Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0007480

Physical Location & Seq

Genomic Coordinates Reverse (-)

29840019 .. 29844327

Gene Structure 4309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1221100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2094 bp

ATGACAAGTTTGTGCCTTTTATCAAGTACTTGCTCAGGAAATTCATGTAGTAGCCTGTACACCGGGACTCCCGGGTATCCTTCCACTTCTGCTCCAAACCGCAGTAATCCAAGCTCCAAATATGGCATCACTGGTCCACCTGCTCCCACGGTACCTGCCACAGAGAAGGGACCAGCCCTATCCACGGCTACTCACCTCGAATGCTATCGTTGCCATGCTAAGGGCCACATCGCCTCCCGTTGCCCCCACAGAACTTTAAATATTAGCTCCAACACTGAGGACCCTCGTGTGGACGAGTATGTGGAGCCCCTTGAACCTATTTATGATCCCGACCTTGATAATTGTTGTGAGGAAGAAGCATTGCAACAACTGAGTGTTATGCGTTGTATTTATTCAGCATCTACACCTCCACCTCCTGATTCATGGAAACGCACAAGTATCTTCCAGACTTATGTCCCTTGCGGTACCACTCGATGCCAGCTAGTTATTGATGGGGGAAGTACGCTGAATGTTATTTCTAAAGCTGCCGTCGATCGTCTTCATCTTCAGGCCGAACCACATCCCCATCCTTTTCAAGTCGGCTGGGTAGATAAAACTAGGTTACCTGTTACTGAAAGATGTCTTGTTCCTCTTCAATTGGGTCCCTGTCACGAGAAACTTTATTGTGATATCCTACCTATGAGTGTTGCACATGTGCTACTAGGCCGGCCTTGGCTTTATGACCGTAACGTCAAAAGTTGCGGCCGAGAGAACACCTATACTTTCCAACATGAAGGGAAAAACATAACACTCAAGCCTTCCAACCCAGCCATCAAACCAATTAAGGAGGTTCAACCGACACTGCCCTTAAACGGGAAGGCTTCGGAGCATCGTTTAAGTATCTTATCACCTGTAGATTTTACACATGAACTACAAGACACGGGTGTGGTCTTTGCTCTCTTGCTTAAACCGGTCTCTAAATGTACCCCCACTCCATTTGCCGAACCCATACGGCAGCTACTCACGGAATTCTGTGATGTTATACCTGAGGACTTACCAGATGAACTACCTCCAGCACGAGAGATTCAGCATGCCATCGACCTTCCACTCTCGAGAAGAACATCTCAAACATCTTCACACTCGCTCTTCTTTACATTACGAGCGGAAAAACTGTATGCTAACTTACCCAAATGTTCGTTTCTTCAACCGCAAGTTCTATTTTTGGGGTTCAATATTTCTGCAGCTGGGGTTAGCACCGATCCCACTAAAGTGGAGGCTATTATTACTCGTTGGCCAACACCTACGACATTAACAGAGGCACGCAGCTTTCATGGTCTCGCCTCTTTTTATCGCCGATTCATTCCCGGGTTCAGTACTATTATGGCACCAATAACTGATTGCATGAAACAAGGAGCGTTTCTTTGGACCCCTGCAGCTGCCACGGCCTTTACAATTTTGAAGCAAAAGATGAGTCAAGCACCTGTTCTTCGACATCCTGATTTGACTAAAGTCTTTGAAGTGGCATGCGACGCTTCCGGAGTCGGAATTGGTGGCGTGCTTAGCCAAGAAGGACATCCAGTAGCCTACTTTAGTGAGAAACTTAATGCAGCAAAGCAACGTTATTCTACTTATGACAAGGAGTTTTATGCTGTGGTACAGGCCCTTCGGTATTGGCAATATTACCTATTGCCAAACGAATTTGTGCTATATTCCGATCATCAAGCTTTGAAATATCTCCACTCTCAACGCACCATCAGCAGTCGACATGTCAAGTGGTCTGAATATCTACAGATCTTTACGTTTGTTTTACGACACCGTCCAGGCATTGACAATAAGGCAGCTGATGCCCTTAGTCGCGTGGCTACTATTTTGCACACAATGACAGTTGAGGTCACTGGGTTTGATCGTATTAAGGCCGAGTATTCGTCGTGTCCAGATTTTGGAATTATTTTCCATGAAGTTTCCAACGGTAACCGTCGTGAGTATGTGGACTTTATTACAAGGGATGGGTTCTTGTTTCGGAAAACCCAATTATGCATTCCTCGTACTTCTCTTCGTGAATTCCTTATTTGGGAACTACATGGTGGTGGTTTGGCTGGACATTTTGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Chromo RVT_1 Retrotrans_gag rve zf-H2C2

Protein Analysis

698

Amino Acids

77.86

Weight (kDa)

8.12

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RT_RNaseH_2	PF17919	468 - 561	6e-30	RNase H-like domain found in reverse transcriptase
RT_RNaseH	PF17917	493 - 591	4.8e-31	RNase H-like domain found in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007480)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20082 FvH4_1g29103 FvH4_1g29431 FvH4_1g29732 FvH4_1g29761 FvH4_2g03391 FvH4_2g05501 FvH4_2g12792 FvH4_2g19253 FvH4_3g31261 FvH4_4g12741 FvH4_4g33447 FvH4_5g39021 FvH4_6g15231 FvH4_6g15232 FvH4_7g32351
malus_domestica	MD07G1221100.v1.1
prunus_persica	Prupe.8G084500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0097291 RchiOBHm_Chr3g0497281 RchiOBHm_Chr5g0015161 RchiOBHm_Chr7g0243211 RchiOBHm_Chr7g0243231
rosa_roxburghii	Rroxscaffold_7G00175870
rosa_wichuraiana	Rw4G015470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	148
AasI	GACNNNNNNGTC	1 cut(s)	728
Acc36I	ACCTGC	2 cut(s)	148, 163
Acc65I	GGTACC	2 cut(s)	151, 464
AccB1I	GGYRCC	3 cut(s)	151, 464, 1363
AccB7I	CCANNNNNTGG	1 cut(s)	1919
AccBSI	CCGCTC	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	1741
AccII	CGCG	1 cut(s)	1836
AccIII	TCCGGA	1 cut(s)	1514
AciI	CCGC	5 cut(s)	100, 462, 741, 1142, 1187
AclI	AACGTT	1 cut(s)	1597
AclWI	GGATC	2 cut(s)	320, 1232
AcoI	YGGCCR	2 cut(s)	742, 1271
AcsI	RAATTY	4 cut(s)	40, 1007, 1676, 2039
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	9 cut(s)	28, 59, 153, 466, 502, 964, 1354, 1635, 2026
AfiI	CCNNNNNNNGG	7 cut(s)	184, 220, 289, 851, 852, 1919, 2050
AflIII	ACRYGT	2 cut(s)	691, 1744
AgeI	ACCGGT	1 cut(s)	949
AgsI	TTSAA	9 cut(s)	314, 575, 635, 833, 1184, 1210, 1438, 1496, 1708
AjnI	CCWGG	1 cut(s)	1798
AjuI	GAANNNNNNNTTGG	2 cut(s)	2001, 2033
AleI	CACNNNNGTG	2 cut(s)	923, 1247
Alw26I	GTCTC	2 cut(s)	958, 1319
AlwI	GGATC	2 cut(s)	320, 1232
Ama87I	CYCGRG	3 cut(s)	71, 1090, 1343
Aor13HI	TCCGGA	1 cut(s)	1514
AoxI	GGCC	9 cut(s)	223, 549, 703, 707, 742, 1271, 1422, 1638, 1893
ApeKI	GCWGC	8 cut(s)	524, 994, 1220, 1302, 1412, 1415, 1586, 1817
ApoI	RAATTY	4 cut(s)	40, 1007, 1676, 2039
ArsI	GACNNNNNNTTYG	2 cut(s)	1435, 1467
AsiGI	ACCGGT	1 cut(s)	949
Asp718I	GGTACC	2 cut(s)	151, 464
AspS9I	GGNCC	7 cut(s)	134, 170, 223, 280, 641, 1404, 1639
AsuC2I	CCSGG	5 cut(s)	64, 72, 73, 1344, 1345
AsuHPI	GGTGA	2 cut(s)	185, 879
AvaI	CYCGRG	3 cut(s)	71, 1090, 1343
AvaII	GGWCC	5 cut(s)	134, 170, 280, 641, 1404
AxyI	CCTNAGG	1 cut(s)	1026
BalI	TGGCCA	1 cut(s)	1273
BanI	GGYRCC	3 cut(s)	151, 464, 1363
BanII	GRGCYC	1 cut(s)	309
BarI	GAAGNNNNNNTAC	2 cut(s)	1626, 1658
BauI	CACGAG	3 cut(s)	285, 650, 1056
BbsI	GAAGAC	1 cut(s)	530
BbvI	GCAGC	8 cut(s)	511, 1006, 1232, 1314, 1402, 1424, 1598, 1829
BccI	CCATC	6 cut(s)	485, 573, 818, 1082, 1739, 1979
BceAI	ACGGC	4 cut(s)	201, 512, 1007, 1437
BciT130I	CCWGG	1 cut(s)	1800
BciVI	GTATCC	1 cut(s)	87
BcnI	CCSGG	5 cut(s)	64, 72, 73, 1344, 1345
BcoDI	GTCTC	2 cut(s)	958, 1319
BfaI	CTAG	3 cut(s)	482, 597, 701
BfmI	CTRYAG	4 cut(s)	891, 1218, 1410, 1766
BfuAI	ACCTGC	2 cut(s)	148, 163
BfuI	GTATCC	1 cut(s)	87
BglII	AGATCT	1 cut(s)	1770
BisI	GCNGC	9 cut(s)	525, 742, 995, 1221, 1303, 1413, 1416, 1587, 1818
BlpI	GCTNAGC	1 cut(s)	1538
BlsI	GCNGC	9 cut(s)	526, 743, 996, 1222, 1304, 1414, 1417, 1588, 1819
BmcAI	AGTACT	2 cut(s)	28, 1354
Bme1390I	CCNGG	6 cut(s)	64, 72, 73, 1344, 1345, 1800
Bme18I	GGWCC	5 cut(s)	134, 170, 280, 641, 1404
BmeT110I	CYCGRG	3 cut(s)	71, 1090, 1343
BmgT120I	GGNCC	7 cut(s)	134, 170, 223, 280, 641, 1404, 1639
BmiI	GGNNCC	9 cut(s)	153, 171, 282, 306, 466, 642, 643, 1365, 1406
BmrFI	CCNGG	6 cut(s)	64, 72, 73, 1344, 1345, 1800
BmrI	ACTGGG	1 cut(s)	1884
BmsI	GCATC	5 cut(s)	135, 407, 464, 877, 1813
BmuI	ACTGGG	1 cut(s)	1884
BoxI	GACNNNNGTC	2 cut(s)	452, 1487
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	1035
Bpu10I	CCTNAGC	2 cut(s)	34, 219
Bpu1102I	GCTNAGC	1 cut(s)	1538
BpuEI	CTTGAG	1 cut(s)	776
BpuMI	CCSGG	5 cut(s)	64, 72, 73, 1344, 1345
BsaI	GGTCTC	2 cut(s)	958, 1319
BsaJI	CCNNGG	6 cut(s)	71, 147, 183, 710, 1343, 1419
BsaWI	WCCGGW	2 cut(s)	949, 1514
BsaXI	ACNNNNNCTCC	8 cut(s)	52, 76, 82, 106, 218, 248, 955, 985
Bsc4I	CCNNNNNNNGG	7 cut(s)	184, 220, 289, 851, 852, 1919, 2050
Bse118I	RCCGGY	2 cut(s)	705, 949
Bse1I	ACTGG	3 cut(s)	136, 1556, 1879
Bse21I	CCTNAGG	1 cut(s)	1026
Bse3DI	GCAATG	1 cut(s)	359
BseAI	TCCGGA	1 cut(s)	1514
BseBI	CCWGG	1 cut(s)	1800
BseDI	CCNNGG	6 cut(s)	71, 147, 183, 710, 1343, 1419
BseGI	GGATG	5 cut(s)	559, 565, 1471, 1552, 1990
BseLI	CCNNNNNNNGG	7 cut(s)	184, 220, 289, 851, 852, 1919, 2050
BseMI	GCAATG	1 cut(s)	359
BseMII	CTCAG	4 cut(s)	48, 267, 362, 1017
BseNI	ACTGG	3 cut(s)	136, 1556, 1879
BseX3I	CGGCCG	1 cut(s)	742
BseXI	GCAGC	8 cut(s)	511, 1006, 1232, 1314, 1402, 1424, 1598, 1829
BseYI	CCCAGC	3 cut(s)	582, 805, 1223
Bsh1236I	CGCG	1 cut(s)	1836
Bsh1285I	CGRYCG	2 cut(s)	535, 745
BshFI	GGCC	9 cut(s)	225, 551, 705, 709, 744, 1273, 1424, 1640, 1895
BshNI	GGYRCC	3 cut(s)	151, 464, 1363
BshTI	ACCGGT	1 cut(s)	949
BsiEI	CGRYCG	2 cut(s)	535, 745
BsiHKCI	CYCGRG	3 cut(s)	71, 1090, 1343
BsiSI	CCGG	6 cut(s)	63, 72, 706, 950, 1344, 1515
BslFI	GGGAC	4 cut(s)	79, 183, 440, 627
BslI	CCNNNNNNNGG	7 cut(s)	184, 220, 289, 851, 852, 1919, 2050
BsmAI	GTCTC	2 cut(s)	958, 1319
BsmFI	GGGAC	4 cut(s)	79, 183, 440, 627
BsmI	GAATGC	2 cut(s)	206, 2016
BsnI	GGCC	9 cut(s)	225, 551, 705, 709, 744, 1273, 1424, 1640, 1895
Bso31I	GGTCTC	2 cut(s)	958, 1319
BsoBI	CYCGRG	3 cut(s)	71, 1090, 1343
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp13I	TCCGGA	1 cut(s)	1514
Bsp1407I	TGTACA	1 cut(s)	57
Bsp143I	GATC	6 cut(s)	325, 532, 1237, 1693, 1770, 1882
Bsp1720I	GCTNAGC	1 cut(s)	1538
BspACI	CCGC	5 cut(s)	100, 462, 741, 1142, 1187
BspANI	GGCC	9 cut(s)	225, 551, 705, 709, 744, 1273, 1424, 1640, 1895
BspCNI	CTCAG	4 cut(s)	47, 268, 363, 1018
BspEI	TCCGGA	1 cut(s)	1514
BspFNI	CGCG	1 cut(s)	1836
BspLI	GGNNCC	9 cut(s)	153, 171, 282, 306, 466, 642, 643, 1365, 1406
BspMAI	CTGCAG	2 cut(s)	1222, 1414
BspMI	ACCTGC	2 cut(s)	148, 163
BspPI	GGATC	2 cut(s)	320, 1232
BspQI	GCTCTTC	1 cut(s)	1130
BspT107I	GGYRCC	3 cut(s)	151, 464, 1363
BspTNI	GGTCTC	2 cut(s)	958, 1319
BsrBI	CCGCTC	1 cut(s)	1142
BsrDI	GCAATG	1 cut(s)	359
BsrFI	RCCGGY	2 cut(s)	705, 949
BsrGI	TGTACA	1 cut(s)	57
BsrI	ACTGG	3 cut(s)	136, 1556, 1879
BssAI	RCCGGY	2 cut(s)	705, 949
BssECI	CCNNGG	6 cut(s)	71, 147, 183, 710, 1343, 1419
BssMI	GATC	6 cut(s)	325, 532, 1237, 1693, 1770, 1882
BssSI	CACGAG	3 cut(s)	285, 650, 1056
BssT1I	CCWWGG	1 cut(s)	710
Bst2BI	CACGAG	3 cut(s)	285, 650, 1056
Bst2UI	CCWGG	1 cut(s)	1800
Bst4CI	ACNGT	7 cut(s)	151, 725, 1152, 1796, 1864, 1949, 1955
Bst6I	CTCTTC	3 cut(s)	636, 1130, 2037
BstAPI	GCANNNNNTGC	1 cut(s)	1823
BstAUI	TGTACA	1 cut(s)	57
BstC8I	GCNNGC	6 cut(s)	479, 707, 1071, 1300, 1504, 1535
BstDEI	CTNAG	7 cut(s)	34, 219, 276, 371, 1026, 1538, 1829
BstDSI	CCRYGG	3 cut(s)	147, 183, 1419
BstEII	GGTNACC	2 cut(s)	600, 1949
BstF5I	GGATG	5 cut(s)	559, 565, 1471, 1552, 1990
BstFNI	CGCG	1 cut(s)	1836
BstKTI	GATC	6 cut(s)	328, 535, 1240, 1696, 1773, 1885
BstMAI	GTCTC	2 cut(s)	958, 1319
BstMBI	GATC	6 cut(s)	325, 532, 1237, 1693, 1770, 1882
BstMCI	CGRYCG	2 cut(s)	535, 745
BstMWI	GCNNNNNNNGC	6 cut(s)	210, 1421, 1508, 1539, 1734, 1823
BstNI	CCWGG	1 cut(s)	1800
BstNSI	RCATGY	4 cut(s)	695, 1073, 1506, 1748
BstPAI	GACNNNNGTC	2 cut(s)	452, 1487
BstPI	GGTNACC	2 cut(s)	600, 1949
BstSCI	CCNGG	6 cut(s)	62, 70, 71, 1342, 1343, 1798
BstSFI	CTRYAG	4 cut(s)	891, 1218, 1410, 1766
BstUI	CGCG	1 cut(s)	1836
BstV1I	GCAGC	8 cut(s)	511, 1006, 1232, 1314, 1402, 1424, 1598, 1829
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	1770
BstXI	CCANNNNNNTGG	1 cut(s)	1249
BstYI	RGATCY	1 cut(s)	1770
BstZI	CGGCCG	1 cut(s)	742
Bsu36I	CCTNAGG	1 cut(s)	1026
BsuI	GTATCC	1 cut(s)	87
BsuRI	GGCC	9 cut(s)	225, 551, 705, 709, 744, 1273, 1424, 1640, 1895
BtgI	CCRYGG	3 cut(s)	147, 183, 1419
BtgZI	GCGATG	1 cut(s)	214
BtsCI	GGATG	5 cut(s)	559, 565, 1471, 1552, 1990
BtsI	GCAGTG	1 cut(s)	839
BtsIMutI	CAGTG	4 cut(s)	129, 273, 839, 1872
BveI	ACCTGC	2 cut(s)	148, 163
Cac8I	GCNNGC	6 cut(s)	479, 707, 1071, 1300, 1504, 1535
Cfr10I	RCCGGY	2 cut(s)	705, 949
Cfr13I	GGNCC	7 cut(s)	134, 170, 223, 280, 641, 1404, 1639
Cfr9I	CCCGGG	2 cut(s)	71, 1343
CseI	GACGC	1 cut(s)	1517
Csp6I	GTAC	9 cut(s)	27, 58, 152, 465, 501, 963, 1353, 1634, 2025
CspAI	ACCGGT	1 cut(s)	949
CspCI	CAANNNNNGTGG	2 cut(s)	958, 993
CviQI	GTAC	9 cut(s)	27, 58, 152, 465, 501, 963, 1353, 1634, 2025
DdeI	CTNAG	7 cut(s)	34, 219, 276, 371, 1026, 1538, 1829
DpnI	GATC	6 cut(s)	327, 534, 1239, 1695, 1772, 1884
DpnII	GATC	6 cut(s)	325, 532, 1237, 1693, 1770, 1882
DraI	TTTAAA	1 cut(s)	258
DrdI	GACNNNNNNGTC	1 cut(s)	728
DseDI	GACNNNNNNGTC	1 cut(s)	728
EaeI	YGGCCR	2 cut(s)	742, 1271
EagI	CGGCCG	1 cut(s)	742
Eam1104I	CTCTTC	3 cut(s)	636, 1130, 2037
EarI	CTCTTC	3 cut(s)	636, 1130, 2037
EclXI	CGGCCG	1 cut(s)	742
Eco130I	CCWWGG	1 cut(s)	710
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	2 cut(s)	958, 1319
Eco32I	GATATC	1 cut(s)	670
Eco47I	GGWCC	5 cut(s)	134, 170, 280, 641, 1404
Eco52I	CGGCCG	1 cut(s)	742
Eco57I	CTGAAG	1 cut(s)	530
Eco81I	CCTNAGG	1 cut(s)	1026
Eco88I	CYCGRG	3 cut(s)	71, 1090, 1343
Eco91I	GGTNACC	2 cut(s)	600, 1949
EcoO109I	RGGNCCY	3 cut(s)	280, 641, 1639
EcoO65I	GGTNACC	2 cut(s)	600, 1949
EcoRI	GAATTC	2 cut(s)	1007, 2039
EcoRII	CCWGG	1 cut(s)	1798
EcoRV	GATATC	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	710
EcoT22I	ATGCAT	1 cut(s)	2018
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	710
FaqI	GGGAC	4 cut(s)	79, 183, 440, 627
FblI	GTMKAC	1 cut(s)	1741
Fnu4HI	GCNGC	9 cut(s)	525, 742, 995, 1221, 1303, 1413, 1416, 1587, 1818
FokI	GGATG	5 cut(s)	546, 552, 1458, 1539, 1997
FriOI	GRGCYC	1 cut(s)	309
FseI	GGCCGGCC	1 cut(s)	709
Fsp4HI	GCNGC	9 cut(s)	525, 742, 995, 1221, 1303, 1413, 1416, 1587, 1818
FspBI	CTAG	3 cut(s)	482, 597, 701
GluI	GCNGC	9 cut(s)	525, 742, 995, 1221, 1303, 1413, 1416, 1587, 1818
GsaI	CCCAGC	3 cut(s)	586, 809, 1227
GsuI	CTGGAG	1 cut(s)	1035
HaeIII	GGCC	9 cut(s)	225, 551, 705, 709, 744, 1273, 1424, 1640, 1895
HapII	CCGG	6 cut(s)	63, 72, 706, 950, 1344, 1515
HgaI	GACGC	1 cut(s)	1517
HincII	GTYRAC	1 cut(s)	1742
HindII	GTYRAC	1 cut(s)	1742
HindIII	AAGCTT	1 cut(s)	1701
HinfI	GANTC	6 cut(s)	67, 419, 1063, 1335, 1450, 1518
HpaII	CCGG	6 cut(s)	63, 72, 706, 950, 1344, 1515
HphI	GGTGA	2 cut(s)	185, 879
Hpy166II	GTNNAC	5 cut(s)	60, 137, 292, 1742, 1969
Hpy188I	TCNGA	5 cut(s)	865, 1523, 1693, 1759, 2001
Hpy8I	GTNNAC	5 cut(s)	60, 137, 292, 1742, 1969
Hpy99I	CGWCG	4 cut(s)	533, 1511, 1909, 1959
HpyAV	CCTTC	8 cut(s)	90, 160, 767, 807, 850, 1091, 1541, 1652
HpyCH4III	ACNGT	7 cut(s)	151, 725, 1152, 1796, 1864, 1949, 1955
HpyCH4IV	ACGT	3 cut(s)	729, 1597, 1778
HpyCH4V	TGCA	8 cut(s)	364, 689, 1220, 1380, 1412, 1586, 1852, 2016
HpyF10VI	GCNNNNNNNGC	6 cut(s)	210, 1421, 1508, 1539, 1734, 1823
HpyF3I	CTNAG	7 cut(s)	34, 219, 276, 371, 1026, 1538, 1829
HpySE526I	ACGT	3 cut(s)	729, 1597, 1778
KflI	GGGWCCC	1 cut(s)	641
Kpn2I	TCCGGA	1 cut(s)	1514
KpnI	GGTACC	2 cut(s)	155, 468
KroI	GCCGGC	1 cut(s)	705
KroNI	GCCGGC	1 cut(s)	707
Kzo9I	GATC	6 cut(s)	325, 532, 1237, 1693, 1770, 1882
LguI	GCTCTTC	1 cut(s)	1130
LmnI	GCTCC	7 cut(s)	97, 119, 148, 272, 304, 865, 1391
Lsp1109I	GCAGC	8 cut(s)	511, 1006, 1232, 1314, 1402, 1424, 1598, 1829
LweI	GCATC	5 cut(s)	135, 407, 464, 877, 1813
MaeI	CTAG	3 cut(s)	482, 597, 701
MaeII	ACGT	3 cut(s)	729, 1597, 1778
MaeIII	GTNAC	6 cut(s)	600, 607, 647, 725, 1870, 1949
MalI	GATC	6 cut(s)	327, 534, 1239, 1695, 1772, 1884
MbiI	CCGCTC	1 cut(s)	1142
MboI	GATC	6 cut(s)	325, 532, 1237, 1693, 1770, 1882
MfeI	CAATTG	1 cut(s)	635
MflI	RGATCY	1 cut(s)	1770
MhlI	GDGCHC	1 cut(s)	309
MlsI	TGGCCA	1 cut(s)	1273
MluNI	TGGCCA	1 cut(s)	1273
MlyI	GAGTC	3 cut(s)	61, 1459, 1527
MmeI	TCCRAC	5 cut(s)	294, 790, 825, 1501, 1968
Mox20I	TGGCCA	1 cut(s)	1273
Mph1103I	ATGCAT	1 cut(s)	2018
MroI	TCCGGA	1 cut(s)	1514
MroNI	GCCGGC	1 cut(s)	705
MscI	TGGCCA	1 cut(s)	1273
MseI	TTAA	8 cut(s)	257, 822, 848, 875, 945, 1289, 1581, 1890
MslI	CAYNNNNRTG	3 cut(s)	923, 1247, 2064
Msp20I	TGGCCA	1 cut(s)	1273
MspA1I	CMGCKG	3 cut(s)	1223, 1415, 1820
MspI	CCGG	6 cut(s)	63, 72, 706, 950, 1344, 1515
MspR9I	CCNGG	6 cut(s)	64, 72, 73, 1344, 1345, 1800
MunI	CAATTG	1 cut(s)	635
Mva1269I	GAATGC	2 cut(s)	206, 2016
MvaI	CCWGG	1 cut(s)	1800
MvnI	CGCG	1 cut(s)	1836
MwoI	GCNNNNNNNGC	6 cut(s)	210, 1421, 1508, 1539, 1734, 1823
NaeI	GCCGGC	1 cut(s)	707
NciI	CCSGG	5 cut(s)	64, 72, 73, 1344, 1345
NdeII	GATC	6 cut(s)	325, 532, 1237, 1693, 1770, 1882
NgoMIV	GCCGGC	1 cut(s)	705
NlaIV	GGNNCC	9 cut(s)	153, 171, 282, 306, 466, 642, 643, 1365, 1406
NmeAIII	GCCGAG	2 cut(s)	770, 1921
NmuCI	GTSAC	2 cut(s)	647, 1870
NsiI	ATGCAT	1 cut(s)	2018
NspI	RCATGY	4 cut(s)	695, 1073, 1506, 1748
OliI	CACNNNNGTG	2 cut(s)	923, 1247
PaeI	GCATGC	2 cut(s)	1073, 1506
PaeR7I	CTCGAG	1 cut(s)	1090
PaqCI	CACCTGC	1 cut(s)	148
PciI	ACATGT	2 cut(s)	691, 1744
PciSI	GCTCTTC	1 cut(s)	1130
PctI	GAATGC	2 cut(s)	206, 2016
PdiI	GCCGGC	1 cut(s)	707
PfeI	GAWTC	3 cut(s)	419, 1063, 1335
PflFI	GACNNNGTC	1 cut(s)	1794
PflMI	CCANNNNNTGG	1 cut(s)	1919
PinAI	ACCGGT	1 cut(s)	949
PkrI	GCNGC	9 cut(s)	526, 743, 996, 1222, 1304, 1414, 1417, 1588, 1819
Ple19I	CGATCG	1 cut(s)	535
PleI	GAGTC	3 cut(s)	61, 1458, 1526
PpsI	GAGTC	3 cut(s)	61, 1458, 1526
PpuMI	RGGWCCY	2 cut(s)	280, 641
PscI	ACATGT	2 cut(s)	691, 1744
PshAI	GACNNNNGTC	2 cut(s)	452, 1487
Psp1406I	AACGTT	1 cut(s)	1597
Psp5II	RGGWCCY	2 cut(s)	280, 641
Psp6I	CCWGG	1 cut(s)	1798
PspEI	GGTNACC	2 cut(s)	600, 1949
PspFI	CCCAGC	3 cut(s)	582, 805, 1223
PspGI	CCWGG	1 cut(s)	1798
PspN4I	GGNNCC	9 cut(s)	153, 171, 282, 306, 466, 642, 643, 1365, 1406
PspPI	GGNCC	7 cut(s)	134, 170, 223, 280, 641, 1404, 1639
PspPPI	RGGWCCY	2 cut(s)	280, 641
PstI	CTGCAG	2 cut(s)	1222, 1414
PsuI	RGATCY	1 cut(s)	1770
PsyI	GACNNNGTC	1 cut(s)	1794
PvuI	CGATCG	1 cut(s)	535
PvuII	CAGCTG	3 cut(s)	1223, 1415, 1820
RigI	GGCCGGCC	1 cut(s)	709
RsaI	GTAC	9 cut(s)	28, 59, 153, 466, 502, 964, 1354, 1635, 2026
RsaNI	GTAC	9 cut(s)	27, 58, 152, 465, 501, 963, 1353, 1634, 2025
RseI	CAYNNNNRTG	3 cut(s)	923, 1247, 2064
SalI	GTCGAC	1 cut(s)	1740
SapI	GCTCTTC	1 cut(s)	1130
SaqAI	TTAA	8 cut(s)	257, 822, 848, 875, 945, 1289, 1581, 1890
SatI	GCNGC	9 cut(s)	525, 742, 995, 1221, 1303, 1413, 1416, 1587, 1818
Sau3AI	GATC	6 cut(s)	325, 532, 1237, 1693, 1770, 1882
Sau96I	GGNCC	7 cut(s)	134, 170, 223, 280, 641, 1404, 1639
ScaI	AGTACT	2 cut(s)	28, 1354
SchI	GAGTC	3 cut(s)	61, 1459, 1527
ScrFI	CCNGG	6 cut(s)	64, 72, 73, 1344, 1345, 1800
SduI	GDGCHC	1 cut(s)	309
SfaNI	GCATC	5 cut(s)	135, 407, 464, 877, 1813
SfcI	CTRYAG	4 cut(s)	891, 1218, 1410, 1766
Sfr274I	CTCGAG	1 cut(s)	1090
SinI	GGWCC	5 cut(s)	134, 170, 280, 641, 1404
SlaI	CTCGAG	1 cut(s)	1090
SmaI	CCCGGG	2 cut(s)	73, 1345
SmiMI	CAYNNNNRTG	3 cut(s)	923, 1247, 2064
SmlI	CTYRAG	2 cut(s)	791, 1090
SmoI	CTYRAG	2 cut(s)	791, 1090
SphI	GCATGC	2 cut(s)	1073, 1506
SsiI	CCGC	5 cut(s)	100, 462, 741, 1142, 1187
SspI	AATATT	3 cut(s)	262, 1213, 1658
SspMI	CTAG	3 cut(s)	482, 597, 701
StyD4I	CCNGG	6 cut(s)	62, 70, 71, 1342, 1343, 1798
StyI	CCWWGG	1 cut(s)	710
TaaI	ACNGT	7 cut(s)	151, 725, 1152, 1796, 1864, 1949, 1955
TaiI	ACGT	3 cut(s)	732, 1600, 1781
TaqI	TCGA	7 cut(s)	198, 472, 531, 1077, 1091, 1468, 1741
TatI	WGTACW	3 cut(s)	26, 57, 1352
TauI	GCSGC	1 cut(s)	744
TfiI	GAWTC	3 cut(s)	419, 1063, 1335
Tru1I	TTAA	8 cut(s)	257, 822, 848, 875, 945, 1289, 1581, 1890
Tru9I	TTAA	8 cut(s)	257, 822, 848, 875, 945, 1289, 1581, 1890
TscAI	CASTG	4 cut(s)	136, 280, 846, 1879
TseFI	GTSAC	2 cut(s)	647, 1870
TseI	GCWGC	8 cut(s)	524, 994, 1220, 1302, 1412, 1415, 1586, 1817
Tsp45I	GTSAC	2 cut(s)	647, 1870
TspGWI	ACGGA	1 cut(s)	1019
TspMI	CCCGGG	2 cut(s)	71, 1343
TspRI	CASTG	4 cut(s)	136, 280, 846, 1879
Tth111I	GACNNNGTC	1 cut(s)	1794
Van91I	CCANNNNNTGG	1 cut(s)	1919
VpaK11BI	GGWCC	5 cut(s)	134, 170, 280, 641, 1404
XapI	RAATTY	4 cut(s)	40, 1007, 1676, 2039
XceI	RCATGY	4 cut(s)	695, 1073, 1506, 1748
XhoI	CTCGAG	1 cut(s)	1090
XmaI	CCCGGG	2 cut(s)	71, 1343
XmiI	GTMKAC	1 cut(s)	1741
XspI	CTAG	3 cut(s)	482, 597, 701
ZrmI	AGTACT	2 cut(s)	28, 1354
Zsp2I	ATGCAT	1 cut(s)	2018

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.