Rmu_sc0004744.1_g000005

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004744.1
OG0001836
Physical Location & Seq
Reverse (-)
6984 .. 11783
4800 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004744.1_g000005.1.cds

Sequence Viewer

Length: 1539 bp
atgttcaagtcgaagctgcaggagctgtgccagaagaaggcgtggccgttaccggagtacagcagcaacaaggagggcctcgaccacgaccctcgtttctcagccaccgtcaaaatcaacggccgtgaattcaacactgtcgaccccttcagatcctccaagttggcccaaaacgacgccgctaggctcgccttcgatcacttctctgcccccgctacccgccccattcctttcgatttccctcagccgagtcttgtcgctatcgctcccgctcccactccctcaggactgggcactgattggagttttacaaacacaccactgcaattgcaaaagactcaagaaacacatcaacctcctcaggtcagtggtaatgcaacagatggtggttctcaggtcagtggtaatgcaacagctgccggttctcaggtcagtggtaatgcaacagttgccggttctcaggtcagtgcaacaggttccagttctcagatcagtggcagagcattaggtgttgaaggtgataatagatctaaaggtatacaacatttgcataagaaccagctgcagcgttatgctcacaagaggaatctcattttacctgtctactcttgtgagcgggaaggtcctcctcatgccgctcgtttcaaatgtacagtaacaatcgatggaaaaacttatcagggtcaagaatttcttcccactgtgaaggatgctgaacatgcagctgcagaagttgctttgatctccctgttgccaaatggagtccaagaagatgattccggtttgtacaagaaccttttacaagaactaattcaaaaagaaggtcaacatgtaccactctatagcacaaggacatccggtgaacctcacatgcttacttttgtttcaaccgtggagattggaggagaatcttttaccggtcaagtagcaagaagcaagaagctggcagaagtgagtgcagcaaaggctgcctataatactttgagagatcgtaagtcaagtccgatcccgttgtttctgacccaggcttcacaagggcaagaaggattgcagttcttatcttcgaatgctccatcatacatggctcctgatctacaacaacaagtgagacctaacgctcccaagatttcaattccaaattcagttactagggaacaagaaaaggagatcagcgtggctgctgtgggaaccagtcatcagtctacaactgtatcttcaggagttgataatcatacagtaggtggaggatccacttcgtctgacactgtacctggccgtgtactgaagacttcacgttctgcttcccctccatcccaaagtggatcctcttcgactttgacttatttctgtacttcaaatatggactctactcttcagccaccagcgaaaagaagtacatcatacactaacatagttgctgtacatccacggatgtcgaatatgacactcccagaagactgcgttgtgttgtcccttagtgatgaaacttgggttgctgtatcacccatgaagaccgaaggtataacaaatcactcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0098586 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

512

Amino Acids

54.8

Weight (kDa)

7.72

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 272, 616, 638
AccI GTMKAC 4 cut(s) 141, 538, 603, 1202
AciI CCGC 6 cut(s) 180, 213, 220, 270, 616, 636
AclWI GGATC 6 cut(s) 147, 1000, 1242, 1255, 1317, 1330
AcoI YGGCCR 3 cut(s) 44, 121, 1273
AcsI RAATTY 3 cut(s) 128, 689, 1138
AcuI CTGAAG 4 cut(s) 133, 1200, 1304, 1358
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 9 cut(s) 59, 652, 788, 834, 1269, 1281, 1351, 1396, 1422
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 829
AgeI ACCGGT 1 cut(s) 917
AgsI TTSAA 8 cut(s) 7, 133, 515, 646, 815, 888, 1131, 1356
AjnI CCWGG 2 cut(s) 1023, 1270
AluBI AGCT 6 cut(s) 16, 25, 416, 562, 725, 943
AluI AGCT 6 cut(s) 16, 25, 416, 562, 725, 943
Alw26I GTCTC 1 cut(s) 1102
AlwI GGATC 6 cut(s) 147, 1000, 1242, 1255, 1317, 1330
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 5 cut(s) 44, 76, 121, 165, 1273
ApoI RAATTY 3 cut(s) 128, 689, 1138
ArsI GACNNNNNNTTYG 2 cut(s) 808, 840
AsiGI ACCGGT 1 cut(s) 917
Asp700I GAANNNNTTC 2 cut(s) 693, 810
AspS9I GGNCC 3 cut(s) 76, 166, 623
AsuHPI GGTGA 3 cut(s) 530, 872, 1494
AsuII TTCGAA 1 cut(s) 1064
AvaII GGWCC 1 cut(s) 623
AxyI CCTNAGG 2 cut(s) 283, 360
BaeGI GKGCMC 1 cut(s) 296
BaeI ACNNNNGTAYC 2 cut(s) 1194, 1227
BamHI GGATCC 2 cut(s) 1247, 1322
BbsI GAAGAC 3 cut(s) 1292, 1461, 1517
BbvCI CCTCAGC 1 cut(s) 243
BccI CCATC 4 cut(s) 377, 659, 1081, 1318
BceAI ACGGC 4 cut(s) 31, 108, 136, 1260
BciT130I CCWGG 2 cut(s) 1025, 1272
BcoDI GTCTC 1 cut(s) 1102
BfaI CTAG 2 cut(s) 183, 1149
BfmI CTRYAG 4 cut(s) 17, 563, 726, 841
BglII AGATCT 1 cut(s) 527
Bme1390I CCNGG 2 cut(s) 1025, 1272
Bme18I GGWCC 1 cut(s) 623
BmgT120I GGNCC 3 cut(s) 76, 166, 623
BmiI GGNNCC 5 cut(s) 478, 1086, 1189, 1249, 1324
BmrFI CCNGG 2 cut(s) 1025, 1272
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 1 cut(s) 700
BmuI ACTGGG 1 cut(s) 299
BpiI GAAGAC 3 cut(s) 1292, 1461, 1517
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 1064
BpuEI CTTGAG 1 cut(s) 324
Bsa29I ATCGAT 1 cut(s) 663
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 1102
BsaJI CCNNGG 3 cut(s) 891, 1023, 1427
BsaWI WCCGGW 4 cut(s) 52, 779, 857, 917
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 3 cut(s) 419, 452, 917
Bse1I ACTGG 3 cut(s) 294, 480, 1191
Bse21I CCTNAGG 2 cut(s) 283, 360
BseBI CCWGG 2 cut(s) 1025, 1272
BseCI ATCGAT 1 cut(s) 663
BseDI CCNNGG 3 cut(s) 891, 1023, 1427
BseGI GGATG 5 cut(s) 715, 854, 1310, 1423, 1437
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 8 cut(s) 114, 257, 297, 374, 407, 440, 473, 500
BseNI ACTGG 3 cut(s) 294, 480, 1191
BseRI GAGGAG 3 cut(s) 348, 618, 918
BseSI GKGCMC 1 cut(s) 296
BseX3I CGGCCG 1 cut(s) 121
BsgI GTGCAG 1 cut(s) 978
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 5 cut(s) 46, 78, 123, 167, 1275
BshTI ACCGGT 1 cut(s) 917
BshVI ATCGAT 1 cut(s) 663
BsiEI CGRYCG 1 cut(s) 124
BsiSI CCGG 6 cut(s) 53, 420, 453, 780, 858, 918
BslFI GGGAC 1 cut(s) 1456
BslI CCNNNNNNNGG 1 cut(s) 37
BsmAI GTCTC 1 cut(s) 1102
BsmFI GGGAC 1 cut(s) 1456
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 5 cut(s) 46, 78, 123, 167, 1275
Bso31I GGTCTC 1 cut(s) 1102
Bsp119I TTCGAA 1 cut(s) 1064
Bsp1286I GDGCHC 1 cut(s) 296
Bsp1407I TGTACA 3 cut(s) 650, 786, 1420
BspACI CCGC 6 cut(s) 180, 213, 220, 270, 616, 636
BspANI GGCC 5 cut(s) 46, 78, 123, 167, 1275
BspCNI CTCAG 8 cut(s) 113, 256, 296, 373, 406, 439, 472, 499
BspDI ATCGAT 1 cut(s) 663
BspLI GGNNCC 5 cut(s) 478, 1086, 1189, 1249, 1324
BspMAI CTGCAG 3 cut(s) 21, 567, 730
BspPI GGATC 6 cut(s) 147, 1000, 1242, 1255, 1317, 1330
BspT104I TTCGAA 1 cut(s) 1064
BspTNI GGTCTC 1 cut(s) 1102
BsrBI CCGCTC 3 cut(s) 272, 616, 638
BsrFI RCCGGY 3 cut(s) 419, 452, 917
BsrGI TGTACA 3 cut(s) 650, 786, 1420
BsrI ACTGG 3 cut(s) 294, 480, 1191
BssAI RCCGGY 3 cut(s) 419, 452, 917
BssECI CCNNGG 3 cut(s) 891, 1023, 1427
BssNAI GTATAC 1 cut(s) 539
BssNI GRCGYC 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 539
Bst2UI CCWGG 2 cut(s) 1025, 1272
Bst4CI ACNGT 9 cut(s) 109, 139, 448, 655, 703, 892, 1210, 1237, 1267
Bst6I CTCTTC 2 cut(s) 1333, 1377
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 4 cut(s) 416, 449, 734, 968
BstAUI TGTACA 3 cut(s) 650, 786, 1420
BstBI TTCGAA 1 cut(s) 1064
BstC8I GCNNGC 2 cut(s) 189, 945
BstDEI CTNAG 9 cut(s) 100, 243, 283, 360, 393, 426, 459, 486, 1475
BstDSI CCRYGG 2 cut(s) 891, 1427
BstF5I GGATG 5 cut(s) 715, 854, 1310, 1423, 1437
BstMAI GTCTC 1 cut(s) 1102
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 8 cut(s) 22, 188, 416, 449, 719, 734, 965, 968
BstNI CCWGG 2 cut(s) 1025, 1272
BstNSI RCATGY 3 cut(s) 722, 833, 874
BstSCI CCNGG 2 cut(s) 1023, 1270
BstSFI CTRYAG 4 cut(s) 17, 563, 726, 841
BstSLI GKGCMC 1 cut(s) 296
BstV2I GAAGAC 3 cut(s) 1292, 1461, 1517
BstX2I RGATCY 4 cut(s) 152, 527, 1247, 1322
BstYI RGATCY 4 cut(s) 152, 527, 1247, 1322
BstZ17I GTATAC 1 cut(s) 539
BstZI CGGCCG 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 663
Bsu36I CCTNAGG 2 cut(s) 283, 360
BsuRI GGCC 5 cut(s) 46, 78, 123, 167, 1275
BsuTUI ATCGAT 1 cut(s) 663
BtgI CCRYGG 2 cut(s) 891, 1427
BtsCI GGATG 5 cut(s) 715, 854, 1310, 1423, 1437
BtsI GCAGTG 1 cut(s) 320
Cac8I GCNNGC 2 cut(s) 189, 945
CaiI CAGNNNCTG 1 cut(s) 25
Cfr10I RCCGGY 3 cut(s) 419, 452, 917
Cfr13I GGNCC 3 cut(s) 76, 166, 623
ClaI ATCGAT 1 cut(s) 663
CseI GACGC 1 cut(s) 185
Csp6I GTAC 9 cut(s) 58, 651, 787, 833, 1268, 1280, 1350, 1395, 1421
CspAI ACCGGT 1 cut(s) 917
CspCI CAANNNNNGTGG 2 cut(s) 309, 344
CviAII CATG 6 cut(s) 632, 719, 830, 871, 1081, 1507
CviQI GTAC 9 cut(s) 58, 651, 787, 833, 1268, 1280, 1350, 1395, 1421
DdeI CTNAG 9 cut(s) 100, 243, 283, 360, 393, 426, 459, 486, 1475
EaeI YGGCCR 3 cut(s) 44, 121, 1273
EagI CGGCCG 1 cut(s) 121
Eam1104I CTCTTC 2 cut(s) 1333, 1377
EarI CTCTTC 2 cut(s) 1333, 1377
EclXI CGGCCG 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 1102
Eco47I GGWCC 1 cut(s) 623
Eco52I CGGCCG 1 cut(s) 121
Eco57I CTGAAG 4 cut(s) 133, 1200, 1304, 1358
Eco81I CCTNAGG 2 cut(s) 283, 360
EcoO109I RGGNCCY 2 cut(s) 76, 623
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 2 cut(s) 1023, 1270
FaeI CATG 6 cut(s) 635, 722, 833, 874, 1084, 1510
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FaqI GGGAC 1 cut(s) 1456
FatI CATG 6 cut(s) 631, 718, 829, 870, 1080, 1506
FauI CCCGC 4 cut(s) 220, 227, 277, 609
FblI GTMKAC 4 cut(s) 141, 538, 603, 1202
FokI GGATG 5 cut(s) 722, 841, 1297, 1410, 1444
FspBI CTAG 2 cut(s) 183, 1149
HaeIII GGCC 5 cut(s) 46, 78, 123, 167, 1275
HapII CCGG 6 cut(s) 53, 420, 453, 780, 858, 918
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 6 cut(s) 635, 722, 833, 874, 1084, 1510
HincII GTYRAC 2 cut(s) 142, 827
HindII GTYRAC 2 cut(s) 142, 827
HinfI GANTC 7 cut(s) 250, 337, 586, 762, 776, 908, 1364
HpaII CCGG 6 cut(s) 53, 420, 453, 780, 858, 918
HphI GGTGA 3 cut(s) 530, 872, 1494
Hpy166II GTNNAC 7 cut(s) 142, 539, 604, 827, 863, 1203, 1280
Hpy188I TCNGA 5 cut(s) 152, 489, 1005, 1020, 1261
Hpy188III TCNNGA 5 cut(s) 285, 341, 686, 1088, 1218
Hpy8I GTNNAC 7 cut(s) 142, 539, 604, 827, 863, 1203, 1280
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 9 cut(s) 31, 157, 202, 509, 614, 700, 815, 1037, 1511
HpyCH4III ACNGT 9 cut(s) 109, 139, 448, 655, 703, 892, 1210, 1237, 1267
HpyCH4IV ACGT 1 cut(s) 1294
HpyF10VI GCNNNNNNNGC 8 cut(s) 22, 188, 416, 449, 719, 734, 965, 968
HpyF3I CTNAG 9 cut(s) 100, 243, 283, 360, 393, 426, 459, 486, 1475
HpySE526I ACGT 1 cut(s) 1294
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 6 cut(s) 635, 722, 833, 874, 1084, 1510
LmnI GCTCC 6 cut(s) 22, 271, 277, 1075, 1090, 1123
LweI GCATC 1 cut(s) 700
MaeI CTAG 2 cut(s) 183, 1149
MaeII ACGT 1 cut(s) 1294
MaeIII GTNAC 3 cut(s) 48, 655, 1144
MbiI CCGCTC 3 cut(s) 272, 616, 638
MfeI CAATTG 1 cut(s) 326
MflI RGATCY 4 cut(s) 152, 527, 1247, 1322
MhlI GDGCHC 1 cut(s) 296
MluCI AATT 6 cut(s) 128, 326, 689, 810, 1131, 1138
MlyI GAGTC 4 cut(s) 259, 331, 771, 1358
MroXI GAANNNNTTC 2 cut(s) 693, 810
MspA1I CMGCKG 3 cut(s) 416, 562, 725
MspI CCGG 6 cut(s) 53, 420, 453, 780, 858, 918
MspR9I CCNGG 2 cut(s) 1025, 1272
MunI CAATTG 1 cut(s) 326
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 2 cut(s) 1025, 1272
MwoI GCNNNNNNNGC 8 cut(s) 22, 188, 416, 449, 719, 734, 965, 968
NlaIII CATG 6 cut(s) 635, 722, 833, 874, 1084, 1510
NlaIV GGNNCC 5 cut(s) 478, 1086, 1189, 1249, 1324
NmeAIII GCCGAG 1 cut(s) 273
NspI RCATGY 3 cut(s) 722, 833, 874
NspV TTCGAA 1 cut(s) 1064
PciI ACATGT 1 cut(s) 829
PctI GAATGC 1 cut(s) 1072
PdmI GAANNNNTTC 2 cut(s) 693, 810
PfeI GAWTC 3 cut(s) 586, 776, 908
PinAI ACCGGT 1 cut(s) 917
PleI GAGTC 4 cut(s) 258, 331, 770, 1358
PpsI GAGTC 4 cut(s) 258, 331, 770, 1358
PpuMI RGGWCCY 1 cut(s) 623
PscI ACATGT 1 cut(s) 829
Psp5II RGGWCCY 1 cut(s) 623
Psp6I CCWGG 2 cut(s) 1023, 1270
PspGI CCWGG 2 cut(s) 1023, 1270
PspN4I GGNNCC 5 cut(s) 478, 1086, 1189, 1249, 1324
PspPI GGNCC 3 cut(s) 76, 166, 623
PspPPI RGGWCCY 1 cut(s) 623
PstI CTGCAG 3 cut(s) 21, 567, 730
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 4 cut(s) 152, 527, 1247, 1322
PvuII CAGCTG 3 cut(s) 416, 562, 725
RsaI GTAC 9 cut(s) 59, 652, 788, 834, 1269, 1281, 1351, 1396, 1422
RsaNI GTAC 9 cut(s) 58, 651, 787, 833, 1268, 1280, 1350, 1395, 1421
SalI GTCGAC 1 cut(s) 140
Sau96I GGNCC 3 cut(s) 76, 166, 623
SchI GAGTC 4 cut(s) 259, 331, 771, 1358
ScrFI CCNGG 2 cut(s) 1025, 1272
SduI GDGCHC 1 cut(s) 296
SfaNI GCATC 1 cut(s) 700
SfcI CTRYAG 4 cut(s) 17, 563, 726, 841
SfuI TTCGAA 1 cut(s) 1064
SinI GGWCC 1 cut(s) 623
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 6 cut(s) 128, 326, 689, 810, 1131, 1138
SsiI CCGC 6 cut(s) 180, 213, 220, 270, 616, 636
SspMI CTAG 2 cut(s) 183, 1149
StyD4I CCNGG 2 cut(s) 1023, 1270
TaaI ACNGT 9 cut(s) 109, 139, 448, 655, 703, 892, 1210, 1237, 1267
TaiI ACGT 1 cut(s) 1297
TaqI TCGA 9 cut(s) 11, 81, 141, 195, 234, 663, 1064, 1331, 1436
TaqII GACCGA 1 cut(s) 1529
TasI AATT 6 cut(s) 128, 326, 689, 810, 1131, 1138
TatI WGTACW 7 cut(s) 57, 650, 786, 1279, 1349, 1394, 1420
TauI GCSGC 2 cut(s) 182, 638
TfiI GAWTC 3 cut(s) 586, 776, 908
TspDTI ATGAA 2 cut(s) 1497, 1523
TspGWI ACGGA 1 cut(s) 1444
VpaK11BI GGWCC 1 cut(s) 623
XapI RAATTY 3 cut(s) 128, 689, 1138
XceI RCATGY 3 cut(s) 722, 833, 874
XmiI GTMKAC 4 cut(s) 141, 538, 603, 1202
XmnI GAANNNNTTC 2 cut(s) 693, 810
XspI CTAG 2 cut(s) 183, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.