RLG00000018955

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001836
Physical Location & Seq
Reverse (-)
43407574 .. 43412488
4915 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018955

Sequence Viewer

Length: 1641 bp
ATGTTCAAGTCGAAGCTGCAGGAGCTGTGCCAGAAGAAGGCGTGGCCGTTACCGGAGTACAGCAGCAACAAGGAGGGCCTCGATCACGACCCTCGTTTCTCAGCCACCGTCAAAATCAACGGCCTCGAATTCAACACTGTCGACTCCTTCAGATCCTCCAAGTTGGCCCAAAACGACGCCGCTAGGCTCGCCTTCGATCACTTCTCTGCCCCCGCTACCCGCCCCATTCCTTTCGATTTCCCTCAGCCCAGTCTTGTCGCTATCACTCCCACTCCCTCAGGACTTCCCACAGGACTGGGCACTGATTGGAGTTTTACACACACACCACTGCAATTGCAAAAGACTCAAGAAACACATCAACCTCCTCAGGTCAGTGGTAATGCAACAGATGGTGGTTCTCAGGTCAGTGGTAATGCAACAGTTGATGGTTCTCAGGTCAGTGGTAATGCAACAGATGGTGGTTCTCAGGTCAGTGGTAATGCAACAGTTGATGGTTCTCAGGTCAGTGGTAATGCAACAGTTGCCGGTTTTAAGGTCAGTGGTAATGCAACAGTTGCCGGTTCTCAGGTCAGTGCAACAGGTTCCAGTTCTCAGATCAGTGGCAGAGCATTAGGTGTTGAAGGTGATAATAGATCTAAAGATATACAACATTTGCATAAGAACCAGCTGCAGCGTTATGCTCAAAAGAGGAATCTCATTTTACCTGTCTACTCTTGTGAGCGGGAAGGTCCTCCTCATGCCGCTCGTTTCAAATGTACAGTAACAATTGACGGAAAAACTTATCAGGGTCAAGAATTTCTTCCCACTGTGAAGGATGCTGAACATGCAGCTGCGGAAGTTGCTTTGATCTCCCTGTTGCCAAATGGAGTCCAAGAAGATGATTCCGGTTTGTACAAGAACCTTTTACAAGAACTAATTCAAAAAGAAGGTCAACATGTACCACTCTATAGCACAAGGACATCCGGTGAACCTCACATGCTTACTTTTGTTTCAACCGTGGAGATTGGAGGAGAATCTTTTACCGGTCAAATAGCAAGAAGCAAGAAGCTGGCAGAAGTGAGTGCAGCAAAGGTTGCCTATAATACGTTGAGAGATCGTAAGCCAAGACCGATCCCATTGTTTCTGACCCAGGCTTCACAAGGGCAAGAAGGATTGCAGTTCTTATCTTCGAATGCTCCATCATACATGGCTCCTGATCTACAACAACAAGTGAGACCTAACGCTCCCAAGATTTCAATTCCAAATACAGTTACTAGAGAACAAGAAAAGGAGATCAGCGTGGCTGCTGTGGGAACCAGTCATCAGTCTACAACTGTATCTTCAGAAGTTGATAATCATACAGTAGGTGGAGGATCCACTTCGTCTGGCACTGTACCTGGCCGTGGACTGAAGACTTTACGTTCTGCTTCCCCTGCATCCCAAAGTGGATCCTCTTCGACTTTGACTTATTTCTGTACTTCAAATATGGACTCTACTCTTCAGCCACCAGCGAAAAGAACTACATACTCTAACATAGTTGCTGTACATCCACGGATGTCGAATATGACAATCCCAGAAGACTGCGTTGTGTTGTCCCTTAGTGATGAAACTTGGGTTGCTGTATCGCCCATGAAGACAGAAGGTATGACAAATCACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0098586 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

547

Amino Acids

58.18

Weight (kDa)

6.71

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 3 - 65 1e-11 Double-stranded RNA binding motif
dsrm PF00035 220 - 284 9.2e-15 Double-stranded RNA binding motif
dsrm PF00035 298 - 363 1.6e-13 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 721, 743
AccI GTMKAC 3 cut(s) 141, 708, 1307
AciI CCGC 6 cut(s) 180, 213, 220, 721, 741, 833
AclWI GGATC 6 cut(s) 147, 1105, 1347, 1360, 1422, 1435
AcoI YGGCCR 2 cut(s) 44, 1378
AcsI RAATTY 2 cut(s) 128, 794
AcuI CTGAAG 4 cut(s) 133, 1305, 1409, 1463
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 7 cut(s) 59, 757, 893, 939, 1374, 1456, 1524
AfiI CCNNNNNNNGG 2 cut(s) 37, 1382
AflIII ACRYGT 1 cut(s) 934
AgeI ACCGGT 1 cut(s) 1022
AgsI TTSAA 8 cut(s) 7, 133, 620, 751, 920, 993, 1236, 1461
AjnI CCWGG 2 cut(s) 1128, 1375
AluBI AGCT 5 cut(s) 16, 25, 667, 830, 1048
AluI AGCT 5 cut(s) 16, 25, 667, 830, 1048
Alw26I GTCTC 1 cut(s) 1207
AlwI GGATC 6 cut(s) 147, 1105, 1347, 1360, 1422, 1435
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 5 cut(s) 44, 76, 121, 165, 1378
ApeKI GCWGC 8 cut(s) 16, 63, 667, 670, 827, 830, 1064, 1283
ApoI RAATTY 2 cut(s) 128, 794
ArsI GACNNNNNNTTYG 2 cut(s) 913, 945
AsiGI ACCGGT 1 cut(s) 1022
Asp700I GAANNNNTTC 2 cut(s) 798, 915
AspS9I GGNCC 3 cut(s) 76, 166, 728
AsuHPI GGTGA 2 cut(s) 635, 977
AsuII TTCGAA 1 cut(s) 1169
AvaII GGWCC 1 cut(s) 728
AxyI CCTNAGG 2 cut(s) 277, 366
BaeGI GKGCMC 1 cut(s) 302
BaeI ACNNNNGTAYC 2 cut(s) 1299, 1332
BamHI GGATCC 2 cut(s) 1352, 1427
BbsI GAAGAC 3 cut(s) 1397, 1563, 1619
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 8 cut(s) 3, 75, 654, 682, 817, 839, 1076, 1270
BccI CCATC 5 cut(s) 383, 419, 449, 485, 1186
BceAI ACGGC 3 cut(s) 31, 136, 1365
BciT130I CCWGG 2 cut(s) 1130, 1377
BcoDI GTCTC 1 cut(s) 1207
BfaI CTAG 2 cut(s) 183, 1254
BfmI CTRYAG 3 cut(s) 17, 668, 946
BglII AGATCT 1 cut(s) 632
Bme1390I CCNGG 2 cut(s) 1130, 1377
Bme18I GGWCC 1 cut(s) 728
BmgT120I GGNCC 3 cut(s) 76, 166, 728
BmiI GGNNCC 5 cut(s) 583, 1191, 1294, 1354, 1429
BmrFI CCNGG 2 cut(s) 1130, 1377
BmrI ACTGGG 2 cut(s) 243, 305
BmsI GCATC 2 cut(s) 805, 1424
BmuI ACTGGG 2 cut(s) 243, 305
BpiI GAAGAC 3 cut(s) 1397, 1563, 1619
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 1169
BpuEI CTTGAG 1 cut(s) 330
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 1207
BsaJI CCNNGG 4 cut(s) 996, 1128, 1381, 1529
BsaWI WCCGGW 4 cut(s) 52, 884, 962, 1022
BsaXI ACNNNNNCTCC 2 cut(s) 256, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 1382
Bse118I RCCGGY 3 cut(s) 524, 557, 1022
Bse1I ACTGG 4 cut(s) 249, 300, 585, 1296
Bse21I CCTNAGG 2 cut(s) 277, 366
BseBI CCWGG 2 cut(s) 1130, 1377
BseDI CCNNGG 4 cut(s) 996, 1128, 1381, 1529
BseGI GGATG 5 cut(s) 820, 959, 1415, 1525, 1539
BseLI CCNNNNNNNGG 2 cut(s) 37, 1382
BseNI ACTGG 4 cut(s) 249, 300, 585, 1296
BseRI GAGGAG 3 cut(s) 354, 723, 1023
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 8 cut(s) 3, 75, 654, 682, 817, 839, 1076, 1270
BsgI GTGCAG 1 cut(s) 1083
BshFI GGCC 5 cut(s) 46, 78, 123, 167, 1380
BshTI ACCGGT 1 cut(s) 1022
BsiSI CCGG 6 cut(s) 53, 525, 558, 885, 963, 1023
BslFI GGGAC 1 cut(s) 1558
BslI CCNNNNNNNGG 2 cut(s) 37, 1382
BsmAI GTCTC 1 cut(s) 1207
BsmFI GGGAC 1 cut(s) 1558
BsmI GAATGC 1 cut(s) 1177
BsnI GGCC 5 cut(s) 46, 78, 123, 167, 1380
Bso31I GGTCTC 1 cut(s) 1207
Bsp119I TTCGAA 1 cut(s) 1169
Bsp1286I GDGCHC 1 cut(s) 302
Bsp1407I TGTACA 3 cut(s) 755, 891, 1522
BspACI CCGC 6 cut(s) 180, 213, 220, 721, 741, 833
BspANI GGCC 5 cut(s) 46, 78, 123, 167, 1380
BspLI GGNNCC 5 cut(s) 583, 1191, 1294, 1354, 1429
BspMAI CTGCAG 2 cut(s) 21, 672
BspPI GGATC 6 cut(s) 147, 1105, 1347, 1360, 1422, 1435
BspT104I TTCGAA 1 cut(s) 1169
BspTNI GGTCTC 1 cut(s) 1207
BsrBI CCGCTC 2 cut(s) 721, 743
BsrFI RCCGGY 3 cut(s) 524, 557, 1022
BsrGI TGTACA 3 cut(s) 755, 891, 1522
BsrI ACTGG 4 cut(s) 249, 300, 585, 1296
BssAI RCCGGY 3 cut(s) 524, 557, 1022
BssECI CCNNGG 4 cut(s) 996, 1128, 1381, 1529
BssNI GRCGYC 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 1130, 1377
Bst6I CTCTTC 2 cut(s) 1438, 1482
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 3 cut(s) 521, 554, 1073
BstAUI TGTACA 3 cut(s) 755, 891, 1522
BstBI TTCGAA 1 cut(s) 1169
BstC8I GCNNGC 2 cut(s) 189, 1050
BstDSI CCRYGG 3 cut(s) 996, 1381, 1529
BstF5I GGATG 5 cut(s) 820, 959, 1415, 1525, 1539
BstMAI GTCTC 1 cut(s) 1207
BstMWI GCNNNNNNNGC 8 cut(s) 22, 188, 521, 554, 824, 839, 1073, 1412
BstNI CCWGG 2 cut(s) 1130, 1377
BstNSI RCATGY 3 cut(s) 827, 938, 979
BstSCI CCNGG 2 cut(s) 1128, 1375
BstSFI CTRYAG 3 cut(s) 17, 668, 946
BstSLI GKGCMC 1 cut(s) 302
BstV1I GCAGC 8 cut(s) 3, 75, 654, 682, 817, 839, 1076, 1270
BstV2I GAAGAC 3 cut(s) 1397, 1563, 1619
BstX2I RGATCY 4 cut(s) 152, 632, 1352, 1427
BstXI CCANNNNNNTGG 1 cut(s) 295
BstYI RGATCY 4 cut(s) 152, 632, 1352, 1427
Bsu36I CCTNAGG 2 cut(s) 277, 366
BsuRI GGCC 5 cut(s) 46, 78, 123, 167, 1380
BtgI CCRYGG 3 cut(s) 996, 1381, 1529
BtsCI GGATG 5 cut(s) 820, 959, 1415, 1525, 1539
BtsI GCAGTG 1 cut(s) 326
Cac8I GCNNGC 2 cut(s) 189, 1050
CaiI CAGNNNCTG 1 cut(s) 25
Cfr10I RCCGGY 3 cut(s) 524, 557, 1022
Cfr13I GGNCC 3 cut(s) 76, 166, 728
CseI GACGC 1 cut(s) 185
Csp6I GTAC 7 cut(s) 58, 756, 892, 938, 1373, 1455, 1523
CspAI ACCGGT 1 cut(s) 1022
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 6 cut(s) 737, 824, 935, 976, 1186, 1609
CviQI GTAC 7 cut(s) 58, 756, 892, 938, 1373, 1455, 1523
EaeI YGGCCR 2 cut(s) 44, 1378
Eam1104I CTCTTC 2 cut(s) 1438, 1482
EarI CTCTTC 2 cut(s) 1438, 1482
Eco31I GGTCTC 1 cut(s) 1207
Eco47I GGWCC 1 cut(s) 728
Eco57I CTGAAG 4 cut(s) 133, 1305, 1409, 1463
Eco81I CCTNAGG 2 cut(s) 277, 366
EcoO109I RGGNCCY 2 cut(s) 76, 728
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 1128, 1375
FaeI CATG 6 cut(s) 740, 827, 938, 979, 1189, 1612
FalI AAGNNNNNCTT 2 cut(s) 783, 815
FaqI GGGAC 1 cut(s) 1558
FatI CATG 6 cut(s) 736, 823, 934, 975, 1185, 1608
FauI CCCGC 3 cut(s) 220, 227, 714
FblI GTMKAC 3 cut(s) 141, 708, 1307
FokI GGATG 5 cut(s) 827, 946, 1402, 1512, 1546
FspBI CTAG 2 cut(s) 183, 1254
HaeIII GGCC 5 cut(s) 46, 78, 123, 167, 1380
HapII CCGG 6 cut(s) 53, 525, 558, 885, 963, 1023
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 6 cut(s) 740, 827, 938, 979, 1189, 1612
HincII GTYRAC 2 cut(s) 142, 932
HindII GTYRAC 2 cut(s) 142, 932
HinfI GANTC 7 cut(s) 143, 343, 691, 867, 881, 1013, 1469
HpaII CCGG 6 cut(s) 53, 525, 558, 885, 963, 1023
HphI GGTGA 2 cut(s) 635, 977
Hpy166II GTNNAC 6 cut(s) 142, 709, 932, 968, 1308, 1385
Hpy188I TCNGA 4 cut(s) 152, 594, 1125, 1324
Hpy188III TCNNGA 5 cut(s) 86, 279, 347, 791, 1193
Hpy8I GTNNAC 6 cut(s) 142, 709, 932, 968, 1308, 1385
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 9 cut(s) 31, 157, 202, 614, 719, 805, 920, 1142, 1613
HpyCH4IV ACGT 2 cut(s) 1085, 1399
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 188, 521, 554, 824, 839, 1073, 1412
HpySE526I ACGT 2 cut(s) 1085, 1399
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 6 cut(s) 740, 827, 938, 979, 1189, 1612
LmnI GCTCC 4 cut(s) 22, 1180, 1195, 1228
Lsp1109I GCAGC 8 cut(s) 3, 75, 654, 682, 817, 839, 1076, 1270
LweI GCATC 2 cut(s) 805, 1424
MaeI CTAG 2 cut(s) 183, 1254
MaeII ACGT 2 cut(s) 1085, 1399
MaeIII GTNAC 3 cut(s) 48, 760, 1249
MbiI CCGCTC 2 cut(s) 721, 743
MfeI CAATTG 2 cut(s) 332, 765
MflI RGATCY 4 cut(s) 152, 632, 1352, 1427
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 6 cut(s) 128, 332, 765, 794, 915, 1236
MlyI GAGTC 4 cut(s) 137, 337, 876, 1463
MroXI GAANNNNTTC 2 cut(s) 798, 915
MseI TTAA 1 cut(s) 531
MspA1I CMGCKG 2 cut(s) 667, 830
MspI CCGG 6 cut(s) 53, 525, 558, 885, 963, 1023
MspR9I CCNGG 2 cut(s) 1130, 1377
MunI CAATTG 2 cut(s) 332, 765
Mva1269I GAATGC 1 cut(s) 1177
MvaI CCWGG 2 cut(s) 1130, 1377
MwoI GCNNNNNNNGC 8 cut(s) 22, 188, 521, 554, 824, 839, 1073, 1412
NlaIII CATG 6 cut(s) 740, 827, 938, 979, 1189, 1612
NlaIV GGNNCC 5 cut(s) 583, 1191, 1294, 1354, 1429
NspI RCATGY 3 cut(s) 827, 938, 979
NspV TTCGAA 1 cut(s) 1169
PciI ACATGT 1 cut(s) 934
PctI GAATGC 1 cut(s) 1177
PdmI GAANNNNTTC 2 cut(s) 798, 915
PfeI GAWTC 3 cut(s) 691, 881, 1013
PinAI ACCGGT 1 cut(s) 1022
PleI GAGTC 4 cut(s) 137, 337, 875, 1463
PpsI GAGTC 4 cut(s) 137, 337, 875, 1463
PpuMI RGGWCCY 1 cut(s) 728
PscI ACATGT 1 cut(s) 934
Psp5II RGGWCCY 1 cut(s) 728
Psp6I CCWGG 2 cut(s) 1128, 1375
PspGI CCWGG 2 cut(s) 1128, 1375
PspN4I GGNNCC 5 cut(s) 583, 1191, 1294, 1354, 1429
PspPI GGNCC 3 cut(s) 76, 166, 728
PspPPI RGGWCCY 1 cut(s) 728
PstI CTGCAG 2 cut(s) 21, 672
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 4 cut(s) 152, 632, 1352, 1427
PvuII CAGCTG 2 cut(s) 667, 830
RsaI GTAC 7 cut(s) 59, 757, 893, 939, 1374, 1456, 1524
RsaNI GTAC 7 cut(s) 58, 756, 892, 938, 1373, 1455, 1523
SalI GTCGAC 1 cut(s) 140
SaqAI TTAA 1 cut(s) 531
Sau96I GGNCC 3 cut(s) 76, 166, 728
SchI GAGTC 4 cut(s) 137, 337, 876, 1463
ScrFI CCNGG 2 cut(s) 1130, 1377
SduI GDGCHC 1 cut(s) 302
SfaNI GCATC 2 cut(s) 805, 1424
SfcI CTRYAG 3 cut(s) 17, 668, 946
SfuI TTCGAA 1 cut(s) 1169
SinI GGWCC 1 cut(s) 728
SmlI CTYRAG 1 cut(s) 345
SmoI CTYRAG 1 cut(s) 345
Sse9I AATT 6 cut(s) 128, 332, 765, 794, 915, 1236
SsiI CCGC 6 cut(s) 180, 213, 220, 721, 741, 833
SspMI CTAG 2 cut(s) 183, 1254
StyD4I CCNGG 2 cut(s) 1128, 1375
TaiI ACGT 2 cut(s) 1088, 1402
TaqI TCGA 9 cut(s) 11, 81, 126, 141, 195, 234, 1169, 1436, 1538
TaqII GACCGA 1 cut(s) 1123
TasI AATT 6 cut(s) 128, 332, 765, 794, 915, 1236
TatI WGTACW 5 cut(s) 57, 755, 891, 1454, 1522
TauI GCSGC 2 cut(s) 182, 743
TfiI GAWTC 3 cut(s) 691, 881, 1013
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TseI GCWGC 8 cut(s) 16, 63, 667, 670, 827, 830, 1064, 1283
TspDTI ATGAA 2 cut(s) 1599, 1625
TspGWI ACGGA 2 cut(s) 786, 1546
VpaK11BI GGWCC 1 cut(s) 728
XapI RAATTY 2 cut(s) 128, 794
XceI RCATGY 3 cut(s) 827, 938, 979
XmiI GTMKAC 3 cut(s) 141, 708, 1307
XmnI GAANNNNTTC 2 cut(s) 798, 915
XspI CTAG 2 cut(s) 183, 1254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.