FvH4_1g29431
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0007480
Physical Location & Seq
Reverse (-)
22496035 .. 22496493
459 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29431.t1

Sequence Viewer

Length: 459 bp
ATGAAGAAAGGCAAGTTTCACTGGGGTGAAGAGCAAGAGCAAAGTTTTGCACTTATCAAAGAGAAGCTTTGTACCGCACCAGTTTTGGCTCTTCCAGATTTTGACAAGATATTCGAGGTCGAATGTGATGCTAGTGGTGTTGGAGTGGGGGCTGTCTTGTCCCAAGAAAAGAGGGCAGTGGCTTTCTTTAGCGAGAAGTTGAGTGAAGCTCGCCAAAAATGGAGTACATATGACCAAGAGTTCTATGCAGTAGTGAGAGCTTTAAGGCAATGGGAGCATTATCTGATCCAAAGAGGGTTTATTCTGTTCACTGATCATCAGGCTTTGAAGTTTCTGAACAGTCAGAAACATGCAAACAAGATGCATATCAGATGGGTGACGTTTTTGCAGAAATTTCCTTTTGTGATCAAGCATAAGTCGGGAACACTCAACAAGGTGGCTGATGCGTTGAGCAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

153

Amino Acids

17.66

Weight (kDa)

9.37

Isoelectric Point (pI)

63.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RT_RNaseH_2 PF17919 8 - 101 2.1e-31 RNase H-like domain found in reverse transcriptase
RT_RNaseH PF17917 33 - 132 6.7e-34 RNase H-like domain found in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 444
AciI CCGC 1 cut(s) 75
AclWI GGATC 1 cut(s) 280
AcsI RAATTY 1 cut(s) 392
AfaI GTAC 2 cut(s) 73, 226
AgsI TTSAA 1 cut(s) 328
AleI CACNNNNGTG 1 cut(s) 24
AluBI AGCT 3 cut(s) 67, 209, 260
AluI AGCT 3 cut(s) 67, 209, 260
AlwI GGATC 1 cut(s) 280
ApoI RAATTY 1 cut(s) 392
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
AsuHPI GGTGA 2 cut(s) 38, 388
BccI CCATC 1 cut(s) 366
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BclI TGATCA 2 cut(s) 313, 405
BfaI CTAG 1 cut(s) 132
BfuAI ACCTGC 1 cut(s) 444
BmrI ACTGGG 1 cut(s) 31
BmsI GCATC 3 cut(s) 118, 351, 433
BmuI ACTGGG 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 193, 225
BsaBI GATNNNNATC 1 cut(s) 365
Bse1I ACTGG 2 cut(s) 26, 80
Bse3DI GCAATG 1 cut(s) 275
Bse8I GATNNNNATC 1 cut(s) 365
BseJI GATNNNNATC 1 cut(s) 365
BseMI GCAATG 1 cut(s) 275
BseNI ACTGG 2 cut(s) 26, 80
BslFI GGGAC 1 cut(s) 145
BsmFI GGGAC 1 cut(s) 145
Bsp143I GATC 3 cut(s) 285, 313, 405
BspACI CCGC 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 444
BspPI GGATC 1 cut(s) 280
BspQI GCTCTTC 2 cut(s) 24, 96
BsrDI GCAATG 1 cut(s) 275
BsrI ACTGG 2 cut(s) 26, 80
BssMI GATC 3 cut(s) 285, 313, 405
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 2 cut(s) 24, 96
BstC8I GCNNGC 1 cut(s) 211
BstKTI GATC 3 cut(s) 288, 316, 408
BstMBI GATC 3 cut(s) 285, 313, 405
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 353
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 3 cut(s) 19, 183, 309
BveI ACCTGC 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 211
Csp6I GTAC 2 cut(s) 72, 225
CviAII CATG 1 cut(s) 350
CviJI RGCY 8 cut(s) 67, 89, 152, 182, 209, 260, 323, 440
CviKI_1 RGCY 8 cut(s) 67, 89, 152, 182, 209, 260, 323, 440
CviQI GTAC 2 cut(s) 72, 225
DpnI GATC 3 cut(s) 287, 315, 407
DpnII GATC 3 cut(s) 285, 313, 405
Eam1104I CTCTTC 2 cut(s) 24, 96
EarI CTCTTC 2 cut(s) 24, 96
EcoT22I ATGCAT 1 cut(s) 366
FaeI CATG 1 cut(s) 353
FaiI YATR 6 cut(s) 229, 231, 246, 351, 366, 414
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 145
FatI CATG 1 cut(s) 349
FauNDI CATATG 1 cut(s) 229
FbaI TGATCA 2 cut(s) 313, 405
FspBI CTAG 1 cut(s) 132
Hin1II CATG 1 cut(s) 353
HindIII AAGCTT 1 cut(s) 65
HphI GGTGA 2 cut(s) 38, 388
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 4 cut(s) 285, 336, 345, 371
Hpy188III TCNNGA 2 cut(s) 95, 420
Hpy8I GTNNAC 1 cut(s) 309
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 380
HpyCH4V TGCA 5 cut(s) 50, 248, 353, 364, 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpySE526I ACGT 1 cut(s) 380
Hsp92II CATG 1 cut(s) 353
Ksp22I TGATCA 2 cut(s) 313, 405
Kzo9I GATC 3 cut(s) 285, 313, 405
LguI GCTCTTC 2 cut(s) 24, 96
LmnI GCTCC 1 cut(s) 274
LpnPI CCDG 5 cut(s) 7, 93, 108, 305, 439
LweI GCATC 3 cut(s) 118, 351, 433
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 380
MaeIII GTNAC 1 cut(s) 376
MalI GATC 3 cut(s) 287, 315, 407
MboI GATC 3 cut(s) 285, 313, 405
MboII GAAGA 3 cut(s) 16, 41, 83
MluCI AATT 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 3 cut(s) 109, 165, 287
Mph1103I ATGCAT 1 cut(s) 366
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 24
MwoI GCNNNNNNNGC 1 cut(s) 274
NdeI CATATG 1 cut(s) 229
NdeII GATC 3 cut(s) 285, 313, 405
NlaIII CATG 1 cut(s) 353
NmuCI GTSAC 1 cut(s) 376
NsiI ATGCAT 1 cut(s) 366
NspI RCATGY 1 cut(s) 353
OliI CACNNNNGTG 1 cut(s) 24
PaqCI CACCTGC 1 cut(s) 444
PciSI GCTCTTC 2 cut(s) 24, 96
RsaI GTAC 2 cut(s) 73, 226
RsaNI GTAC 2 cut(s) 72, 225
RseI CAYNNNNRTG 1 cut(s) 24
SapI GCTCTTC 2 cut(s) 24, 96
SaqAI TTAA 1 cut(s) 263
Sau3AI GATC 3 cut(s) 285, 313, 405
SetI ASST 7 cut(s) 69, 120, 211, 262, 383, 438, 458
SfaNI GCATC 3 cut(s) 118, 351, 433
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 1 cut(s) 392
SsiI CCGC 1 cut(s) 75
SspMI CTAG 1 cut(s) 132
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 383
TaqI TCGA 2 cut(s) 114, 120
TasI AATT 1 cut(s) 392
TatI WGTACW 1 cut(s) 224
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 3 cut(s) 26, 183, 316
TseFI GTSAC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 376
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 3 cut(s) 26, 183, 316
XapI RAATTY 1 cut(s) 392
XceI RCATGY 1 cut(s) 353
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.