Rorug02G0273400

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001836
Physical Location & Seq
Forward (+)
29225905 .. 29226303
399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0273400.1

Sequence Viewer

Length: 399 bp
ATGTTTAGGTACCCCTGGAACCTAGTATTTGGAAACTTAAGCAAGCAAAACATCACGGTAGCTGGTGATGCCATGCACCCCATGACCCCTGATCTAGCACAAGGGGGTTGCTCAGCATTAGAAGATGCGGTGATCTTAGGCAGGCATATCGGGACTTCTTTTGTACAGAATGGACAAGTACTTGTGCCGAAAAAGATGAGTGAAGTACTGGGAAAATATGTAGAAGAAAGAAGGTGGCGCGTCGCTTTGTTGATCACGGGGTCATATATATCTGGATGGGTGCAGCAGGGAGGATCTGGATGGGGTATGAAATTCTTAAGAGACTCCATATTTTACAAGTTCCTGTTCCTTAAGATGGTTAAATACGTGAACTATGATTGTGGAAAACTCGACTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0098586 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

132

Amino Acids

14.94

Weight (kDa)

9.33

Isoelectric Point (pI)

52.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AccII CGCG 1 cut(s) 240
AciI CCGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 301
AcsI RAATTY 1 cut(s) 311
AfaI GTAC 4 cut(s) 11, 165, 180, 207
AfiI CCNNNNNNNGG 1 cut(s) 355
AflII CTTAAG 3 cut(s) 37, 316, 350
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 315
AlwI GGATC 1 cut(s) 301
ApeKI GCWGC 1 cut(s) 283
ApoI RAATTY 1 cut(s) 311
Asp718I GGTACC 1 cut(s) 9
AspLEI GCGC 1 cut(s) 240
AsuHPI GGTGA 2 cut(s) 77, 142
BanI GGYRCC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 295
BccI CCATC 3 cut(s) 270, 294, 349
BcgI CGANNNNNNTGC 2 cut(s) 130, 164
BciT130I CCWGG 1 cut(s) 16
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 3 cut(s) 23, 95, 397
BfrI CTTAAG 3 cut(s) 37, 316, 350
BisI GCNGC 1 cut(s) 284
BlpI GCTNAGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 285
BmcAI AGTACT 2 cut(s) 180, 207
Bme1390I CCNGG 1 cut(s) 16
BmiI GGNNCC 2 cut(s) 11, 20
BmrFI CCNGG 1 cut(s) 16
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 58, 115
BmuI ACTGGG 1 cut(s) 218
Bpu1102I GCTNAGC 1 cut(s) 112
BsaAI YACGTR 1 cut(s) 367
BsaJI CCNNGG 1 cut(s) 14
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 16
BseDI CCNNGG 1 cut(s) 14
BseGI GGATG 2 cut(s) 281, 305
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 295
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 240
BshNI GGYRCC 1 cut(s) 9
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 166
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 4 cut(s) 91, 132, 252, 293
Bsp1720I GCTNAGC 1 cut(s) 112
BspACI CCGC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 125
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 2 cut(s) 11, 20
BspPI GGATC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 9
BspTI CTTAAG 3 cut(s) 37, 316, 350
BsrGI TGTACA 1 cut(s) 163
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 1 cut(s) 14
BssMI GATC 4 cut(s) 91, 132, 252, 293
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 58
BstAFI CTTAAG 3 cut(s) 37, 316, 350
BstAUI TGTACA 1 cut(s) 163
BstBAI YACGTR 1 cut(s) 367
BstC8I GCNNGC 2 cut(s) 44, 143
BstDEI CTNAG 2 cut(s) 112, 136
BstF5I GGATG 2 cut(s) 281, 305
BstFNI CGCG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 4 cut(s) 94, 135, 255, 296
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 4 cut(s) 91, 132, 252, 293
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 1 cut(s) 14
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 1 cut(s) 295
BstX2I RGATCY 1 cut(s) 293
BstYI RGATCY 1 cut(s) 293
BtsCI GGATG 2 cut(s) 281, 305
Cac8I GCNNGC 2 cut(s) 44, 143
CfoI GCGC 1 cut(s) 240
CseI GACGC 1 cut(s) 229
Csp6I GTAC 4 cut(s) 10, 164, 179, 206
CviAII CATG 2 cut(s) 73, 82
CviJI RGCY 1 cut(s) 62
CviKI_1 RGCY 1 cut(s) 62
CviQI GTAC 4 cut(s) 10, 164, 179, 206
DdeI CTNAG 2 cut(s) 112, 136
DpnI GATC 4 cut(s) 93, 134, 254, 295
DpnII GATC 4 cut(s) 91, 132, 252, 293
EcoRII CCWGG 1 cut(s) 14
FaeI CATG 2 cut(s) 76, 85
FaqI GGGAC 1 cut(s) 166
FatI CATG 2 cut(s) 72, 81
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 284
FokI GGATG 2 cut(s) 288, 312
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 3 cut(s) 23, 95, 397
GlaI GCGC 1 cut(s) 239
GluI GCNGC 1 cut(s) 284
HgaI GACGC 1 cut(s) 229
HhaI GCGC 1 cut(s) 240
Hin1II CATG 2 cut(s) 76, 85
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HinfI GANTC 1 cut(s) 323
HphI GGTGA 2 cut(s) 77, 142
Hpy166II GTNNAC 1 cut(s) 370
Hpy188III TCNNGA 3 cut(s) 151, 273, 297
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 225
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 2 cut(s) 76, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 2 cut(s) 112, 136
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 2 cut(s) 76, 85
HspAI GCGC 1 cut(s) 238
KpnI GGTACC 1 cut(s) 13
Ksp22I TGATCA 1 cut(s) 252
Kzo9I GATC 4 cut(s) 91, 132, 252, 293
LpnPI CCDG 9 cut(s) 28, 48, 102, 127, 194, 258, 272, 282, 356
Lsp1109I GCAGC 1 cut(s) 295
LweI GCATC 2 cut(s) 58, 115
MaeI CTAG 3 cut(s) 23, 95, 397
MaeII ACGT 1 cut(s) 366
MalI GATC 4 cut(s) 93, 134, 254, 295
MboI GATC 4 cut(s) 91, 132, 252, 293
MboII GAAGA 2 cut(s) 134, 236
MflI RGATCY 1 cut(s) 293
MluCI AATT 1 cut(s) 311
MlyI GAGTC 1 cut(s) 317
MnlI CCTC 1 cut(s) 284
MseI TTAA 4 cut(s) 38, 317, 351, 360
MspCI CTTAAG 3 cut(s) 37, 316, 350
MspR9I CCNGG 1 cut(s) 16
MvaI CCWGG 1 cut(s) 16
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 68
NdeII GATC 4 cut(s) 91, 132, 252, 293
NlaIII CATG 2 cut(s) 76, 85
NlaIV GGNNCC 2 cut(s) 11, 20
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 1 cut(s) 317
PpsI GAGTC 1 cut(s) 317
Ppu21I YACGTR 1 cut(s) 367
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PspN4I GGNNCC 2 cut(s) 11, 20
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 4 cut(s) 11, 165, 180, 207
RsaNI GTAC 4 cut(s) 10, 164, 179, 206
SaqAI TTAA 4 cut(s) 38, 317, 351, 360
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 4 cut(s) 91, 132, 252, 293
ScaI AGTACT 2 cut(s) 180, 207
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 1 cut(s) 16
SetI ASST 5 cut(s) 11, 24, 64, 236, 369
SfaNI GCATC 2 cut(s) 58, 115
SmlI CTYRAG 3 cut(s) 37, 316, 350
SmoI CTYRAG 3 cut(s) 37, 316, 350
Sse9I AATT 1 cut(s) 311
SsiI CCGC 1 cut(s) 128
SspMI CTAG 3 cut(s) 23, 95, 397
StyD4I CCNGG 1 cut(s) 14
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 369
TaqI TCGA 1 cut(s) 390
TasI AATT 1 cut(s) 311
TatI WGTACW 3 cut(s) 163, 178, 205
Tru1I TTAA 4 cut(s) 38, 317, 351, 360
Tru9I TTAA 4 cut(s) 38, 317, 351, 360
TseI GCWGC 1 cut(s) 283
TspDTI ATGAA 1 cut(s) 323
Vha464I CTTAAG 3 cut(s) 37, 316, 350
XapI RAATTY 1 cut(s) 311
XspI CTAG 3 cut(s) 23, 95, 397
ZrmI AGTACT 2 cut(s) 180, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.