATTCTTTGTGGGGAATGATGGATACACGCCTAAAAAGAAGTACAGCCTTTCATCCACAAACGGATGGCCAGACTGAAGTAGTTAACAGAACTATGGTGCATCTATTGCGGGGATACAATGCTAAGCATCCGAAGACTTGGGATGAGAGTCTTCCGTATTTACAGTTTGCTTTCAACAGGGCTGTTCATAGTTCTTCTGGGACATCTCCATTTGAAGCTTGTTCTGGCTACTTACCGCCAAGTCCGTTTGATATGGTTTTTACTGTAGGTGAAGGTAAGAAGTTGAAGCCACTTCGGTACGGTCCTTTCCGTATTCTGCAGCAGATTGGCGACAATGCCTTCAGGCTCGACTTGCCGCCATATTTGGGCATGTATTCAGTTATCAATGCTGAGTACTTGAAGTTGTTTGAACCACCATTGCTTGATGATGATGGGGATGACAAGATTAGGAATAGTCTTCAGGTTAGTTATGGATTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

621

Amino Acids

71.32

Weight (kDa)

9.35

Isoelectric Point (pI)

38.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 100 - 194 3.7e-29 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 127 - 225 1e-28 RNase H-like domain found in reverse transcriptase
Integrase_H2C2 PF17921 313 - 366 7.5e-16 Integrase zinc binding domain
rve PF00665 381 - 474 5e-07 Integrase core domain
SH3_Tf2-1 PF24626 550 - 596 3.4e-10 Tf2-1-like, SH3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 406
Acc16I TGCGCA 1 cut(s) 78
Acc36I ACCTGC 1 cut(s) 1353
Acc65I GGTACC 1 cut(s) 1135
AccB1I GGYRCC 1 cut(s) 1135
AccI GTMKAC 2 cut(s) 410, 775
AccII CGCG 2 cut(s) 9, 407
AciI CCGC 3 cut(s) 1492, 1619, 1739
AclWI GGATC 5 cut(s) 128, 477, 490, 710, 913
AcoI YGGCCR 1 cut(s) 1450
AcsI RAATTY 3 cut(s) 290, 342, 1009
AcuI CTGAAG 3 cut(s) 1479, 1708, 1826
AfiI CCNNNNNNNGG 6 cut(s) 266, 391, 929, 1200, 1278, 1748
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 9 cut(s) 55, 832, 969, 1009, 1558, 1598, 1669, 1783, 1793
AjnI CCWGG 1 cut(s) 638
AluBI AGCT 8 cut(s) 209, 281, 320, 328, 353, 628, 1292, 1601
AluI AGCT 8 cut(s) 209, 281, 320, 328, 353, 628, 1292, 1601
Alw26I GTCTC 2 cut(s) 392, 1146
AlwI GGATC 5 cut(s) 128, 477, 490, 710, 913
AlwNI CAGNNNCTG 1 cut(s) 1283
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 4 cut(s) 164, 1031, 1191, 1450
ApeKI GCWGC 3 cut(s) 254, 1289, 1702
ApoI RAATTY 3 cut(s) 290, 342, 1009
ArsI GACNNNNNNTTYG 2 cut(s) 1181, 1213
Asp700I GAANNNNTTC 1 cut(s) 609
Asp718I GGTACC 1 cut(s) 1135
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 1685
AsuHPI GGTGA 2 cut(s) 697, 1664
AsuII TTCGAA 1 cut(s) 1091
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 1 cut(s) 1685
BalI TGGCCA 1 cut(s) 1452
BamHI GGATCC 1 cut(s) 482
BanI GGYRCC 1 cut(s) 1135
BarI GAAGNNNNNNTAC 2 cut(s) 342, 374
BbsI GAAGAC 5 cut(s) 1018, 1274, 1523, 1526, 1832
BbvI GCAGC 3 cut(s) 266, 1301, 1714
BccI CCATC 7 cut(s) 437, 494, 545, 881, 1396, 1442, 1808
BceAI ACGGC 1 cut(s) 413
BciT130I CCWGG 1 cut(s) 640
BciVI GTATCC 2 cut(s) 1399, 1490
BclI TGATCA 1 cut(s) 1351
BcoDI GTCTC 2 cut(s) 392, 1146
BfaI CTAG 4 cut(s) 168, 362, 1335, 1861
BfmI CTRYAG 2 cut(s) 1647, 1700
BfuAI ACCTGC 1 cut(s) 1353
BfuI GTATCC 2 cut(s) 1399, 1490
BisI GCNGC 4 cut(s) 255, 1290, 1703, 1739
BlpI GCTNAGC 1 cut(s) 1506
BlsI GCNGC 4 cut(s) 256, 1291, 1704, 1740
BmcAI AGTACT 2 cut(s) 360, 1778
Bme1390I CCNGG 1 cut(s) 640
Bme18I GGWCC 1 cut(s) 1685
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 1 cut(s) 1685
BmiI GGNNCC 4 cut(s) 427, 484, 789, 1137
BmrFI CCNGG 1 cut(s) 640
BmsI GCATC 3 cut(s) 1029, 1492, 1519
BpiI GAAGAC 5 cut(s) 1018, 1274, 1523, 1526, 1832
BplI GAGNNNNNCTC 2 cut(s) 140, 172
BpmI CTGGAG 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 1506
Bpu14I TTCGAA 1 cut(s) 1091
Bsa29I ATCGAT 1 cut(s) 937
BsaJI CCNNGG 4 cut(s) 137, 756, 1148, 1164
Bsc4I CCNNNNNNNGG 6 cut(s) 266, 391, 929, 1200, 1278, 1748
Bse118I RCCGGY 1 cut(s) 1132
Bse1I ACTGG 4 cut(s) 214, 356, 452, 484
Bse3DI GCAATG 2 cut(s) 1127, 1799
BseBI CCWGG 1 cut(s) 640
BseCI ATCGAT 1 cut(s) 937
BseDI CCNNGG 4 cut(s) 137, 756, 1148, 1164
BseGI GGATG 8 cut(s) 660, 684, 1051, 1435, 1453, 1510, 1531, 1825
BseLI CCNNNNNNNGG 6 cut(s) 266, 391, 929, 1200, 1278, 1748
BseMI GCAATG 2 cut(s) 1127, 1799
BseMII CTCAG 3 cut(s) 459, 786, 1764
BseNI ACTGG 4 cut(s) 214, 356, 452, 484
BseXI GCAGC 3 cut(s) 266, 1301, 1714
BsgI GTGCAG 2 cut(s) 881, 1308
Bsh1236I CGCG 2 cut(s) 9, 407
Bsh1285I CGRYCG 1 cut(s) 1231
BshFI GGCC 4 cut(s) 166, 1033, 1193, 1452
BshNI GGYRCC 1 cut(s) 1135
BshVI ATCGAT 1 cut(s) 937
BsiEI CGRYCG 1 cut(s) 1231
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 1 cut(s) 1133
BsiWI CGTACG 1 cut(s) 10
BslFI GGGAC 2 cut(s) 1166, 1597
BslI CCNNNNNNNGG 6 cut(s) 266, 391, 929, 1200, 1278, 1748
BsmAI GTCTC 2 cut(s) 392, 1146
BsmBI CGTCTC 1 cut(s) 1146
BsmFI GGGAC 2 cut(s) 1166, 1597
BsmI GAATGC 1 cut(s) 61
BsnI GGCC 4 cut(s) 166, 1033, 1193, 1452
BsoBI CYCGRG 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 1091
Bsp143I GATC 8 cut(s) 133, 482, 589, 702, 905, 934, 1228, 1351
Bsp1720I GCTNAGC 1 cut(s) 1506
Bsp19I CCATGG 1 cut(s) 1164
BspACI CCGC 3 cut(s) 1492, 1619, 1739
BspANI GGCC 4 cut(s) 166, 1033, 1193, 1452
BspCNI CTCAG 3 cut(s) 460, 787, 1765
BspDI ATCGAT 1 cut(s) 937
BspFNI CGCG 2 cut(s) 9, 407
BspHI TCATGA 1 cut(s) 1354
BspLI GGNNCC 4 cut(s) 427, 484, 789, 1137
BspMAI CTGCAG 1 cut(s) 1704
BspMI ACCTGC 1 cut(s) 1353
BspPI GGATC 5 cut(s) 128, 477, 490, 710, 913
BspT104I TTCGAA 1 cut(s) 1091
BspT107I GGYRCC 1 cut(s) 1135
BsrDI GCAATG 2 cut(s) 1127, 1799
BsrFI RCCGGY 1 cut(s) 1132
BsrI ACTGG 4 cut(s) 214, 356, 452, 484
BssAI RCCGGY 1 cut(s) 1132
BssECI CCNNGG 4 cut(s) 137, 756, 1148, 1164
BssMI GATC 8 cut(s) 133, 482, 589, 702, 905, 934, 1228, 1351
BssNAI GTATAC 1 cut(s) 776
BssT1I CCWWGG 4 cut(s) 137, 756, 1148, 1164
Bst1107I GTATAC 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 640
Bst4CI ACNGT 6 cut(s) 181, 1140, 1157, 1548, 1648, 1685
Bst6I CTCTTC 2 cut(s) 921, 1103
BstAPI GCANNNNNTGC 1 cut(s) 1489
BstBI TTCGAA 1 cut(s) 1091
BstC8I GCNNGC 2 cut(s) 211, 849
BstDEI CTNAG 7 cut(s) 159, 468, 795, 1035, 1293, 1506, 1773
BstDSI CCRYGG 1 cut(s) 1164
BstF5I GGATG 8 cut(s) 660, 684, 1051, 1435, 1453, 1510, 1531, 1825
BstFNI CGCG 2 cut(s) 9, 407
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 8 cut(s) 136, 485, 592, 705, 908, 937, 1231, 1354
BstMAI GTCTC 2 cut(s) 392, 1146
BstMBI GATC 8 cut(s) 133, 482, 589, 702, 905, 934, 1228, 1351
BstMCI CGRYCG 1 cut(s) 1231
BstMWI GCNNNNNNNGC 6 cut(s) 376, 425, 1039, 1289, 1489, 1735
BstNI CCWGG 1 cut(s) 640
BstNSI RCATGY 1 cut(s) 1756
BstSCI CCNGG 1 cut(s) 638
BstSFI CTRYAG 2 cut(s) 1647, 1700
BstUI CGCG 2 cut(s) 9, 407
BstV1I GCAGC 3 cut(s) 266, 1301, 1714
BstV2I GAAGAC 5 cut(s) 1018, 1274, 1523, 1526, 1832
BstX2I RGATCY 1 cut(s) 482
BstXI CCANNNNNNTGG 1 cut(s) 715
BstYI RGATCY 1 cut(s) 482
BstZ17I GTATAC 1 cut(s) 776
Bsu15I ATCGAT 1 cut(s) 937
BsuI GTATCC 2 cut(s) 1399, 1490
BsuRI GGCC 4 cut(s) 166, 1033, 1193, 1452
BsuTUI ATCGAT 1 cut(s) 937
BtgI CCRYGG 1 cut(s) 1164
BtsCI GGATG 8 cut(s) 660, 684, 1051, 1435, 1453, 1510, 1531, 1825
BtsIMutI CAGTG 1 cut(s) 477
BveI ACCTGC 1 cut(s) 1353
Cac8I GCNNGC 2 cut(s) 211, 849
CaiI CAGNNNCTG 1 cut(s) 1283
CciI TCATGA 1 cut(s) 1354
CfoI GCGC 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 1132
Cfr13I GGNCC 1 cut(s) 1685
ClaI ATCGAT 1 cut(s) 937
CseI GACGC 2 cut(s) 396, 413
CviAII CATG 8 cut(s) 251, 311, 614, 646, 1105, 1165, 1355, 1753
DdeI CTNAG 7 cut(s) 159, 468, 795, 1035, 1293, 1506, 1773
DpnI GATC 8 cut(s) 135, 484, 591, 704, 907, 936, 1230, 1353
DpnII GATC 8 cut(s) 133, 482, 589, 702, 905, 934, 1228, 1351
DraI TTTAAA 1 cut(s) 333
DrdI GACNNNNNNGTC 1 cut(s) 406
DseDI GACNNNNNNGTC 1 cut(s) 406
EaeI YGGCCR 1 cut(s) 1450
Eam1104I CTCTTC 2 cut(s) 921, 1103
EarI CTCTTC 2 cut(s) 921, 1103
Eco130I CCWWGG 4 cut(s) 137, 756, 1148, 1164
Eco47I GGWCC 1 cut(s) 1685
Eco57I CTGAAG 3 cut(s) 1479, 1708, 1826
Eco88I CYCGRG 1 cut(s) 98
EcoRII CCWGG 1 cut(s) 638
EcoT14I CCWWGG 4 cut(s) 137, 756, 1148, 1164
EcoT22I ATGCAT 1 cut(s) 920
ErhI CCWWGG 4 cut(s) 137, 756, 1148, 1164
Esp3I CGTCTC 1 cut(s) 1146
FaeI CATG 8 cut(s) 254, 314, 617, 649, 1108, 1168, 1358, 1756
FalI AAGNNNNNCTT 2 cut(s) 1286, 1318
FaqI GGGAC 2 cut(s) 1166, 1597
FatI CATG 8 cut(s) 250, 310, 613, 645, 1104, 1164, 1354, 1752
FauI CCCGC 1 cut(s) 1485
FbaI TGATCA 1 cut(s) 1351
FblI GTMKAC 2 cut(s) 410, 775
Fnu4HI GCNGC 4 cut(s) 255, 1290, 1703, 1739
FokI GGATG 8 cut(s) 667, 671, 1058, 1422, 1460, 1497, 1538, 1832
Fsp4HI GCNGC 4 cut(s) 255, 1290, 1703, 1739
FspBI CTAG 4 cut(s) 168, 362, 1335, 1861
FspI TGCGCA 1 cut(s) 78
GlaI GCGC 1 cut(s) 78
GluI GCNGC 4 cut(s) 255, 1290, 1703, 1739
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 4 cut(s) 166, 1033, 1193, 1452
HapII CCGG 1 cut(s) 1133
HgaI GACGC 2 cut(s) 396, 413
HhaI GCGC 1 cut(s) 79
Hin1II CATG 8 cut(s) 254, 314, 617, 649, 1108, 1168, 1358, 1756
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 2 cut(s) 122, 1468
HindII GTYRAC 2 cut(s) 122, 1468
HindIII AAGCTT 2 cut(s) 318, 1599
HinfI GANTC 7 cut(s) 4, 373, 815, 949, 1385, 1531, 1857
HpaI GTTAAC 1 cut(s) 1468
HpaII CCGG 1 cut(s) 1133
HphI GGTGA 2 cut(s) 697, 1664
Hpy166II GTNNAC 5 cut(s) 122, 411, 776, 1184, 1468
Hpy188I TCNGA 9 cut(s) 194, 349, 469, 491, 589, 689, 820, 1351, 1515
Hpy188III TCNNGA 8 cut(s) 98, 236, 732, 953, 969, 1056, 1315, 1355
Hpy8I GTNNAC 5 cut(s) 122, 411, 776, 1184, 1468
HpyAV CCTTC 7 cut(s) 76, 136, 562, 691, 1183, 1649, 1732
HpyCH4III ACNGT 6 cut(s) 181, 1140, 1157, 1548, 1648, 1685
HpyF10VI GCNNNNNNNGC 6 cut(s) 376, 425, 1039, 1289, 1489, 1735
HpyF3I CTNAG 7 cut(s) 159, 468, 795, 1035, 1293, 1506, 1773
Hsp92II CATG 8 cut(s) 254, 314, 617, 649, 1108, 1168, 1358, 1756
HspAI GCGC 1 cut(s) 77
KpnI GGTACC 1 cut(s) 1139
Ksp22I TGATCA 1 cut(s) 1351
KspAI GTTAAC 1 cut(s) 1468
Kzo9I GATC 8 cut(s) 133, 482, 589, 702, 905, 934, 1228, 1351
LmnI GCTCC 3 cut(s) 206, 358, 425
Lsp1109I GCAGC 3 cut(s) 266, 1301, 1714
LweI GCATC 3 cut(s) 1029, 1492, 1519
MaeI CTAG 4 cut(s) 168, 362, 1335, 1861
MaeIII GTNAC 4 cut(s) 27, 181, 435, 1373
MalI GATC 8 cut(s) 135, 484, 591, 704, 907, 936, 1230, 1353
MboI GATC 8 cut(s) 133, 482, 589, 702, 905, 934, 1228, 1351
MflI RGATCY 1 cut(s) 482
MlsI TGGCCA 1 cut(s) 1452
MluCI AATT 4 cut(s) 86, 290, 342, 1009
MluI ACGCGT 1 cut(s) 405
MluNI TGGCCA 1 cut(s) 1452
MlyI GAGTC 2 cut(s) 382, 1540
MmeI TCCRAC 1 cut(s) 815
Mox20I TGGCCA 1 cut(s) 1452
Mph1103I ATGCAT 1 cut(s) 920
MroXI GAANNNNTTC 1 cut(s) 609
MscI TGGCCA 1 cut(s) 1452
MseI TTAA 5 cut(s) 23, 332, 665, 993, 1467
MslI CAYNNNNRTG 1 cut(s) 913
Msp20I TGGCCA 1 cut(s) 1452
MspI CCGG 1 cut(s) 1133
MspR9I CCNGG 1 cut(s) 640
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 1 cut(s) 640
MvnI CGCG 2 cut(s) 9, 407
MwoI GCNNNNNNNGC 6 cut(s) 376, 425, 1039, 1289, 1489, 1735
NcoI CCATGG 1 cut(s) 1164
NdeII GATC 8 cut(s) 133, 482, 589, 702, 905, 934, 1228, 1351
NlaIII CATG 8 cut(s) 254, 314, 617, 649, 1108, 1168, 1358, 1756
NlaIV GGNNCC 4 cut(s) 427, 484, 789, 1137
NmeAIII GCCGAG 1 cut(s) 396
NmuCI GTSAC 1 cut(s) 1373
NsbI TGCGCA 1 cut(s) 78
NsiI ATGCAT 1 cut(s) 920
NspI RCATGY 1 cut(s) 1756
NspV TTCGAA 1 cut(s) 1091
PaeR7I CTCGAG 1 cut(s) 98
PagI TCATGA 1 cut(s) 1354
PcsI WCGNNNNNNNCGW 1 cut(s) 1097
PctI GAATGC 1 cut(s) 61
PdmI GAANNNNTTC 1 cut(s) 609
PfeI GAWTC 5 cut(s) 4, 815, 949, 1385, 1857
Pfl23II CGTACG 1 cut(s) 10
PflFI GACNNNGTC 1 cut(s) 680
PkrI GCNGC 4 cut(s) 256, 1291, 1704, 1740
Ple19I CGATCG 1 cut(s) 1231
PleI GAGTC 2 cut(s) 381, 1539
PpsI GAGTC 2 cut(s) 381, 1539
Psp6I CCWGG 1 cut(s) 638
PspGI CCWGG 1 cut(s) 638
PspLI CGTACG 1 cut(s) 10
PspN4I GGNNCC 4 cut(s) 427, 484, 789, 1137
PspPI GGNCC 1 cut(s) 1685
PstI CTGCAG 1 cut(s) 1704
PstNI CAGNNNCTG 1 cut(s) 1283
PsuI RGATCY 1 cut(s) 482
PsyI GACNNNGTC 1 cut(s) 680
PvuI CGATCG 1 cut(s) 1231
RseI CAYNNNNRTG 1 cut(s) 913
SaqAI TTAA 5 cut(s) 23, 332, 665, 993, 1467
SatI GCNGC 4 cut(s) 255, 1290, 1703, 1739
Sau3AI GATC 8 cut(s) 133, 482, 589, 702, 905, 934, 1228, 1351
Sau96I GGNCC 1 cut(s) 1685
ScaI AGTACT 2 cut(s) 360, 1778
SchI GAGTC 2 cut(s) 382, 1540
ScrFI CCNGG 1 cut(s) 640
SfaNI GCATC 3 cut(s) 1029, 1492, 1519
SfcI CTRYAG 2 cut(s) 1647, 1700
Sfr274I CTCGAG 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 1091
SinI GGWCC 1 cut(s) 1685
SlaI CTCGAG 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 913
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
Sse9I AATT 4 cut(s) 86, 290, 342, 1009
SsiI CCGC 3 cut(s) 1492, 1619, 1739
SspMI CTAG 4 cut(s) 168, 362, 1335, 1861
StyD4I CCNGG 1 cut(s) 638
StyI CCWWGG 4 cut(s) 137, 756, 1148, 1164
TaaI ACNGT 6 cut(s) 181, 1140, 1157, 1548, 1648, 1685
TaqI TCGA 9 cut(s) 99, 235, 937, 952, 1066, 1091, 1227, 1340, 1731
TasI AATT 4 cut(s) 86, 290, 342, 1009
TatI WGTACW 5 cut(s) 358, 580, 1085, 1424, 1776
TauI GCSGC 1 cut(s) 1741
TfiI GAWTC 5 cut(s) 4, 815, 949, 1385, 1857
Tru1I TTAA 5 cut(s) 23, 332, 665, 993, 1467
Tru9I TTAA 5 cut(s) 23, 332, 665, 993, 1467
TscAI CASTG 1 cut(s) 484
TseFI GTSAC 1 cut(s) 1373
TseI GCWGC 3 cut(s) 254, 1289, 1702
Tsp45I GTSAC 1 cut(s) 1373
TspDTI ATGAA 7 cut(s) 327, 602, 662, 828, 1121, 1424, 1559
TspGWI ACGGA 5 cut(s) 139, 1460, 1527, 1617, 1682
TspRI CASTG 1 cut(s) 484
Tth111I GACNNNGTC 1 cut(s) 680
VpaK11BI GGWCC 1 cut(s) 1685
XapI RAATTY 3 cut(s) 290, 342, 1009
XceI RCATGY 1 cut(s) 1756
XcmI CCANNNNNNNNNTGG 1 cut(s) 1171
XhoI CTCGAG 1 cut(s) 98
XmiI GTMKAC 2 cut(s) 410, 775
XmnI GAANNNNTTC 1 cut(s) 609
XspI CTAG 4 cut(s) 168, 362, 1335, 1861
ZrmI AGTACT 2 cut(s) 360, 1778
Zsp2I ATGCAT 1 cut(s) 920
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.