Rorug02G0273200

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001836
Physical Location & Seq
Reverse (-)
29219040 .. 29219471
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0273200.1

Sequence Viewer

Length: 408 bp
ATGGCTTTGAAGAATTTGGTTTTTCTTTCCATGGTGACACTGATCGCATCCCTCATTATGAGTGCAAGTAATGCAACTGCTACTAGGAAAATTTCTGCAGGGATCAAAACGAGCGGTGAAGGCGAAGGCGGGCTAGTGGAATGCGGAAATGCGCTGGTGGAGCTGAAATCTTGCTCGCAAGAGATTGTTGTGTATTTCCTGAATGGGAAGGCTAATATCGGCCCAGACTGTTGCAAAGCTATCGCCACCATTACACGTCACTGCTGGCCTGCAATGCTTACTTCCCTTGGCTTCACTGCAGAACAAGGTCACATCTTACGAGGCTACTGTGATGCTGCGGCTGCTGTGACTACTACTGCTCCTGCTGCGGGGCCACTTGCTCGTACAACACCTCTAATCAGTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0098586 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

135

Amino Acids

13.91

Weight (kDa)

8.2

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prolamin_like PF05617 47 - 111 5e-18 Prolamin-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 114
AciI CCGC 5 cut(s) 114, 129, 144, 338, 368
AclWI GGATC 1 cut(s) 110
AcsI RAATTY 2 cut(s) 13, 90
AfaI GTAC 1 cut(s) 385
AfiI CCNNNNNNNGG 1 cut(s) 368
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 1 cut(s) 10
AjiI CACGTC 1 cut(s) 257
AluBI AGCT 2 cut(s) 163, 239
AluI AGCT 2 cut(s) 163, 239
AlwI GGATC 1 cut(s) 110
AoxI GGCC 3 cut(s) 220, 266, 371
ApeKI GCWGC 3 cut(s) 335, 341, 365
ApoI RAATTY 2 cut(s) 13, 90
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 221, 371
AsuHPI GGTGA 2 cut(s) 46, 128
BbvI GCAGC 3 cut(s) 322, 328, 352
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BfaI CTAG 2 cut(s) 84, 134
BfmI CTRYAG 2 cut(s) 96, 297
BisI GCNGC 4 cut(s) 336, 339, 342, 366
BlsI GCNGC 4 cut(s) 337, 340, 343, 367
BmgBI CACGTC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 221, 371
BmiI GGNNCC 1 cut(s) 372
BmsI GCATC 2 cut(s) 56, 322
BsaJI CCNNGG 2 cut(s) 30, 286
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 368
Bse3DI GCAATG 1 cut(s) 279
BseDI CCNNGG 2 cut(s) 30, 286
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 368
BseMI GCAATG 1 cut(s) 279
BseXI GCAGC 3 cut(s) 322, 328, 352
BshFI GGCC 3 cut(s) 222, 268, 373
BslI CCNNNNNNNGG 1 cut(s) 368
BsmI GAATGC 1 cut(s) 146
BsnI GGCC 3 cut(s) 222, 268, 373
Bsp143I GATC 2 cut(s) 42, 102
Bsp19I CCATGG 1 cut(s) 30
BspACI CCGC 5 cut(s) 114, 129, 144, 338, 368
BspANI GGCC 3 cut(s) 222, 268, 373
BspLI GGNNCC 1 cut(s) 372
BspMAI CTGCAG 2 cut(s) 100, 301
BspPI GGATC 1 cut(s) 110
BsrBI CCGCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 30, 286
BssMI GATC 2 cut(s) 42, 102
BssT1I CCWWGG 2 cut(s) 30, 286
Bst4CI ACNGT 2 cut(s) 230, 329
BstAPI GCANNNNNTGC 1 cut(s) 71
BstC8I GCNNGC 4 cut(s) 131, 176, 266, 270
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 47
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 2 cut(s) 45, 105
BstMBI GATC 2 cut(s) 42, 102
BstMWI GCNNNNNNNGC 6 cut(s) 71, 120, 160, 274, 341, 365
BstSFI CTRYAG 2 cut(s) 96, 297
BstV1I GCAGC 3 cut(s) 322, 328, 352
BsuRI GGCC 3 cut(s) 222, 268, 373
BtgI CCRYGG 1 cut(s) 30
BtrI CACGTC 1 cut(s) 257
BtsCI GGATG 1 cut(s) 47
BtsI GCAGTG 2 cut(s) 259, 294
BtsIMutI CAGTG 3 cut(s) 38, 259, 294
Cac8I GCNNGC 4 cut(s) 131, 176, 266, 270
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 221, 371
Csp6I GTAC 1 cut(s) 384
CviAII CATG 1 cut(s) 31
CviQI GTAC 1 cut(s) 384
DpnI GATC 2 cut(s) 44, 104
DpnII GATC 2 cut(s) 42, 102
Eco130I CCWWGG 2 cut(s) 30, 286
EcoT14I CCWWGG 2 cut(s) 30, 286
ErhI CCWWGG 2 cut(s) 30, 286
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 32, 59
FatI CATG 1 cut(s) 30
FauI CCCGC 2 cut(s) 122, 361
Fnu4HI GCNGC 4 cut(s) 336, 339, 342, 366
FokI GGATG 1 cut(s) 34
Fsp4HI GCNGC 4 cut(s) 336, 339, 342, 366
FspBI CTAG 2 cut(s) 84, 134
GlaI GCGC 1 cut(s) 153
GluI GCNGC 4 cut(s) 336, 339, 342, 366
HaeIII GGCC 3 cut(s) 222, 268, 373
HhaI GCGC 1 cut(s) 154
Hin1II CATG 1 cut(s) 34
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HphI GGTGA 2 cut(s) 46, 128
Hpy188III TCNNGA 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 113, 119, 202
HpyCH4III ACNGT 2 cut(s) 230, 329
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 6 cut(s) 65, 74, 98, 234, 272, 299
HpyF10VI GCNNNNNNNGC 6 cut(s) 71, 120, 160, 274, 341, 365
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 1 cut(s) 34
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 2 cut(s) 42, 102
LmnI GCTCC 2 cut(s) 160, 364
LpnPI CCDG 7 cut(s) 84, 140, 212, 237, 250, 282, 375
Lsp1109I GCAGC 3 cut(s) 322, 328, 352
LweI GCATC 2 cut(s) 56, 322
MaeI CTAG 2 cut(s) 84, 134
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 4 cut(s) 34, 257, 308, 346
MalI GATC 2 cut(s) 44, 104
MbiI CCGCTC 1 cut(s) 114
MboI GATC 2 cut(s) 42, 102
MboII GAAGA 1 cut(s) 22
MluCI AATT 2 cut(s) 13, 90
MnlI CCTC 3 cut(s) 62, 314, 402
Mva1269I GAATGC 1 cut(s) 146
MwoI GCNNNNNNNGC 6 cut(s) 71, 120, 160, 274, 341, 365
NcoI CCATGG 1 cut(s) 30
NdeII GATC 2 cut(s) 42, 102
NlaIII CATG 1 cut(s) 34
NlaIV GGNNCC 1 cut(s) 372
NmuCI GTSAC 4 cut(s) 34, 257, 308, 346
PctI GAATGC 1 cut(s) 146
PkrI GCNGC 4 cut(s) 337, 340, 343, 367
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 2 cut(s) 221, 371
PstI CTGCAG 2 cut(s) 100, 301
RsaI GTAC 1 cut(s) 385
RsaNI GTAC 1 cut(s) 384
SatI GCNGC 4 cut(s) 336, 339, 342, 366
Sau3AI GATC 2 cut(s) 42, 102
Sau96I GGNCC 2 cut(s) 221, 371
SetI ASST 5 cut(s) 165, 241, 259, 310, 394
SfaNI GCATC 2 cut(s) 56, 322
SfcI CTRYAG 2 cut(s) 96, 297
Sse9I AATT 2 cut(s) 13, 90
SsiI CCGC 5 cut(s) 114, 129, 144, 338, 368
SspMI CTAG 2 cut(s) 84, 134
StyI CCWWGG 2 cut(s) 30, 286
TaaI ACNGT 2 cut(s) 230, 329
TaiI ACGT 1 cut(s) 259
TasI AATT 2 cut(s) 13, 90
TauI GCSGC 1 cut(s) 341
TscAI CASTG 3 cut(s) 45, 266, 301
TseFI GTSAC 4 cut(s) 34, 257, 308, 346
TseI GCWGC 3 cut(s) 335, 341, 365
Tsp45I GTSAC 4 cut(s) 34, 257, 308, 346
TspRI CASTG 3 cut(s) 45, 266, 301
XapI RAATTY 2 cut(s) 13, 90
XspI CTAG 2 cut(s) 84, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.