Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007480

Physical Location & Seq

Genomic Coordinates Forward (+)

9475523 .. 9477123

Gene Structure 1601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15231.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAGGAGTTGAAGTCACAGTTTGTAGATTTGTTTCAAGAATTGCCGGGTTTGCCGCCGAAGAGGAAAGTGGAACATGAGATTATGTTGACAGGGGAGAGTTCTTTGCCAAACACAGGGTTGTATCCACCTTTGCACGGGCTGACAAAAGCTGGACAGAAATTTGAGTGGAGTGAAAAGCATGAAGAAGCTTTCCAGCTTTTAAAGAGGAAAATTTCAGAAGCTCCAGTACTAGCCTTGCCGAGTCTGCAACGCCCTTTTGAGGTGGAGACTGACGCGTCTACCTATGCTATGGGAGCCGTTCTGTTACAAGATGGGAAGCCAGTAGAATACTACTCTGAGTTATTCACTGGATCCATCAGAAACTATCCAACCTATGACAAGGAGTTTTATGCACTTTACCAAGCCATCAAGCATTGGAGGGTGTACTTGTTAGGGAAGGAGGTAGTAGTACATTCAGATCACAAGCCATTGGAATATCTTCATGCTCAAACCAAGCTCCAACAAGCCAGGCACATGAAGTGGATGTCATATTTAATGACTTTTGACATAGTCATCCGATACAAGAAGGGGATCATCAACAAGTTGGCTGATATGTTGTCAAGACCACCTGTGAGAGTTTGTGCCTTGGTAGTGGCTATGCGTATACAACCTTTGGTTCCAACTGAGTACGCAACTTTGTATGAATCAGATAAAGGGATCATTGTTATGCATACCGGAAGAGGGAGATCGATTACAGTGGATTCGAGAAGCACATACTTCAAGAGTGGCTGGACACTTTGGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

263

Amino Acids

30.24

Weight (kDa)

8.9

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	57 - 151	2.6e-31	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	84 - 182	4.2e-31	RNase H-like domain found in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007480)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20082 FvH4_1g29103 FvH4_1g29431 FvH4_1g29732 FvH4_1g29761 FvH4_2g03391 FvH4_2g05501 FvH4_2g12792 FvH4_2g19253 FvH4_3g31261 FvH4_4g12741 FvH4_4g33447 FvH4_5g39021 FvH4_6g15231 FvH4_6g15232 FvH4_7g32351
malus_domestica	MD07G1221100.v1.1
prunus_persica	Prupe.8G084500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097291 RchiOBHm_Chr3g0497281 RchiOBHm_Chr5g0015161 RchiOBHm_Chr7g0243211 RchiOBHm_Chr7g0243231
rosa_roxburghii	Rroxscaffold_7G00175870
rosa_wichuraiana	Rw4G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	277
AccI	GTMKAC	2 cut(s)	281, 646
AccII	CGCG	1 cut(s)	278
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	4 cut(s)	348, 361, 581, 707
AcsI	RAATTY	2 cut(s)	161, 213
AfaI	GTAC	4 cut(s)	231, 428, 453, 671
AfiI	CCNNNNNNNGG	4 cut(s)	116, 137, 262, 723
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	3 cut(s)	13, 38, 763
AjnI	CCWGG	1 cut(s)	509
AluBI	AGCT	5 cut(s)	152, 191, 199, 224, 499
AluI	AGCT	5 cut(s)	152, 191, 199, 224, 499
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	4 cut(s)	348, 361, 581, 707
ApoI	RAATTY	2 cut(s)	161, 213
Asp700I	GAANNNNTTC	1 cut(s)	480
AsuC2I	CCSGG	1 cut(s)	48
BamHI	GGATCC	1 cut(s)	353
BarI	GAAGNNNNNNTAC	2 cut(s)	213, 245
BccI	CCATC	3 cut(s)	308, 365, 416
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	511
BciVI	GTATCC	1 cut(s)	135
BcnI	CCSGG	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
BmcAI	AGTACT	1 cut(s)	231
Bme1390I	CCNGG	2 cut(s)	48, 511
BmiI	GGNNCC	3 cut(s)	298, 355, 660
BmrFI	CCNGG	2 cut(s)	48, 511
BpmI	CTGGAG	1 cut(s)	210
BpuMI	CCSGG	1 cut(s)	48
Bsa29I	ATCGAT	1 cut(s)	731
BsaJI	CCNNGG	1 cut(s)	627
BsaWI	WCCGGW	1 cut(s)	716
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 137, 262, 723
Bse1I	ACTGG	3 cut(s)	227, 323, 355
BseBI	CCWGG	1 cut(s)	511
BseCI	ATCGAT	1 cut(s)	731
BseDI	CCNNGG	1 cut(s)	627
BseGI	GGATG	2 cut(s)	531, 555
BseLI	CCNNNNNNNGG	4 cut(s)	116, 137, 262, 723
BseMII	CTCAG	2 cut(s)	330, 657
BseNI	ACTGG	3 cut(s)	227, 323, 355
BseRI	GAGGAG	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	731
BsiSI	CCGG	2 cut(s)	47, 717
BslI	CCNNNNNNNGG	4 cut(s)	116, 137, 262, 723
BsmAI	GTCTC	1 cut(s)	263
Bsp143I	GATC	5 cut(s)	353, 460, 573, 699, 728
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	2 cut(s)	331, 658
BspDI	ATCGAT	1 cut(s)	731
BspFNI	CGCG	1 cut(s)	278
BspLI	GGNNCC	3 cut(s)	298, 355, 660
BspPI	GGATC	4 cut(s)	348, 361, 581, 707
BsrI	ACTGG	3 cut(s)	227, 323, 355
BssECI	CCNNGG	1 cut(s)	627
BssMI	GATC	5 cut(s)	353, 460, 573, 699, 728
BssNAI	GTATAC	1 cut(s)	647
BssT1I	CCWWGG	1 cut(s)	627
Bst1107I	GTATAC	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	511
Bst4CI	ACNGT	2 cut(s)	21, 739
Bst6I	CTCTTC	2 cut(s)	56, 715
BstDEI	CTNAG	2 cut(s)	339, 666
BstF5I	GGATG	2 cut(s)	531, 555
BstFNI	CGCG	1 cut(s)	278
BstKTI	GATC	5 cut(s)	356, 463, 576, 702, 731
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	5 cut(s)	353, 460, 573, 699, 728
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 247, 296
BstNI	CCWGG	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	46, 509
BstUI	CGCG	1 cut(s)	278
BstX2I	RGATCY	1 cut(s)	353
BstYI	RGATCY	1 cut(s)	353
BstZ17I	GTATAC	1 cut(s)	647
Bsu15I	ATCGAT	1 cut(s)	731
BsuI	GTATCC	1 cut(s)	135
BsuTUI	ATCGAT	1 cut(s)	731
BtsCI	GGATG	2 cut(s)	531, 555
BtsIMutI	CAGTG	2 cut(s)	348, 744
ClaI	ATCGAT	1 cut(s)	731
CseI	GACGC	2 cut(s)	267, 284
Csp6I	GTAC	4 cut(s)	230, 427, 452, 670
CviAII	CATG	4 cut(s)	77, 182, 485, 517
CviQI	GTAC	4 cut(s)	230, 427, 452, 670
DdeI	CTNAG	2 cut(s)	339, 666
DpnI	GATC	5 cut(s)	355, 462, 575, 701, 730
DpnII	GATC	5 cut(s)	353, 460, 573, 699, 728
DraI	TTTAAA	1 cut(s)	204
DrdI	GACNNNNNNGTC	1 cut(s)	277
DseDI	GACNNNNNNGTC	1 cut(s)	277
Eam1104I	CTCTTC	2 cut(s)	56, 715
EarI	CTCTTC	2 cut(s)	56, 715
Eco130I	CCWWGG	1 cut(s)	627
EcoRII	CCWGG	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	627
EcoT22I	ATGCAT	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	627
FaeI	CATG	4 cut(s)	80, 185, 488, 520
FatI	CATG	4 cut(s)	76, 181, 484, 516
FblI	GTMKAC	2 cut(s)	281, 646
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	2 cut(s)	538, 542
Fsp4HI	GCNGC	1 cut(s)	56
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	1 cut(s)	56
GsuI	CTGGAG	1 cut(s)	210
HapII	CCGG	2 cut(s)	47, 717
HgaI	GACGC	2 cut(s)	267, 284
Hin1II	CATG	4 cut(s)	80, 185, 488, 520
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	189
HinfI	GANTC	3 cut(s)	244, 686, 743
HpaII	CCGG	2 cut(s)	47, 717
Hpy166II	GTNNAC	4 cut(s)	90, 282, 427, 647
Hpy188I	TCNGA	6 cut(s)	220, 340, 362, 460, 560, 691
Hpy188III	TCNNGA	4 cut(s)	38, 603, 747, 763
Hpy8I	GTNNAC	4 cut(s)	90, 282, 427, 647
HpyAV	CCTTC	2 cut(s)	433, 562
HpyCH4III	ACNGT	2 cut(s)	21, 739
HpyCH4V	TGCA	4 cut(s)	136, 250, 395, 712
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 247, 296
HpyF3I	CTNAG	2 cut(s)	339, 666
Hsp92II	CATG	4 cut(s)	80, 185, 488, 520
Kzo9I	GATC	5 cut(s)	353, 460, 573, 699, 728
LmnI	GCTCC	3 cut(s)	229, 296, 504
MaeI	CTAG	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	15, 306
MalI	GATC	5 cut(s)	355, 462, 575, 701, 730
MboI	GATC	5 cut(s)	353, 460, 573, 699, 728
MboII	GAAGA	4 cut(s)	73, 197, 473, 732
MflI	RGATCY	1 cut(s)	353
MluCI	AATT	3 cut(s)	41, 161, 213
MluI	ACGCGT	1 cut(s)	276
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	3 cut(s)	395, 526, 686
MnlI	CCTC	6 cut(s)	57, 201, 256, 414, 436, 716
Mph1103I	ATGCAT	1 cut(s)	714
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	3 cut(s)	203, 536, 787
MslI	CAYNNNNRTG	1 cut(s)	707
MspI	CCGG	2 cut(s)	47, 717
MspR9I	CCNGG	2 cut(s)	48, 511
MvaI	CCWGG	1 cut(s)	511
MvnI	CGCG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	52, 247, 296
NciI	CCSGG	1 cut(s)	48
NdeII	GATC	5 cut(s)	353, 460, 573, 699, 728
NlaIII	CATG	4 cut(s)	80, 185, 488, 520
NlaIV	GGNNCC	3 cut(s)	298, 355, 660
NmeAIII	GCCGAG	1 cut(s)	267
NmuCI	GTSAC	1 cut(s)	15
NsiI	ATGCAT	1 cut(s)	714
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	686, 743
PflFI	GACNNNGTC	1 cut(s)	551
PkrI	GCNGC	1 cut(s)	57
PleI	GAGTC	1 cut(s)	252
PpsI	GAGTC	1 cut(s)	252
Psp6I	CCWGG	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	509
PspN4I	GGNNCC	3 cut(s)	298, 355, 660
PsuI	RGATCY	1 cut(s)	353
PsyI	GACNNNGTC	1 cut(s)	551
RsaI	GTAC	4 cut(s)	231, 428, 453, 671
RsaNI	GTAC	4 cut(s)	230, 427, 452, 670
RseI	CAYNNNNRTG	1 cut(s)	707
SaqAI	TTAA	3 cut(s)	203, 536, 787
SatI	GCNGC	1 cut(s)	56
Sau3AI	GATC	5 cut(s)	353, 460, 573, 699, 728
ScaI	AGTACT	1 cut(s)	231
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	48, 511
SmiMI	CAYNNNNRTG	1 cut(s)	707
Sse9I	AATT	3 cut(s)	41, 161, 213
SsiI	CCGC	1 cut(s)	56
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	2 cut(s)	46, 509
StyI	CCWWGG	1 cut(s)	627
TaaI	ACNGT	2 cut(s)	21, 739
TaqI	TCGA	2 cut(s)	731, 746
TasI	AATT	3 cut(s)	41, 161, 213
TatI	WGTACW	3 cut(s)	229, 426, 451
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	2 cut(s)	686, 743
Tru1I	TTAA	3 cut(s)	203, 536, 787
Tru9I	TTAA	3 cut(s)	203, 536, 787
TscAI	CASTG	2 cut(s)	355, 744
TseFI	GTSAC	1 cut(s)	15
Tsp45I	GTSAC	1 cut(s)	15
TspDTI	ATGAA	4 cut(s)	198, 473, 533, 699
TspRI	CASTG	2 cut(s)	355, 744
Tth111I	GACNNNGTC	1 cut(s)	551
XapI	RAATTY	2 cut(s)	161, 213
XmiI	GTMKAC	2 cut(s)	281, 646
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	1 cut(s)	233
ZrmI	AGTACT	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.