Double-stranded RNA-binding protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 3 cut(s) | 153, 182, 236 |
| AccII | CGCG | 1 cut(s) | 212 |
| AciI | CCGC | 8 cut(s) | 102, 151, 180, 210, 234, 917, 1250, 1319 |
| AclWI | GGATC | 3 cut(s) | 292, 1131, 1144 |
| AcoI | YGGCCR | 1 cut(s) | 1065 |
| AcsI | RAATTY | 4 cut(s) | 424, 521, 961, 1027 |
| AcyI | GRCGYC | 2 cut(s) | 78, 177 |
| AfaI | GTAC | 7 cut(s) | 59, 375, 437, 484, 620, 666, 1158 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 37, 1106, 1171, 1208 |
| AflIII | ACRYGT | 1 cut(s) | 661 |
| AgsI | TTSAA | 5 cut(s) | 7, 478, 647, 720, 866 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 946, 978, 1012, 1044 |
| AluBI | AGCT | 7 cut(s) | 16, 163, 336, 394, 557, 678, 775 |
| AluI | AGCT | 7 cut(s) | 16, 163, 336, 394, 557, 678, 775 |
| Alw21I | GWGCWC | 1 cut(s) | 201 |
| Alw26I | GTCTC | 3 cut(s) | 934, 1000, 1169 |
| AlwI | GGATC | 3 cut(s) | 292, 1131, 1144 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 986 |
| AoxI | GGCC | 4 cut(s) | 45, 121, 900, 1065 |
| ApeKI | GCWGC | 6 cut(s) | 16, 333, 394, 554, 557, 791 |
| ApoI | RAATTY | 4 cut(s) | 424, 521, 961, 1027 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 80, 112, 640, 672 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 525, 642, 1280 |
| AspLEI | GCGC | 2 cut(s) | 214, 1201 |
| AspS9I | GGNCC | 3 cut(s) | 45, 455, 901 |
| AsuC2I | CCSGG | 2 cut(s) | 857, 1331 |
| AsuHPI | GGTGA | 3 cut(s) | 365, 704, 764 |
| AvaII | GGWCC | 1 cut(s) | 455 |
| BalI | TGGCCA | 1 cut(s) | 1067 |
| BamHI | GGATCC | 1 cut(s) | 1136 |
| BbsI | GAAGAC | 1 cut(s) | 1341 |
| Bbv12I | GWGCWC | 1 cut(s) | 201 |
| BbvCI | CCTCAGC | 1 cut(s) | 252 |
| BbvI | GCAGC | 6 cut(s) | 3, 345, 381, 544, 566, 803 |
| BccI | CCATC | 4 cut(s) | 491, 913, 1108, 1309 |
| BceAI | ACGGC | 1 cut(s) | 136 |
| BcnI | CCSGG | 2 cut(s) | 857, 1331 |
| BcoDI | GTCTC | 3 cut(s) | 934, 1000, 1169 |
| BfmI | CTRYAG | 1 cut(s) | 17 |
| Bme1390I | CCNGG | 2 cut(s) | 857, 1331 |
| Bme18I | GGWCC | 1 cut(s) | 455 |
| BmgT120I | GGNCC | 3 cut(s) | 45, 455, 901 |
| BmiI | GGNNCC | 6 cut(s) | 419, 903, 978, 1044, 1078, 1138 |
| BmrFI | CCNGG | 2 cut(s) | 857, 1331 |
| BmrI | ACTGGG | 1 cut(s) | 252 |
| BmsI | GCATC | 2 cut(s) | 388, 532 |
| BmuI | ACTGGG | 1 cut(s) | 252 |
| BoxI | GACNNNNGTC | 1 cut(s) | 311 |
| BpiI | GAAGAC | 1 cut(s) | 1341 |
| Bpu10I | CCTNAGC | 2 cut(s) | 252, 707 |
| BpuEI | CTTGAG | 1 cut(s) | 1283 |
| BpuMI | CCSGG | 2 cut(s) | 857, 1331 |
| Bsa29I | ATCGAT | 1 cut(s) | 495 |
| BsaHI | GRCGYC | 2 cut(s) | 78, 177 |
| BsaI | GGTCTC | 2 cut(s) | 934, 1000 |
| BsaJI | CCNNGG | 4 cut(s) | 69, 723, 855, 1310 |
| BsaWI | WCCGGW | 2 cut(s) | 52, 1171 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 37, 1106, 1171, 1208 |
| Bse1I | ACTGG | 3 cut(s) | 258, 616, 1080 |
| BseCI | ATCGAT | 1 cut(s) | 495 |
| BseDI | CCNNGG | 4 cut(s) | 69, 723, 855, 1310 |
| BseGI | GGATG | 2 cut(s) | 547, 1320 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 37, 1106, 1171, 1208 |
| BseMII | CTCAG | 5 cut(s) | 266, 302, 335, 806, 873 |
| BseNI | ACTGG | 3 cut(s) | 258, 616, 1080 |
| BseRI | GAGGAG | 3 cut(s) | 145, 450, 750 |
| BseXI | GCAGC | 6 cut(s) | 3, 345, 381, 544, 566, 803 |
| BsgI | GTGCAG | 1 cut(s) | 810 |
| Bsh1236I | CGCG | 1 cut(s) | 212 |
| BshFI | GGCC | 4 cut(s) | 47, 123, 902, 1067 |
| BshVI | ATCGAT | 1 cut(s) | 495 |
| BsiHKAI | GWGCWC | 1 cut(s) | 201 |
| BsiSI | CCGG | 4 cut(s) | 53, 857, 1172, 1331 |
| BslFI | GGGAC | 1 cut(s) | 1105 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 37, 1106, 1171, 1208 |
| BsmAI | GTCTC | 3 cut(s) | 934, 1000, 1169 |
| BsmFI | GGGAC | 1 cut(s) | 1105 |
| BsmI | GAATGC | 1 cut(s) | 191 |
| BsnI | GGCC | 4 cut(s) | 47, 123, 902, 1067 |
| Bso31I | GGTCTC | 2 cut(s) | 934, 1000 |
| Bsp1286I | GDGCHC | 1 cut(s) | 201 |
| Bsp1407I | TGTACA | 4 cut(s) | 373, 482, 618, 1156 |
| Bsp143I | GATC | 8 cut(s) | 82, 284, 291, 573, 820, 922, 988, 1136 |
| BspACI | CCGC | 8 cut(s) | 102, 151, 180, 210, 234, 917, 1250, 1319 |
| BspANI | GGCC | 4 cut(s) | 47, 123, 902, 1067 |
| BspCNI | CTCAG | 5 cut(s) | 265, 301, 334, 807, 874 |
| BspDI | ATCGAT | 1 cut(s) | 495 |
| BspFNI | CGCG | 1 cut(s) | 212 |
| BspLI | GGNNCC | 6 cut(s) | 419, 903, 978, 1044, 1078, 1138 |
| BspMAI | CTGCAG | 1 cut(s) | 21 |
| BspPI | GGATC | 3 cut(s) | 292, 1131, 1144 |
| BspTNI | GGTCTC | 2 cut(s) | 934, 1000 |
| BsrBI | CCGCTC | 3 cut(s) | 153, 182, 236 |
| BsrGI | TGTACA | 4 cut(s) | 373, 482, 618, 1156 |
| BsrI | ACTGG | 3 cut(s) | 258, 616, 1080 |
| BssECI | CCNNGG | 4 cut(s) | 69, 723, 855, 1310 |
| BssMI | GATC | 8 cut(s) | 82, 284, 291, 573, 820, 922, 988, 1136 |
| BssNI | GRCGYC | 2 cut(s) | 78, 177 |
| BssT1I | CCWWGG | 1 cut(s) | 69 |
| Bst6I | CTCTTC | 1 cut(s) | 1271 |
| BstACI | GRCGYC | 2 cut(s) | 78, 177 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 566, 800 |
| BstAUI | TGTACA | 4 cut(s) | 373, 482, 618, 1156 |
| BstC8I | GCNNGC | 3 cut(s) | 165, 184, 777 |
| BstDEI | CTNAG | 9 cut(s) | 252, 288, 321, 707, 815, 882, 897, 1355, 1362 |
| BstDSI | CCRYGG | 2 cut(s) | 723, 1310 |
| BstF5I | GGATG | 2 cut(s) | 547, 1320 |
| BstFNI | CGCG | 1 cut(s) | 212 |
| BstHHI | GCGC | 2 cut(s) | 214, 1201 |
| BstKTI | GATC | 8 cut(s) | 85, 287, 294, 576, 823, 925, 991, 1139 |
| BstMAI | GTCTC | 3 cut(s) | 934, 1000, 1169 |
| BstMBI | GATC | 8 cut(s) | 82, 284, 291, 573, 820, 922, 988, 1136 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 188, 551, 566, 800, 1196 |
| BstNSI | RCATGY | 4 cut(s) | 554, 665, 706, 1163 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 311 |
| BstSCI | CCNGG | 2 cut(s) | 855, 1329 |
| BstSFI | CTRYAG | 1 cut(s) | 17 |
| BstUI | CGCG | 1 cut(s) | 212 |
| BstV1I | GCAGC | 6 cut(s) | 3, 345, 381, 544, 566, 803 |
| BstV2I | GAAGAC | 1 cut(s) | 1341 |
| BstX2I | RGATCY | 2 cut(s) | 284, 1136 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1087 |
| BstYI | RGATCY | 2 cut(s) | 284, 1136 |
| Bsu15I | ATCGAT | 1 cut(s) | 495 |
| BsuRI | GGCC | 4 cut(s) | 47, 123, 902, 1067 |
| BsuTUI | ATCGAT | 1 cut(s) | 495 |
| BtgI | CCRYGG | 2 cut(s) | 723, 1310 |
| BtsCI | GGATG | 2 cut(s) | 547, 1320 |
| BtsIMutI | CAGTG | 4 cut(s) | 334, 531, 1077, 1152 |
| Cac8I | GCNNGC | 3 cut(s) | 165, 184, 777 |
| CaiI | CAGNNNCTG | 1 cut(s) | 986 |
| CfoI | GCGC | 2 cut(s) | 214, 1201 |
| Cfr13I | GGNCC | 3 cut(s) | 45, 455, 901 |
| ClaI | ATCGAT | 1 cut(s) | 495 |
| CseI | GACGC | 3 cut(s) | 67, 185, 1330 |
| Csp6I | GTAC | 7 cut(s) | 58, 374, 436, 483, 619, 665, 1157 |
| CviAII | CATG | 5 cut(s) | 464, 551, 662, 703, 1160 |
| CviQI | GTAC | 7 cut(s) | 58, 374, 436, 483, 619, 665, 1157 |
| DdeI | CTNAG | 9 cut(s) | 252, 288, 321, 707, 815, 882, 897, 1355, 1362 |
| DpnI | GATC | 8 cut(s) | 84, 286, 293, 575, 822, 924, 990, 1138 |
| DpnII | GATC | 8 cut(s) | 82, 284, 291, 573, 820, 922, 988, 1136 |
| EaeI | YGGCCR | 1 cut(s) | 1065 |
| Eam1104I | CTCTTC | 1 cut(s) | 1271 |
| EarI | CTCTTC | 1 cut(s) | 1271 |
| Eco130I | CCWWGG | 1 cut(s) | 69 |
| Eco31I | GGTCTC | 2 cut(s) | 934, 1000 |
| Eco47I | GGWCC | 1 cut(s) | 455 |
| EcoO109I | RGGNCCY | 2 cut(s) | 455, 901 |
| EcoT14I | CCWWGG | 1 cut(s) | 69 |
| ErhI | CCWWGG | 1 cut(s) | 69 |
| FaeI | CATG | 5 cut(s) | 467, 554, 665, 706, 1163 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 510, 542, 627, 659, 1268, 1300 |
| FaqI | GGGAC | 1 cut(s) | 1105 |
| FatI | CATG | 5 cut(s) | 463, 550, 661, 702, 1159 |
| FauI | CCCGC | 1 cut(s) | 241 |
| FokI | GGATG | 2 cut(s) | 554, 1327 |
| GlaI | GCGC | 2 cut(s) | 213, 1200 |
| HaeIII | GGCC | 4 cut(s) | 47, 123, 902, 1067 |
| HapII | CCGG | 4 cut(s) | 53, 857, 1172, 1331 |
| HgaI | GACGC | 3 cut(s) | 67, 185, 1330 |
| HhaI | GCGC | 2 cut(s) | 214, 1201 |
| Hin1I | GRCGYC | 2 cut(s) | 78, 177 |
| Hin1II | CATG | 5 cut(s) | 467, 554, 665, 706, 1163 |
| Hin6I | GCGC | 2 cut(s) | 212, 1199 |
| HinP1I | GCGC | 2 cut(s) | 212, 1199 |
| HincII | GTYRAC | 4 cut(s) | 118, 349, 659, 1169 |
| HindII | GTYRAC | 4 cut(s) | 118, 349, 659, 1169 |
| HinfI | GANTC | 6 cut(s) | 594, 832, 983, 1049, 1253, 1281 |
| HpaII | CCGG | 4 cut(s) | 53, 857, 1172, 1331 |
| HphI | GGTGA | 3 cut(s) | 365, 704, 764 |
| Hpy166II | GTNNAC | 6 cut(s) | 118, 349, 436, 659, 695, 1169 |
| Hpy188I | TCNGA | 7 cut(s) | 291, 324, 816, 883, 988, 1054, 1234 |
| Hpy188III | TCNNGA | 3 cut(s) | 86, 518, 1262 |
| Hpy8I | GTNNAC | 6 cut(s) | 118, 349, 436, 659, 695, 1169 |
| Hpy99I | CGWCG | 3 cut(s) | 83, 179, 1346 |
| HpyAV | CCTTC | 8 cut(s) | 31, 157, 249, 446, 532, 638, 647, 860 |
| HpyCH4IV | ACGT | 1 cut(s) | 1183 |
| HpyCH4V | TGCA | 5 cut(s) | 19, 397, 554, 560, 791 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 188, 551, 566, 800, 1196 |
| HpyF3I | CTNAG | 9 cut(s) | 252, 288, 321, 707, 815, 882, 897, 1355, 1362 |
| HpySE526I | ACGT | 1 cut(s) | 1183 |
| Hsp92I | GRCGYC | 2 cut(s) | 78, 177 |
| Hsp92II | CATG | 5 cut(s) | 467, 554, 665, 706, 1163 |
| HspAI | GCGC | 2 cut(s) | 212, 1199 |
| Kzo9I | GATC | 8 cut(s) | 82, 284, 291, 573, 820, 922, 988, 1136 |
| LmnI | GCTCC | 2 cut(s) | 158, 241 |
| Lsp1109I | GCAGC | 6 cut(s) | 3, 345, 381, 544, 566, 803 |
| LweI | GCATC | 2 cut(s) | 388, 532 |
| MaeII | ACGT | 1 cut(s) | 1183 |
| MaeIII | GTNAC | 4 cut(s) | 487, 582, 1120, 1238 |
| MalI | GATC | 8 cut(s) | 84, 286, 293, 575, 822, 924, 990, 1138 |
| MbiI | CCGCTC | 3 cut(s) | 153, 182, 236 |
| MboI | GATC | 8 cut(s) | 82, 284, 291, 573, 820, 922, 988, 1136 |
| MboII | GAAGA | 5 cut(s) | 46, 518, 1276, 1288, 1346 |
| MflI | RGATCY | 2 cut(s) | 284, 1136 |
| MhlI | GDGCHC | 1 cut(s) | 201 |
| MlsI | TGGCCA | 1 cut(s) | 1067 |
| MluCI | AATT | 6 cut(s) | 424, 521, 954, 961, 1020, 1027 |
| MluNI | TGGCCA | 1 cut(s) | 1067 |
| MlyI | GAGTC | 3 cut(s) | 603, 841, 1247 |
| MmeI | TCCRAC | 1 cut(s) | 622 |
| Mox20I | TGGCCA | 1 cut(s) | 1067 |
| MroXI | GAANNNNTTC | 3 cut(s) | 525, 642, 1280 |
| MscI | TGGCCA | 1 cut(s) | 1067 |
| MseI | TTAA | 3 cut(s) | 341, 969, 1035 |
| Msp20I | TGGCCA | 1 cut(s) | 1067 |
| MspA1I | CMGCKG | 2 cut(s) | 394, 557 |
| MspI | CCGG | 4 cut(s) | 53, 857, 1172, 1331 |
| MspR9I | CCNGG | 2 cut(s) | 857, 1331 |
| Mva1269I | GAATGC | 1 cut(s) | 191 |
| MvnI | CGCG | 1 cut(s) | 212 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 188, 551, 566, 800, 1196 |
| NciI | CCSGG | 2 cut(s) | 857, 1331 |
| NdeII | GATC | 8 cut(s) | 82, 284, 291, 573, 820, 922, 988, 1136 |
| NlaIII | CATG | 5 cut(s) | 467, 554, 665, 706, 1163 |
| NlaIV | GGNNCC | 6 cut(s) | 419, 903, 978, 1044, 1078, 1138 |
| NspI | RCATGY | 4 cut(s) | 554, 665, 706, 1163 |
| PciI | ACATGT | 1 cut(s) | 661 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 105, 171 |
| PctI | GAATGC | 1 cut(s) | 191 |
| PdmI | GAANNNNTTC | 3 cut(s) | 525, 642, 1280 |
| PfeI | GAWTC | 3 cut(s) | 983, 1049, 1281 |
| PflFI | GACNNNGTC | 1 cut(s) | 1340 |
| PfoI | TCCNGGA | 1 cut(s) | 1329 |
| PleI | GAGTC | 3 cut(s) | 602, 840, 1247 |
| PpsI | GAGTC | 3 cut(s) | 602, 840, 1247 |
| PpuMI | RGGWCCY | 1 cut(s) | 455 |
| PscI | ACATGT | 1 cut(s) | 661 |
| PshAI | GACNNNNGTC | 1 cut(s) | 311 |
| Psp5II | RGGWCCY | 1 cut(s) | 455 |
| PspN4I | GGNNCC | 6 cut(s) | 419, 903, 978, 1044, 1078, 1138 |
| PspPI | GGNCC | 3 cut(s) | 45, 455, 901 |
| PspPPI | RGGWCCY | 1 cut(s) | 455 |
| PstI | CTGCAG | 1 cut(s) | 21 |
| PstNI | CAGNNNCTG | 1 cut(s) | 986 |
| PsuI | RGATCY | 2 cut(s) | 284, 1136 |
| PsyI | GACNNNGTC | 1 cut(s) | 1340 |
| PvuII | CAGCTG | 2 cut(s) | 394, 557 |
| RsaI | GTAC | 7 cut(s) | 59, 375, 437, 484, 620, 666, 1158 |
| RsaNI | GTAC | 7 cut(s) | 58, 374, 436, 483, 619, 665, 1157 |
| SaqAI | TTAA | 3 cut(s) | 341, 969, 1035 |
| Sau3AI | GATC | 8 cut(s) | 82, 284, 291, 573, 820, 922, 988, 1136 |
| Sau96I | GGNCC | 3 cut(s) | 45, 455, 901 |
| SchI | GAGTC | 3 cut(s) | 603, 841, 1247 |
| ScrFI | CCNGG | 2 cut(s) | 857, 1331 |
| SduI | GDGCHC | 1 cut(s) | 201 |
| SfaNI | GCATC | 2 cut(s) | 388, 532 |
| SfcI | CTRYAG | 1 cut(s) | 17 |
| SinI | GGWCC | 1 cut(s) | 455 |
| SmlI | CTYRAG | 1 cut(s) | 1262 |
| SmoI | CTYRAG | 1 cut(s) | 1262 |
| Sse9I | AATT | 6 cut(s) | 424, 521, 954, 961, 1020, 1027 |
| SsiI | CCGC | 8 cut(s) | 102, 151, 180, 210, 234, 917, 1250, 1319 |
| SspI | AATATT | 1 cut(s) | 401 |
| StyD4I | CCNGG | 2 cut(s) | 855, 1329 |
| StyI | CCWWGG | 1 cut(s) | 69 |
| TaiI | ACGT | 1 cut(s) | 1186 |
| TaqI | TCGA | 4 cut(s) | 11, 81, 195, 495 |
| TasI | AATT | 6 cut(s) | 424, 521, 954, 961, 1020, 1027 |
| TatI | WGTACW | 6 cut(s) | 57, 373, 435, 482, 618, 1156 |
| TauI | GCSGC | 5 cut(s) | 104, 182, 212, 920, 1322 |
| TfiI | GAWTC | 3 cut(s) | 983, 1049, 1281 |
| Tru1I | TTAA | 3 cut(s) | 341, 969, 1035 |
| Tru9I | TTAA | 3 cut(s) | 341, 969, 1035 |
| TscAI | CASTG | 4 cut(s) | 334, 538, 1077, 1159 |
| TseI | GCWGC | 6 cut(s) | 16, 333, 394, 554, 557, 791 |
| TspDTI | ATGAA | 1 cut(s) | 1203 |
| TspGWI | ACGGA | 2 cut(s) | 97, 1327 |
| TspRI | CASTG | 4 cut(s) | 334, 538, 1077, 1159 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1340 |
| VpaK11BI | GGWCC | 1 cut(s) | 455 |
| XapI | RAATTY | 4 cut(s) | 424, 521, 961, 1027 |
| XceI | RCATGY | 4 cut(s) | 554, 665, 706, 1163 |
| XmnI | GAANNNNTTC | 3 cut(s) | 525, 642, 1280 |