Rw2G026390

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001836
Physical Location & Seq
Reverse (-)
40649737 .. 40654930
5194 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026390.1

Sequence Viewer

Length: 1035 bp
ATGTTCAAGTCGAAGCTGCAGGAGCTGTGCCAGAAGAAGGCGTGGCCGTTACCGGAGTACAGCAGCAACAAGGAGGGCCTCGACCACGACCCTCGTTTCTCAGCCACCGTCAAAATCAACGGCCGTGAATTCAACACTGTCGACCCCTTCAGATCCTCCAAGTTGGCCCAAAACGACGCCGCTAGGCTCGCCTTCGATCACTTCTCTGCCCCCGCTACCCGCCCCATTCCTTTCGATTTCCCTCAGCCGAGTCTTGTCGCTATCGCTCCCGCTCCCACTCCCTCGGGACTTCCCACAGGACTGGGCACTGATTGGAGTTTTACAAACACACCACTGCAATTGCAAAAGACTCAAGAAACACATCAACCTCCTCAGGTCAGTGGTAATGCAACAGTTGCCGGTTCTCAGGTCAGTGCAACAGGTTCCAGTTCTCAGATCAGTGGCAGAGCATTAGGTGTTGAAGGTGATAATAGATCTAAAGGTATACAACATTTGCATAAGAACCAGCTGCAGCGTTATGCTCACAAGAGGAATCTCATTTTACCTGTCTACTCTTGTGAGCGGGAAGGTCCTCCTCATGCAGCTCGTTTCAAATGTACAGTAACAATCGATGGAAAAACTTATCAGGGTCAAGAATTTCTTCCCACTGTGAAGGATGCTGAACATGCAGCTGCAGAAGTTGCTTTGATCTCCCTGTTGCCAAATGGAGTCCAAGAAGATGATTCCGGTTTGTACAAGAACCTTTTACAAGAACTAATTCAAAAAGAAGGTCAACATGTACCACTCTATAGCACAAGGACATCCGGTGAACCTCACATGCTTACTTTTGTTTCAACCGTGGAGATTGGAGGAGAATCTTTTACCGGTCAAGTAGCAAGAAGCAAGAAGCTGGCAGAAGTGAGTGCAGCAAAGGCTGCCTATAATACTTTGAGAGATCGTAAGTCAAGTCCGATCCCGTTGTTTCTGACCCAGGCTTCACAAGGGCAAGGGATTGCAGTTCTTATCTTCGAATGCTCCATCATACATGGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0098586 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

344

Amino Acids

37.38

Weight (kDa)

8.57

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 3 - 65 4.3e-12 Double-stranded RNA binding motif
dsrm PF00035 167 - 231 9.3e-15 Double-stranded RNA binding motif
dsrm PF00035 245 - 310 3.1e-14 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 272, 562
AccI GTMKAC 3 cut(s) 141, 484, 549
AciI CCGC 5 cut(s) 180, 213, 220, 270, 562
AclWI GGATC 2 cut(s) 147, 946
AcoI YGGCCR 2 cut(s) 44, 121
AcsI RAATTY 2 cut(s) 128, 635
AcuI CTGAAG 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 4 cut(s) 59, 598, 734, 780
AfiI CCNNNNNNNGG 1 cut(s) 37
AflIII ACRYGT 1 cut(s) 775
AgeI ACCGGT 1 cut(s) 863
AgsI TTSAA 6 cut(s) 7, 133, 461, 592, 761, 834
AjnI CCWGG 1 cut(s) 969
AluBI AGCT 6 cut(s) 16, 25, 508, 584, 671, 889
AluI AGCT 6 cut(s) 16, 25, 508, 584, 671, 889
AlwI GGATC 2 cut(s) 147, 946
AlwNI CAGNNNCTG 1 cut(s) 25
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 4 cut(s) 44, 76, 121, 165
ApeKI GCWGC 9 cut(s) 16, 63, 508, 511, 581, 668, 671, 905, 914
ApoI RAATTY 2 cut(s) 128, 635
ArsI GACNNNNNNTTYG 2 cut(s) 754, 786
AsiGI ACCGGT 1 cut(s) 863
Asp700I GAANNNNTTC 2 cut(s) 639, 756
AspS9I GGNCC 3 cut(s) 76, 166, 569
AsuHPI GGTGA 2 cut(s) 476, 818
AsuII TTCGAA 1 cut(s) 1008
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 1 cut(s) 569
AxyI CCTNAGG 1 cut(s) 372
BaeGI GKGCMC 1 cut(s) 308
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 9 cut(s) 3, 75, 495, 523, 593, 658, 680, 901, 917
BccI CCATC 2 cut(s) 605, 1025
BceAI ACGGC 3 cut(s) 31, 108, 136
BciT130I CCWGG 1 cut(s) 971
BfaI CTAG 1 cut(s) 183
BfmI CTRYAG 4 cut(s) 17, 509, 672, 787
BglII AGATCT 1 cut(s) 473
Bme1390I CCNGG 1 cut(s) 971
Bme18I GGWCC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 76, 166, 569
BmiI GGNNCC 2 cut(s) 424, 1030
BmrFI CCNGG 1 cut(s) 971
BmrI ACTGGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 646
BmuI ACTGGG 1 cut(s) 311
Bpu10I CCTNAGC 1 cut(s) 243
Bpu14I TTCGAA 1 cut(s) 1008
BpuEI CTTGAG 1 cut(s) 336
Bsa29I ATCGAT 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 282, 837, 969
BsaWI WCCGGW 4 cut(s) 52, 725, 803, 863
Bsc4I CCNNNNNNNGG 1 cut(s) 37
Bse118I RCCGGY 2 cut(s) 398, 863
Bse1I ACTGG 2 cut(s) 306, 426
Bse21I CCTNAGG 1 cut(s) 372
BseBI CCWGG 1 cut(s) 971
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 3 cut(s) 282, 837, 969
BseGI GGATG 2 cut(s) 661, 800
BseLI CCNNNNNNNGG 1 cut(s) 37
BseMII CTCAG 5 cut(s) 114, 257, 386, 419, 446
BseNI ACTGG 2 cut(s) 306, 426
BseRI GAGGAG 3 cut(s) 360, 564, 864
BseSI GKGCMC 1 cut(s) 308
BseX3I CGGCCG 1 cut(s) 121
BseXI GCAGC 9 cut(s) 3, 75, 495, 523, 593, 658, 680, 901, 917
BsgI GTGCAG 1 cut(s) 924
Bsh1285I CGRYCG 1 cut(s) 124
BshFI GGCC 4 cut(s) 46, 78, 123, 167
BshTI ACCGGT 1 cut(s) 863
BshVI ATCGAT 1 cut(s) 609
BsiEI CGRYCG 1 cut(s) 124
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 5 cut(s) 53, 399, 726, 804, 864
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 300
BsmI GAATGC 1 cut(s) 1016
BsnI GGCC 4 cut(s) 46, 78, 123, 167
BsoBI CYCGRG 1 cut(s) 283
Bsp119I TTCGAA 1 cut(s) 1008
Bsp1286I GDGCHC 1 cut(s) 308
Bsp1407I TGTACA 2 cut(s) 596, 732
Bsp143I GATC 7 cut(s) 152, 196, 435, 473, 687, 934, 951
BspACI CCGC 5 cut(s) 180, 213, 220, 270, 562
BspANI GGCC 4 cut(s) 46, 78, 123, 167
BspCNI CTCAG 5 cut(s) 113, 256, 385, 418, 445
BspDI ATCGAT 1 cut(s) 609
BspLI GGNNCC 2 cut(s) 424, 1030
BspMAI CTGCAG 3 cut(s) 21, 513, 676
BspPI GGATC 2 cut(s) 147, 946
BspT104I TTCGAA 1 cut(s) 1008
BsrBI CCGCTC 2 cut(s) 272, 562
BsrFI RCCGGY 2 cut(s) 398, 863
BsrGI TGTACA 2 cut(s) 596, 732
BsrI ACTGG 2 cut(s) 306, 426
BssAI RCCGGY 2 cut(s) 398, 863
BssECI CCNNGG 3 cut(s) 282, 837, 969
BssMI GATC 7 cut(s) 152, 196, 435, 473, 687, 934, 951
BssNAI GTATAC 1 cut(s) 485
BssNI GRCGYC 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 485
Bst2UI CCWGG 1 cut(s) 971
Bst4CI ACNGT 6 cut(s) 109, 139, 394, 601, 649, 838
BstACI GRCGYC 1 cut(s) 177
BstAPI GCANNNNNTGC 3 cut(s) 395, 680, 914
BstAUI TGTACA 2 cut(s) 596, 732
BstBI TTCGAA 1 cut(s) 1008
BstC8I GCNNGC 2 cut(s) 189, 891
BstDEI CTNAG 5 cut(s) 100, 243, 372, 405, 432
BstDSI CCRYGG 1 cut(s) 837
BstF5I GGATG 2 cut(s) 661, 800
BstKTI GATC 7 cut(s) 155, 199, 438, 476, 690, 937, 954
BstMBI GATC 7 cut(s) 152, 196, 435, 473, 687, 934, 951
BstMCI CGRYCG 1 cut(s) 124
BstMWI GCNNNNNNNGC 7 cut(s) 22, 188, 395, 665, 680, 911, 914
BstNI CCWGG 1 cut(s) 971
BstNSI RCATGY 3 cut(s) 668, 779, 820
BstSCI CCNGG 1 cut(s) 969
BstSFI CTRYAG 4 cut(s) 17, 509, 672, 787
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 9 cut(s) 3, 75, 495, 523, 593, 658, 680, 901, 917
BstX2I RGATCY 2 cut(s) 152, 473
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 2 cut(s) 152, 473
BstZ17I GTATAC 1 cut(s) 485
BstZI CGGCCG 1 cut(s) 121
Bsu15I ATCGAT 1 cut(s) 609
Bsu36I CCTNAGG 1 cut(s) 372
BsuRI GGCC 4 cut(s) 46, 78, 123, 167
BsuTUI ATCGAT 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 837
BtsCI GGATG 2 cut(s) 661, 800
BtsI GCAGTG 1 cut(s) 332
BtsIMutI CAGTG 7 cut(s) 135, 306, 332, 385, 418, 445, 645
Cac8I GCNNGC 2 cut(s) 189, 891
CaiI CAGNNNCTG 1 cut(s) 25
Cfr10I RCCGGY 2 cut(s) 398, 863
Cfr13I GGNCC 3 cut(s) 76, 166, 569
ClaI ATCGAT 1 cut(s) 609
CseI GACGC 1 cut(s) 185
Csp6I GTAC 4 cut(s) 58, 597, 733, 779
CspAI ACCGGT 1 cut(s) 863
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CviAII CATG 5 cut(s) 578, 665, 776, 817, 1025
CviQI GTAC 4 cut(s) 58, 597, 733, 779
DdeI CTNAG 5 cut(s) 100, 243, 372, 405, 432
DpnI GATC 7 cut(s) 154, 198, 437, 475, 689, 936, 953
DpnII GATC 7 cut(s) 152, 196, 435, 473, 687, 934, 951
EaeI YGGCCR 2 cut(s) 44, 121
EagI CGGCCG 1 cut(s) 121
EclXI CGGCCG 1 cut(s) 121
Eco47I GGWCC 1 cut(s) 569
Eco52I CGGCCG 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 133
Eco81I CCTNAGG 1 cut(s) 372
Eco88I CYCGRG 1 cut(s) 283
EcoO109I RGGNCCY 2 cut(s) 76, 569
EcoRI GAATTC 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 969
FaeI CATG 5 cut(s) 581, 668, 779, 820, 1028
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FaqI GGGAC 1 cut(s) 300
FatI CATG 5 cut(s) 577, 664, 775, 816, 1024
FauI CCCGC 4 cut(s) 220, 227, 277, 555
FblI GTMKAC 3 cut(s) 141, 484, 549
FokI GGATG 2 cut(s) 668, 787
FspBI CTAG 1 cut(s) 183
HaeIII GGCC 4 cut(s) 46, 78, 123, 167
HapII CCGG 5 cut(s) 53, 399, 726, 804, 864
HgaI GACGC 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 5 cut(s) 581, 668, 779, 820, 1028
HincII GTYRAC 2 cut(s) 142, 773
HindII GTYRAC 2 cut(s) 142, 773
HinfI GANTC 6 cut(s) 250, 349, 532, 708, 722, 854
HpaII CCGG 5 cut(s) 53, 399, 726, 804, 864
HphI GGTGA 2 cut(s) 476, 818
Hpy166II GTNNAC 5 cut(s) 142, 485, 550, 773, 809
Hpy188I TCNGA 4 cut(s) 152, 435, 951, 966
Hpy188III TCNNGA 4 cut(s) 285, 353, 632, 1032
Hpy8I GTNNAC 5 cut(s) 142, 485, 550, 773, 809
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 7 cut(s) 31, 157, 202, 455, 560, 646, 761
HpyCH4III ACNGT 6 cut(s) 109, 139, 394, 601, 649, 838
HpyF10VI GCNNNNNNNGC 7 cut(s) 22, 188, 395, 665, 680, 911, 914
HpyF3I CTNAG 5 cut(s) 100, 243, 372, 405, 432
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 5 cut(s) 581, 668, 779, 820, 1028
Kzo9I GATC 7 cut(s) 152, 196, 435, 473, 687, 934, 951
LmnI GCTCC 5 cut(s) 22, 271, 277, 1019, 1034
Lsp1109I GCAGC 9 cut(s) 3, 75, 495, 523, 593, 658, 680, 901, 917
LweI GCATC 1 cut(s) 646
MaeI CTAG 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 48, 601
MalI GATC 7 cut(s) 154, 198, 437, 475, 689, 936, 953
MbiI CCGCTC 2 cut(s) 272, 562
MboI GATC 7 cut(s) 152, 196, 435, 473, 687, 934, 951
MboII GAAGA 4 cut(s) 46, 632, 728, 997
MfeI CAATTG 1 cut(s) 338
MflI RGATCY 2 cut(s) 152, 473
MhlI GDGCHC 1 cut(s) 308
MluCI AATT 4 cut(s) 128, 338, 635, 756
MlyI GAGTC 3 cut(s) 259, 343, 717
MroXI GAANNNNTTC 2 cut(s) 639, 756
MspA1I CMGCKG 2 cut(s) 508, 671
MspI CCGG 5 cut(s) 53, 399, 726, 804, 864
MspR9I CCNGG 1 cut(s) 971
MunI CAATTG 1 cut(s) 338
Mva1269I GAATGC 1 cut(s) 1016
MvaI CCWGG 1 cut(s) 971
MwoI GCNNNNNNNGC 7 cut(s) 22, 188, 395, 665, 680, 911, 914
NdeII GATC 7 cut(s) 152, 196, 435, 473, 687, 934, 951
NlaIII CATG 5 cut(s) 581, 668, 779, 820, 1028
NlaIV GGNNCC 2 cut(s) 424, 1030
NmeAIII GCCGAG 1 cut(s) 273
NspI RCATGY 3 cut(s) 668, 779, 820
NspV TTCGAA 1 cut(s) 1008
PciI ACATGT 1 cut(s) 775
PctI GAATGC 1 cut(s) 1016
PdmI GAANNNNTTC 2 cut(s) 639, 756
PfeI GAWTC 3 cut(s) 532, 722, 854
PinAI ACCGGT 1 cut(s) 863
PleI GAGTC 3 cut(s) 258, 343, 716
PpsI GAGTC 3 cut(s) 258, 343, 716
PpuMI RGGWCCY 1 cut(s) 569
PscI ACATGT 1 cut(s) 775
Psp5II RGGWCCY 1 cut(s) 569
Psp6I CCWGG 1 cut(s) 969
PspGI CCWGG 1 cut(s) 969
PspN4I GGNNCC 2 cut(s) 424, 1030
PspPI GGNCC 3 cut(s) 76, 166, 569
PspPPI RGGWCCY 1 cut(s) 569
PstI CTGCAG 3 cut(s) 21, 513, 676
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 2 cut(s) 152, 473
PvuII CAGCTG 2 cut(s) 508, 671
RsaI GTAC 4 cut(s) 59, 598, 734, 780
RsaNI GTAC 4 cut(s) 58, 597, 733, 779
SalI GTCGAC 1 cut(s) 140
Sau3AI GATC 7 cut(s) 152, 196, 435, 473, 687, 934, 951
Sau96I GGNCC 3 cut(s) 76, 166, 569
SchI GAGTC 3 cut(s) 259, 343, 717
ScrFI CCNGG 1 cut(s) 971
SduI GDGCHC 1 cut(s) 308
SfaNI GCATC 1 cut(s) 646
SfcI CTRYAG 4 cut(s) 17, 509, 672, 787
SfuI TTCGAA 1 cut(s) 1008
SinI GGWCC 1 cut(s) 569
SmlI CTYRAG 1 cut(s) 351
SmoI CTYRAG 1 cut(s) 351
Sse9I AATT 4 cut(s) 128, 338, 635, 756
SsiI CCGC 5 cut(s) 180, 213, 220, 270, 562
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 969
TaaI ACNGT 6 cut(s) 109, 139, 394, 601, 649, 838
TaqI TCGA 7 cut(s) 11, 81, 141, 195, 234, 609, 1008
TasI AATT 4 cut(s) 128, 338, 635, 756
TatI WGTACW 3 cut(s) 57, 596, 732
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 3 cut(s) 532, 722, 854
TscAI CASTG 7 cut(s) 142, 313, 339, 385, 418, 445, 652
TseI GCWGC 9 cut(s) 16, 63, 508, 511, 581, 668, 671, 905, 914
TspRI CASTG 7 cut(s) 142, 313, 339, 385, 418, 445, 652
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 2 cut(s) 128, 635
XceI RCATGY 3 cut(s) 668, 779, 820
XmiI GTMKAC 3 cut(s) 141, 484, 549
XmnI GAANNNNTTC 2 cut(s) 639, 756
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.