Prupe.3G134100_v2.0.a1

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001836
Physical Location & Seq
Reverse (-)
14007728 .. 14013200
5473 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G134100.1

Sequence Viewer

Length: 1443 bp
ATGTACAAGTCGAAGCTGCAAGAGCTGTGCCAGCAGAGGAAATGGCGCTTGCCCGAGTACAACGCCACAAAGCTTGGCCTCGACCACAACCCTCGCTTCTCAGCCTCCGTCACCATAAACGGCGTCGCCTTCGACACGGTGCAACTCTTCAGGTCCTCCAAGGAAGCCCAAAACGACGCTGCTAGACTTGCCTTCGCTCACTTCACTGATCCGCAACCCAGACATACCAATCGCATTCCCAGCCCTTCCTCATTCCCTCAACCTTCTCTTCCCGCTTCCTCAGCACTTCCTTCAACAGCGGGCACCAATTTGACTGGTACACATGACACAAAACAGACATTGCAACCAAAGATTCAAGAAACACATGAAACTTCTTACGTGCCAGTTCAGTTCAGTGGTATAGCATCAGGTGGCAATTCTCAGGCGAATGGCAGCACATCGAGTATTGAAGATGGTAATCGATTGAGAGATATACAGCATTTATACAAGAACCAACTGCAGACTTATGCACAAAAGAGAAATCTTCTTCTACCTGTGTACAGTTGTGAGCGGGAAGGTCTGCCTCATGCCAATCGTTTCAAGTGTACGGTAACAGTTGATGAACATACCTATGAGGGTCCAGAGTTTCTTCCTACAATGAAGGAAGCTGAACATGCAGTTGCAAAAGTTGCTTTGATGTCCCTGTTGCCAAATGGAGTACAAGAGGATGATATCGTTTTATACAAAAACGTTTTACAAGAATTAATCCAGAAAGAAGGTTTTTCTATGCCAGTCTATAGCACAAAGAATTCTGGCGAAGTTCATATGCCAATTTTTGTTTCAACTGTGGAGATAGAAGGAGAAACTTTTACAGGTTCAGAAGCAAGAAGCAAGAAGCAGGCAGAGATGAGTGCGGCAAAGGTCGCTTACCATACCTTGAGAGAGCGTAAGTCAAGTAAGATCCCTTTGGTCCTGCCCCCTGCTCAGAAGGGGCTAGAAGCGCCAGATATCTTATCTTCAAGCTTTCAGTCAAACCTAGCTACTGATTTACAACAAGTTAGGCCTAACGCCCCCATGATCATAAGTCCGAGTACGATTACTGGGGATCAGACGATGGAGAATAGTGTAACTGCAGAAGGAAACAGTCATCATCCTACCACAGTATCTTCACGACCTGATGCTCTTACGACAAGCAGTGGATTCTCTTCTTTTGACATTCTGTATGGCCGTTCTCAAGAGTCAAACAATTATAGCCTCTCTCTGTCCCAAAATGGCTCTACTTCAACTTTTCCTTCTGTTGGCTCCACTAACTTAGCTATGGACTCTACTCTTGAGCCACCAGCTAAAAGGAGCATGTATAACAAGGTTTCTGTTTATCCATACAAGTCGGATATGAAATTTCCTGAGGGAATCACTGTGCTGCCCATGAGTGATGGAAAATGGGTTGCTTTGTCGCACACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0098586 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

481

Amino Acids

52.74

Weight (kDa)

6.71

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccBSI CCGCTC 1 cut(s) 550
AciI CCGC 5 cut(s) 212, 273, 299, 550, 893
AclI AACGTT 1 cut(s) 729
AclWI GGATC 3 cut(s) 203, 934, 1092
AcoI YGGCCR 1 cut(s) 1204
AcsI RAATTY 2 cut(s) 787, 1376
AcuI CTGAAG 1 cut(s) 133
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 7 cut(s) 5, 59, 319, 539, 586, 699, 1072
AfiI CCNNNNNNNGG 1 cut(s) 1277
AgsI TTSAA 7 cut(s) 294, 356, 449, 580, 822, 999, 1263
AjuI GAANNNNNNNTTGG 2 cut(s) 802, 834
AluBI AGCT 8 cut(s) 16, 25, 73, 647, 1002, 1019, 1295, 1322
AluI AGCT 8 cut(s) 16, 25, 73, 647, 1002, 1019, 1295, 1322
AlwI GGATC 3 cut(s) 203, 934, 1092
Ama87I CYCGRG 1 cut(s) 53
AoxI GGCC 3 cut(s) 76, 1040, 1204
ApeKI GCWGC 4 cut(s) 16, 179, 432, 1399
ApoI RAATTY 2 cut(s) 787, 1376
AseI ATTAAT 1 cut(s) 743
AspLEI GCGC 2 cut(s) 48, 982
AspS9I GGNCC 3 cut(s) 153, 617, 949
AsuHPI GGTGA 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 53
AvaII GGWCC 3 cut(s) 153, 617, 949
AxyI CCTNAGG 1 cut(s) 1383
BaeGI GKGCMC 1 cut(s) 305
BaeI ACNNNNGTAYC 2 cut(s) 1125, 1158
BanI GGYRCC 1 cut(s) 302
BbvCI CCTCAGC 1 cut(s) 280
BbvI GCAGC 4 cut(s) 3, 166, 444, 1386
BccI CCATC 3 cut(s) 446, 1087, 1406
BceAI ACGGC 2 cut(s) 136, 1191
BclI TGATCA 1 cut(s) 1056
BfaI CTAG 3 cut(s) 183, 974, 1016
BfmI CTRYAG 3 cut(s) 497, 775, 1110
BfoI RGCGCY 2 cut(s) 49, 983
BisI GCNGC 5 cut(s) 17, 180, 433, 894, 1400
BlsI GCNGC 5 cut(s) 18, 181, 434, 895, 1401
Bme18I GGWCC 3 cut(s) 153, 617, 949
BmeT110I CYCGRG 1 cut(s) 53
BmgT120I GGNCC 3 cut(s) 153, 617, 949
BmiI GGNNCC 3 cut(s) 304, 618, 1282
BmrI ACTGGG 1 cut(s) 1089
BmsI GCATC 2 cut(s) 413, 1147
BmuI ACTGGG 1 cut(s) 1089
Bpu10I CCTNAGC 1 cut(s) 280
BpuEI CTTGAG 3 cut(s) 937, 1197, 1331
Bsa29I ATCGAT 1 cut(s) 460
BsaAI YACGTR 1 cut(s) 379
BsaBI GATNNNNATC 1 cut(s) 456
BsaHI GRCGYC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 1 cut(s) 1277
Bse1I ACTGG 4 cut(s) 319, 383, 770, 1084
Bse21I CCTNAGG 1 cut(s) 1383
Bse3DI GCAATG 1 cut(s) 338
Bse8I GATNNNNATC 1 cut(s) 456
BseCI ATCGAT 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 2 cut(s) 712, 1129
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 1277
BseMI GCAATG 1 cut(s) 338
BseMII CTCAG 5 cut(s) 114, 294, 434, 977, 1374
BseNI ACTGG 4 cut(s) 319, 383, 770, 1084
BseSI GKGCMC 1 cut(s) 305
BseXI GCAGC 4 cut(s) 3, 166, 444, 1386
BseYI CCCAGC 1 cut(s) 239
BshFI GGCC 3 cut(s) 78, 1042, 1206
BshNI GGYRCC 1 cut(s) 302
BshVI ATCGAT 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 53
BslFI GGGAC 2 cut(s) 664, 1228
BslI CCNNNNNNNGG 1 cut(s) 1277
BsmFI GGGAC 2 cut(s) 664, 1228
BsmI GAATGC 1 cut(s) 234
BsnI GGCC 3 cut(s) 78, 1042, 1206
BsoBI CYCGRG 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 305
Bsp1407I TGTACA 2 cut(s) 3, 537
Bsp143I GATC 4 cut(s) 208, 939, 1056, 1084
BspACI CCGC 5 cut(s) 212, 273, 299, 550, 893
BspANI GGCC 3 cut(s) 78, 1042, 1206
BspCNI CTCAG 5 cut(s) 113, 293, 433, 976, 1375
BspDI ATCGAT 1 cut(s) 460
BspLI GGNNCC 3 cut(s) 304, 618, 1282
BspMAI CTGCAG 2 cut(s) 501, 1114
BspPI GGATC 3 cut(s) 203, 934, 1092
BspT107I GGYRCC 1 cut(s) 302
BsrBI CCGCTC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 338
BsrGI TGTACA 2 cut(s) 3, 537
BsrI ACTGG 4 cut(s) 319, 383, 770, 1084
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 4 cut(s) 208, 939, 1056, 1084
BssNI GRCGYC 1 cut(s) 123
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 8 cut(s) 139, 542, 589, 595, 826, 1124, 1141, 1396
Bst6I CTCTTC 3 cut(s) 152, 273, 1189
BstACI GRCGYC 1 cut(s) 123
BstAPI GCANNNNNTGC 1 cut(s) 668
BstAUI TGTACA 2 cut(s) 3, 537
BstBAI YACGTR 1 cut(s) 379
BstC8I GCNNGC 4 cut(s) 32, 50, 301, 879
BstDEI CTNAG 6 cut(s) 100, 280, 420, 963, 1291, 1383
BstF5I GGATG 2 cut(s) 712, 1129
BstH2I RGCGCY 2 cut(s) 49, 983
BstHHI GCGC 2 cut(s) 48, 982
BstKTI GATC 4 cut(s) 211, 942, 1059, 1087
BstMBI GATC 4 cut(s) 208, 939, 1056, 1084
BstMWI GCNNNNNNNGC 9 cut(s) 22, 31, 188, 240, 281, 653, 668, 902, 979
BstNSI RCATGY 2 cut(s) 656, 1336
BstSFI CTRYAG 3 cut(s) 497, 775, 1110
BstSLI GKGCMC 1 cut(s) 305
BstV1I GCAGC 4 cut(s) 3, 166, 444, 1386
BstX2I RGATCY 1 cut(s) 939
BstYI RGATCY 1 cut(s) 939
Bsu15I ATCGAT 1 cut(s) 460
Bsu36I CCTNAGG 1 cut(s) 1383
BsuRI GGCC 3 cut(s) 78, 1042, 1206
BsuTUI ATCGAT 1 cut(s) 460
BtsCI GGATG 2 cut(s) 712, 1129
BtsI GCAGTG 1 cut(s) 1180
BtsIMutI CAGTG 4 cut(s) 204, 400, 1180, 1392
Cac8I GCNNGC 4 cut(s) 32, 50, 301, 879
CfoI GCGC 2 cut(s) 48, 982
Cfr13I GGNCC 3 cut(s) 153, 617, 949
ClaI ATCGAT 1 cut(s) 460
CseI GACGC 2 cut(s) 112, 185
Csp6I GTAC 7 cut(s) 4, 58, 318, 538, 585, 698, 1071
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 7 cut(s) 323, 365, 566, 653, 1054, 1333, 1405
CviQI GTAC 7 cut(s) 4, 58, 318, 538, 585, 698, 1071
DdeI CTNAG 6 cut(s) 100, 280, 420, 963, 1291, 1383
DpnI GATC 4 cut(s) 210, 941, 1058, 1086
DpnII GATC 4 cut(s) 208, 939, 1056, 1084
EaeI YGGCCR 1 cut(s) 1204
Eam1104I CTCTTC 3 cut(s) 152, 273, 1189
EarI CTCTTC 3 cut(s) 152, 273, 1189
Eco130I CCWWGG 1 cut(s) 159
Eco147I AGGCCT 1 cut(s) 1042
Eco32I GATATC 2 cut(s) 712, 988
Eco47I GGWCC 3 cut(s) 153, 617, 949
Eco57I CTGAAG 1 cut(s) 133
Eco81I CCTNAGG 1 cut(s) 1383
Eco88I CYCGRG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 787
EcoRV GATATC 2 cut(s) 712, 988
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 7 cut(s) 326, 368, 569, 656, 1057, 1336, 1408
FaqI GGGAC 2 cut(s) 664, 1228
FatI CATG 7 cut(s) 322, 364, 565, 652, 1053, 1332, 1404
FauI CCCGC 3 cut(s) 280, 292, 543
FauNDI CATATG 1 cut(s) 804
FbaI TGATCA 1 cut(s) 1056
Fnu4HI GCNGC 5 cut(s) 17, 180, 433, 894, 1400
FokI GGATG 2 cut(s) 719, 1116
Fsp4HI GCNGC 5 cut(s) 17, 180, 433, 894, 1400
FspBI CTAG 3 cut(s) 183, 974, 1016
GlaI GCGC 2 cut(s) 47, 981
GluI GCNGC 5 cut(s) 17, 180, 433, 894, 1400
GsaI CCCAGC 1 cut(s) 243
HaeII RGCGCY 2 cut(s) 49, 983
HaeIII GGCC 3 cut(s) 78, 1042, 1206
HgaI GACGC 2 cut(s) 112, 185
HhaI GCGC 2 cut(s) 48, 982
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 7 cut(s) 326, 368, 569, 656, 1057, 1336, 1408
Hin6I GCGC 2 cut(s) 46, 980
HinP1I GCGC 2 cut(s) 46, 980
HindIII AAGCTT 2 cut(s) 71, 1000
HinfI GANTC 5 cut(s) 352, 1179, 1217, 1301, 1389
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 3 cut(s) 320, 538, 585
Hpy188I TCNGA 5 cut(s) 859, 966, 1068, 1089, 1369
Hpy188III TCNNGA 7 cut(s) 356, 620, 748, 1149, 1214, 1310, 1382
Hpy8I GTNNAC 3 cut(s) 320, 538, 585
Hpy99I CGWCG 2 cut(s) 128, 179
HpyCH4III ACNGT 8 cut(s) 139, 542, 589, 595, 826, 1124, 1141, 1396
HpyCH4IV ACGT 2 cut(s) 378, 729
HpyCH4V TGCA 8 cut(s) 19, 142, 343, 499, 509, 656, 662, 1112
HpyF10VI GCNNNNNNNGC 9 cut(s) 22, 31, 188, 240, 281, 653, 668, 902, 979
HpyF3I CTNAG 6 cut(s) 100, 280, 420, 963, 1291, 1383
HpySE526I ACGT 2 cut(s) 378, 729
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 7 cut(s) 326, 368, 569, 656, 1057, 1336, 1408
HspAI GCGC 2 cut(s) 46, 980
Ksp22I TGATCA 1 cut(s) 1056
Kzo9I GATC 4 cut(s) 208, 939, 1056, 1084
LmnI GCTCC 2 cut(s) 1286, 1329
Lsp1109I GCAGC 4 cut(s) 3, 166, 444, 1386
LweI GCATC 2 cut(s) 413, 1147
MaeI CTAG 3 cut(s) 183, 974, 1016
MaeII ACGT 2 cut(s) 378, 729
MaeIII GTNAC 3 cut(s) 109, 589, 1105
MalI GATC 4 cut(s) 210, 941, 1058, 1086
MbiI CCGCTC 1 cut(s) 550
MboI GATC 4 cut(s) 208, 939, 1056, 1084
MboII GAAGA 9 cut(s) 139, 260, 461, 515, 518, 620, 987, 1137, 1176
MflI RGATCY 1 cut(s) 939
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 7 cut(s) 307, 415, 740, 787, 810, 1225, 1376
MlyI GAGTC 2 cut(s) 1226, 1295
MmeI TCCRAC 1 cut(s) 1347
MseI TTAA 1 cut(s) 743
MslI CAYNNNNRTG 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 299
Mva1269I GAATGC 1 cut(s) 234
MwoI GCNNNNNNNGC 9 cut(s) 22, 31, 188, 240, 281, 653, 668, 902, 979
NdeI CATATG 1 cut(s) 804
NdeII GATC 4 cut(s) 208, 939, 1056, 1084
NlaIII CATG 7 cut(s) 326, 368, 569, 656, 1057, 1336, 1408
NlaIV GGNNCC 3 cut(s) 304, 618, 1282
NmuCI GTSAC 1 cut(s) 109
NspI RCATGY 2 cut(s) 656, 1336
PceI AGGCCT 1 cut(s) 1042
PctI GAATGC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 352, 1179, 1389
PkrI GCNGC 5 cut(s) 18, 181, 434, 895, 1401
PleI GAGTC 2 cut(s) 1225, 1295
PpsI GAGTC 2 cut(s) 1225, 1295
Ppu21I YACGTR 1 cut(s) 379
PpuMI RGGWCCY 1 cut(s) 153
PshBI ATTAAT 1 cut(s) 743
Psp1406I AACGTT 1 cut(s) 729
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 239
PspN4I GGNNCC 3 cut(s) 304, 618, 1282
PspPI GGNCC 3 cut(s) 153, 617, 949
PspPPI RGGWCCY 1 cut(s) 153
PstI CTGCAG 2 cut(s) 501, 1114
PsuI RGATCY 1 cut(s) 939
RsaI GTAC 7 cut(s) 5, 59, 319, 539, 586, 699, 1072
RsaNI GTAC 7 cut(s) 4, 58, 318, 538, 585, 698, 1071
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 1 cut(s) 743
SatI GCNGC 5 cut(s) 17, 180, 433, 894, 1400
Sau3AI GATC 4 cut(s) 208, 939, 1056, 1084
Sau96I GGNCC 3 cut(s) 153, 617, 949
SchI GAGTC 2 cut(s) 1226, 1295
SduI GDGCHC 1 cut(s) 305
SfaNI GCATC 2 cut(s) 413, 1147
SfcI CTRYAG 3 cut(s) 497, 775, 1110
SinI GGWCC 3 cut(s) 153, 617, 949
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 3 cut(s) 916, 1212, 1310
SmoI CTYRAG 3 cut(s) 916, 1212, 1310
Sse9I AATT 7 cut(s) 307, 415, 740, 787, 810, 1225, 1376
SseBI AGGCCT 1 cut(s) 1042
SsiI CCGC 5 cut(s) 212, 273, 299, 550, 893
SspMI CTAG 3 cut(s) 183, 974, 1016
StuI AGGCCT 1 cut(s) 1042
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 8 cut(s) 139, 542, 589, 595, 826, 1124, 1141, 1396
TaiI ACGT 2 cut(s) 381, 732
TaqI TCGA 5 cut(s) 11, 81, 132, 440, 460
TasI AATT 7 cut(s) 307, 415, 740, 787, 810, 1225, 1376
TatI WGTACW 4 cut(s) 3, 57, 537, 697
TauI GCSGC 1 cut(s) 896
TfiI GAWTC 3 cut(s) 352, 1179, 1389
Tru1I TTAA 1 cut(s) 743
Tru9I TTAA 1 cut(s) 743
TscAI CASTG 4 cut(s) 211, 400, 1180, 1399
TseFI GTSAC 1 cut(s) 109
TseI GCWGC 4 cut(s) 16, 179, 432, 1399
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 5 cut(s) 381, 615, 653, 791, 1388
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 4 cut(s) 211, 400, 1180, 1399
VpaK11BI GGWCC 3 cut(s) 153, 617, 949
VspI ATTAAT 1 cut(s) 743
XapI RAATTY 2 cut(s) 787, 1376
XceI RCATGY 2 cut(s) 656, 1336
XspI CTAG 3 cut(s) 183, 974, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.