FvH4_1g29732

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
23169253 .. 23169781
529 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29732.t1

Sequence Viewer

Length: 315 bp
ATGGGATCCGGCAAGAGTTGGTCGTCGATCAAGCGTGGCCCTTTCGGTCTTATCAGCGGTGATCGTTCTGGATCAGTGGAGCTAGGGACGGTGAGGCAATCGGATGGCGGCAGCTTTGGTGGCAAGGAGGCGGATCTGCGCCCAAATGCCCTTCTCCTTTTTAGGCCAGGTTCTTGGTGGTTACCTTTCAATTCCAATGGTGTGGGGTTAGGTAATAATCTTATCCTAACTCCTAAGACTGACACCGAGGACGGCTATGAACCTATACATAACCGTGGATTGGCTACATTACTTGAAGAAGCTGATCAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.12

Weight (kDa)

5.26

Isoelectric Point (pI)

39.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 57, 108, 131
AclWI GGATC 3 cut(s) 13, 79, 141
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 2 cut(s) 190, 296
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 3 cut(s) 82, 114, 302
AluI AGCT 3 cut(s) 82, 114, 302
AlwI GGATC 3 cut(s) 13, 79, 141
AoxI GGCC 2 cut(s) 37, 164
ApeKI GCWGC 1 cut(s) 111
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 38
AsuHPI GGTGA 2 cut(s) 71, 103
BamHI GGATCC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 123
BccI CCATC 1 cut(s) 98
BceAI ACGGC 1 cut(s) 268
BciT130I CCWGG 1 cut(s) 168
BclI TGATCA 1 cut(s) 304
BfaI CTAG 1 cut(s) 83
BisI GCNGC 2 cut(s) 109, 112
BlsI GCNGC 2 cut(s) 110, 113
Bme1390I CCNGG 1 cut(s) 168
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 246, 274
Bsc4I CCNNNNNNNGG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 168
BseDI CCNNGG 2 cut(s) 246, 274
BseGI GGATG 1 cut(s) 109
BseLI CCNNNNNNNGG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 123
BshFI GGCC 2 cut(s) 39, 166
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 100
BslI CCNNNNNNNGG 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 2 cut(s) 39, 166
Bsp143I GATC 6 cut(s) 5, 27, 61, 71, 133, 304
BspACI CCGC 3 cut(s) 57, 108, 131
BspANI GGCC 2 cut(s) 39, 166
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 3 cut(s) 13, 79, 141
BssECI CCNNGG 2 cut(s) 246, 274
BssMI GATC 6 cut(s) 5, 27, 61, 71, 133, 304
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 91, 275
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 274
BstEII GGTNACC 1 cut(s) 180
BstF5I GGATG 1 cut(s) 109
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 6 cut(s) 8, 30, 64, 74, 136, 307
BstMBI GATC 6 cut(s) 5, 27, 61, 71, 133, 304
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 168
BstPI GGTNACC 1 cut(s) 180
BstSCI CCNGG 1 cut(s) 166
BstV1I GCAGC 1 cut(s) 123
BstX2I RGATCY 2 cut(s) 5, 133
BstXI CCANNNNNNTGG 2 cut(s) 174, 202
BstYI RGATCY 2 cut(s) 5, 133
BsuRI GGCC 2 cut(s) 39, 166
BtgI CCRYGG 1 cut(s) 274
BtsCI GGATG 1 cut(s) 109
BtsIMutI CAGTG 1 cut(s) 81
CfoI GCGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 38
CviJI RGCY 7 cut(s) 39, 82, 114, 166, 255, 284, 302
CviKI_1 RGCY 7 cut(s) 39, 82, 114, 166, 255, 284, 302
DdeI CTNAG 1 cut(s) 234
DpnI GATC 6 cut(s) 7, 29, 63, 73, 135, 306
DpnII GATC 6 cut(s) 5, 27, 61, 71, 133, 304
EciI GGCGGA 1 cut(s) 146
Eco91I GGTNACC 1 cut(s) 180
EcoO65I GGTNACC 1 cut(s) 180
EcoRII CCWGG 1 cut(s) 166
FaiI YATR 3 cut(s) 258, 266, 270
FaqI GGGAC 1 cut(s) 100
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 109, 112
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 2 cut(s) 109, 112
FspBI CTAG 1 cut(s) 83
GlaI GCGC 1 cut(s) 140
GluI GCNGC 2 cut(s) 109, 112
HaeIII GGCC 2 cut(s) 39, 166
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 141
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HpaII CCGG 1 cut(s) 9
HphI GGTGA 2 cut(s) 71, 103
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 1 cut(s) 69
Hpy99I CGWCG 1 cut(s) 28
HpyAV CCTTC 1 cut(s) 161
HpyCH4III ACNGT 2 cut(s) 91, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 234
HspAI GCGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 6 cut(s) 5, 27, 61, 71, 133, 304
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 22, 54, 153, 180
Lsp1109I GCAGC 1 cut(s) 123
MaeI CTAG 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 180
MalI GATC 6 cut(s) 7, 29, 63, 73, 135, 306
MboI GATC 6 cut(s) 5, 27, 61, 71, 133, 304
MboII GAAGA 1 cut(s) 308
MflI RGATCY 2 cut(s) 5, 133
MluCI AATT 1 cut(s) 190
MnlI CCTC 3 cut(s) 87, 121, 241
MseI TTAA 1 cut(s) 313
MslI CAYNNNNRTG 1 cut(s) 273
MspA1I CMGCKG 1 cut(s) 57
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 6 cut(s) 5, 27, 61, 71, 133, 304
NlaIV GGNNCC 1 cut(s) 7
PkrI GCNGC 2 cut(s) 110, 113
Psp6I CCWGG 1 cut(s) 166
PspEI GGTNACC 1 cut(s) 180
PspGI CCWGG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 2 cut(s) 5, 133
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 2 cut(s) 109, 112
Sau3AI GATC 6 cut(s) 5, 27, 61, 71, 133, 304
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 168
SetI ASST 7 cut(s) 84, 116, 172, 187, 214, 265, 304
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 1 cut(s) 190
SsiI CCGC 3 cut(s) 57, 108, 131
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 166
TaaI ACNGT 2 cut(s) 91, 275
TaqI TCGA 1 cut(s) 26
TaqII GACCGA 1 cut(s) 35
TasI AATT 1 cut(s) 190
TauI GCSGC 1 cut(s) 111
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 1 cut(s) 81
TseI GCWGC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 273
TspRI CASTG 1 cut(s) 81
XcmI CCANNNNNNNNNTGG 1 cut(s) 174
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.