Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0007480

Physical Location & Seq

Genomic Coordinates Reverse (-)

31674506 .. 31675201

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g33447.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGCATATCAGGTGGGTGACGTTCTTGCAGAAATTTCCTTTTGTGATCAAGCATAAATCTGGAACACTCAACAAGGTGGCAGATCTATTGAGCAGGCGAGCTAGTTTGTTGGTTACTTTGTCTCAAGATGTAACTGGTTTTGACTTTTTGAAGGAATTATATGAGGCAGATGATGATTTCAAGCAGGTTTGGGAGCAGTGTGTTAGCAAGAAACAACTAGTTGCTGGTTTCCTTATCCATGAAGGTTATTTGTTTCGTGGCAATAAGCTATGTGTGCCCAAATCTTCTTTGAGAGAGAAGCTGATTCGTGATTTGCATGGGGGAGGATTAAGCGGTCACTTTGGGAAAGACAAGACAACTACAAGCTTGGAGGAGCATTATTACTGGCCTCAATTAAAGCGAGATGTCAGCAATATTGTCAGGAAGTGCTATGTTTGTCAGGTATCTAAAGGTCAGTCCCAGAATATTGGTCTTTACATGCTTTTACTCGTTCCTGATGATATTTGGCAAGATGTTTCTATGGACTTTGTATTGGGTTTACCTCAGACTCAAAGAGGAGTGGATTCTGTGTTTGTGGTGGTGGATAGATTTTCAAAGATGAGTCACTTCATTCCTTACAAGAAAACTGCAGATGCTGTGAATATAGCCAAACTGTTTTTAAGGGAGCTAGGTTGTTCGATTGCATGGAGTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 Retrotrans_gag rve zf-CCHC zf-H2C2

Protein Analysis

232

Amino Acids

26.45

Weight (kDa)

9.12

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Integrase_H2C2	PF17921	94 - 150	1.4e-18	Integrase zinc binding domain
zf-H2C2	PF09337	113 - 147	1.7e-08	H2C2 zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0007480)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20082 FvH4_1g29103 FvH4_1g29431 FvH4_1g29732 FvH4_1g29761 FvH4_2g03391 FvH4_2g05501 FvH4_2g12792 FvH4_2g19253 FvH4_3g31261 FvH4_4g12741 FvH4_4g33447 FvH4_5g39021 FvH4_6g15231 FvH4_6g15232 FvH4_7g32351
malus_domestica	MD07G1221100.v1.1
prunus_persica	Prupe.8G084500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097291 RchiOBHm_Chr3g0497281 RchiOBHm_Chr5g0015161 RchiOBHm_Chr7g0243211 RchiOBHm_Chr7g0243231
rosa_roxburghii	Rroxscaffold_7G00175870
rosa_wichuraiana	Rw4G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	175
AciI	CCGC	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	32
AgsI	TTSAA	3 cut(s)	151, 181, 594
AhlI	ACTAGT	1 cut(s)	217
AluBI	AGCT	5 cut(s)	101, 268, 301, 366, 667
AluI	AGCT	5 cut(s)	101, 268, 301, 366, 667
Alw26I	GTCTC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	279
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	126
BcuI	ACTAGT	1 cut(s)	217
BfaI	CTAG	3 cut(s)	102, 218, 668
BfmI	CTRYAG	1 cut(s)	627
BfuAI	ACCTGC	1 cut(s)	175
BglII	AGATCT	1 cut(s)	82
BmsI	GCATC	1 cut(s)	622
BpuEI	CTTGAG	1 cut(s)	108
Bse1I	ACTGG	2 cut(s)	139, 389
BseMII	CTCAG	1 cut(s)	557
BseNI	ACTGG	2 cut(s)	139, 389
BseRI	GAGGAG	2 cut(s)	386, 570
BseSI	GKGCMC	1 cut(s)	279
BshFI	GGCC	1 cut(s)	388
BslFI	GGGAC	1 cut(s)	442
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	442
BsnI	GGCC	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	45, 82
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	1 cut(s)	388
BspCNI	CTCAG	1 cut(s)	556
BspMAI	CTGCAG	1 cut(s)	631
BspMI	ACCTGC	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	139, 389
BssMI	GATC	2 cut(s)	45, 82
Bst4CI	ACNGT	1 cut(s)	654
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstC8I	GCNNGC	2 cut(s)	95, 99
BstDEI	CTNAG	1 cut(s)	543
BstKTI	GATC	2 cut(s)	48, 85
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	2 cut(s)	45, 82
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 689
BstNSI	RCATGY	1 cut(s)	481
BstSFI	CTRYAG	1 cut(s)	627
BstSLI	GKGCMC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	82
BstXI	CCANNNNNNTGG	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	388
BtsI	GCAGTG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	203
BveI	ACCTGC	1 cut(s)	175
Cac8I	GCNNGC	2 cut(s)	95, 99
CaiI	CAGNNNCTG	1 cut(s)	635
CviAII	CATG	4 cut(s)	239, 317, 478, 684
CviJI	RGCY	7 cut(s)	101, 268, 301, 366, 388, 647, 667
CviKI_1	RGCY	7 cut(s)	101, 268, 301, 366, 388, 647, 667
DdeI	CTNAG	1 cut(s)	543
DpnI	GATC	2 cut(s)	47, 84
DpnII	GATC	2 cut(s)	45, 82
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	4 cut(s)	242, 320, 481, 687
FaqI	GGGAC	1 cut(s)	442
FatI	CATG	4 cut(s)	238, 316, 477, 683
FbaI	TGATCA	1 cut(s)	45
FspBI	CTAG	3 cut(s)	102, 218, 668
HaeIII	GGCC	1 cut(s)	388
Hin1II	CATG	4 cut(s)	242, 320, 481, 687
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	4 cut(s)	304, 547, 563, 601
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	1 cut(s)	546
Hpy188III	TCNNGA	5 cut(s)	60, 125, 308, 421, 494
Hpy8I	GTNNAC	1 cut(s)	539
HpyAV	CCTTC	2 cut(s)	145, 236
HpyCH4III	ACNGT	1 cut(s)	654
HpyCH4IV	ACGT	1 cut(s)	20
HpyCH4V	TGCA	5 cut(s)	4, 28, 316, 629, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 689
HpyF3I	CTNAG	1 cut(s)	543
HpySE526I	ACGT	1 cut(s)	20
Hsp92II	CATG	4 cut(s)	242, 320, 481, 687
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	45, 82
LmnI	GCTCC	3 cut(s)	193, 373, 664
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	3 cut(s)	102, 218, 668
MaeII	ACGT	1 cut(s)	20
MaeIII	GTNAC	5 cut(s)	16, 112, 130, 335, 602
MalI	GATC	2 cut(s)	47, 84
MboI	GATC	2 cut(s)	45, 82
MboII	GAAGA	1 cut(s)	276
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	3 cut(s)	32, 155, 392
MlyI	GAGTC	2 cut(s)	541, 610
MnlI	CCTC	6 cut(s)	157, 317, 364, 399, 548, 552
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	3 cut(s)	329, 395, 659
MwoI	GCNNNNNNNGC	2 cut(s)	274, 689
NdeII	GATC	2 cut(s)	45, 82
NlaIII	CATG	4 cut(s)	242, 320, 481, 687
NmuCI	GTSAC	3 cut(s)	16, 335, 602
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	481
PfeI	GAWTC	2 cut(s)	304, 563
PleI	GAGTC	2 cut(s)	541, 609
PpsI	GAGTC	2 cut(s)	541, 609
PstI	CTGCAG	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	82
SaqAI	TTAA	3 cut(s)	329, 395, 659
Sau3AI	GATC	2 cut(s)	45, 82
SchI	GAGTC	2 cut(s)	541, 610
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	1 cut(s)	622
SfcI	CTRYAG	1 cut(s)	627
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
SpeI	ACTAGT	1 cut(s)	217
Sse9I	AATT	3 cut(s)	32, 155, 392
SsiI	CCGC	1 cut(s)	333
SspI	AATATT	2 cut(s)	415, 466
SspMI	CTAG	3 cut(s)	102, 218, 668
TaaI	ACNGT	1 cut(s)	654
TaiI	ACGT	1 cut(s)	23
TaqI	TCGA	1 cut(s)	677
TasI	AATT	3 cut(s)	32, 155, 392
TfiI	GAWTC	2 cut(s)	304, 563
Tru1I	TTAA	3 cut(s)	329, 395, 659
Tru9I	TTAA	3 cut(s)	329, 395, 659
TscAI	CASTG	1 cut(s)	203
TseFI	GTSAC	3 cut(s)	16, 335, 602
Tsp45I	GTSAC	3 cut(s)	16, 335, 602
TspDTI	ATGAA	2 cut(s)	255, 598
TspRI	CASTG	1 cut(s)	203
XapI	RAATTY	1 cut(s)	32
XceI	RCATGY	1 cut(s)	481
XspI	CTAG	3 cut(s)	102, 218, 668
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.