FvH4_3g27780

Double-stranded RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001836
Physical Location & Seq
Reverse (-)
20816849 .. 20819514
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27780.t1

Sequence Viewer

Length: 642 bp
ATGTGTAGGTTTGTTTCAACCTTGGAGATTGGAGGAGAATACTTTACAGGTGAGGTAGCAAGAAGCAAGAAGCTGGCAGAAGTGAGTGCAGCAAAGGTTGCTTACAACACTCTGAGAGATCGTAAGTTGAGTCATATTCCATTGTTTCCCACCTCGGCTATTGAAGGGCAAGTCTGTTCTGACTTATTATCATCTAAGGCTCCATCAGTTGTAGCGGCTGATCTACAACAACAAATGAGACCCAACACTCCAATTCCAAATTCAGTTAAAAGGGAACCAGAATTGGAGATGAGTGTGGCCACAGTGGGAACCAGTCGTCTGGGGACAACTCCATCTTCGGGAGTTATTAGTATTACTGTTGGATCCACTTTATCTGGTACTGTACATGCCCGTCAACCGGAGACTTCACGTTCTGCTTCTCCTACGCCTCAAAACGGTTCGTTTTCGACTCTGGCTTCTGACTGTAACTCAGATGAGGACTCTACTCTTGAGCCACCAGCGAAGAGATTCTTCTCTAATAAGGTTTCTGTGCATTCACGGATGGCGGCGACACTCCCAGAAGACTGCGTCGTGTTGCCCCTTGGTGATGAAAATTGGGTTGATGTATCGCCCATGAAGTCAGAATGTAGAATGGATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0002252 GO:0002376 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009616 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035821 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044003 GO:0044237 GO:0044238 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0045087 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051607 GO:0051701 GO:0051704 GO:0051707 GO:0051716 GO:0051817 GO:0052018 GO:0052249 GO:0060145 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0098542 GO:0098586 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
dsrm

Protein Analysis

214

Amino Acids

22.84

Weight (kDa)

5.83

Isoelectric Point (pI)

49.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 215, 545
AclWI GGATC 2 cut(s) 357, 370
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 259
AfaI GTAC 2 cut(s) 379, 384
AfiI CCNNNNNNNGG 3 cut(s) 338, 397, 434
AgsI TTSAA 2 cut(s) 18, 164
AjuI GAANNNNNNNTTGG 2 cut(s) 244, 276
AluBI AGCT 1 cut(s) 73
AluI AGCT 1 cut(s) 73
Alw26I GTCTC 2 cut(s) 232, 395
AlwI GGATC 2 cut(s) 357, 370
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 259
Asp700I GAANNNNTTC 1 cut(s) 506
AsuHPI GGTGA 2 cut(s) 62, 596
BalI TGGCCA 1 cut(s) 299
BamHI GGATCC 1 cut(s) 362
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 1 cut(s) 101
BccI CCATC 3 cut(s) 211, 340, 535
BcoDI GTCTC 2 cut(s) 232, 395
BisI GCNGC 3 cut(s) 90, 216, 546
BlsI GCNGC 3 cut(s) 91, 217, 547
BmiI GGNNCC 4 cut(s) 201, 276, 310, 364
BpiI GAAGAC 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 509
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 21, 153, 580
BsaWI WCCGGW 1 cut(s) 397
Bsc4I CCNNNNNNNGG 3 cut(s) 338, 397, 434
Bse1I ACTGG 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 21, 153, 580
BseGI GGATG 1 cut(s) 546
BseLI CCNNNNNNNGG 3 cut(s) 338, 397, 434
BseMII CTCAG 2 cut(s) 104, 483
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 101
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 398
BslFI GGGAC 1 cut(s) 337
BslI CCNNNNNNNGG 3 cut(s) 338, 397, 434
BsmAI GTCTC 2 cut(s) 232, 395
BsmFI GGGAC 1 cut(s) 337
BsmI GAATGC 1 cut(s) 532
BsnI GGCC 1 cut(s) 299
Bso31I GGTCTC 1 cut(s) 232
Bsp1407I TGTACA 1 cut(s) 382
Bsp143I GATC 4 cut(s) 118, 220, 362, 634
BspACI CCGC 2 cut(s) 215, 545
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 2 cut(s) 105, 482
BspLI GGNNCC 4 cut(s) 201, 276, 310, 364
BspPI GGATC 2 cut(s) 357, 370
BspTNI GGTCTC 1 cut(s) 232
BsrGI TGTACA 1 cut(s) 382
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 3 cut(s) 21, 153, 580
BssMI GATC 4 cut(s) 118, 220, 362, 634
BssT1I CCWWGG 2 cut(s) 21, 580
Bst4CI ACNGT 5 cut(s) 304, 358, 382, 437, 464
Bst6I CTCTTC 1 cut(s) 497
BstAPI GCANNNNNTGC 1 cut(s) 98
BstAUI TGTACA 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 113, 195, 469
BstF5I GGATG 1 cut(s) 546
BstKTI GATC 4 cut(s) 121, 223, 365, 637
BstMAI GTCTC 2 cut(s) 232, 395
BstMBI GATC 4 cut(s) 118, 220, 362, 634
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 389
BstV1I GCAGC 1 cut(s) 101
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 1 cut(s) 362
BstXI CCANNNNNNTGG 1 cut(s) 319
BstYI RGATCY 1 cut(s) 362
BsuRI GGCC 1 cut(s) 299
BtsCI GGATG 1 cut(s) 546
BtsIMutI CAGTG 2 cut(s) 309, 637
Cac8I GCNNGC 1 cut(s) 75
CseI GACGC 1 cut(s) 556
Csp6I GTAC 2 cut(s) 378, 383
CviAII CATG 2 cut(s) 386, 613
CviJI RGCY 7 cut(s) 73, 158, 200, 218, 299, 455, 493
CviKI_1 RGCY 7 cut(s) 73, 158, 200, 218, 299, 455, 493
CviQI GTAC 2 cut(s) 378, 383
DdeI CTNAG 3 cut(s) 113, 195, 469
DpnI GATC 4 cut(s) 120, 222, 364, 636
DpnII GATC 4 cut(s) 118, 220, 362, 634
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 497
EarI CTCTTC 1 cut(s) 497
Eco130I CCWWGG 2 cut(s) 21, 580
Eco31I GGTCTC 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 21, 580
ErhI CCWWGG 2 cut(s) 21, 580
FaeI CATG 2 cut(s) 389, 616
FaiI YATR 3 cut(s) 135, 387, 614
FalI AAGNNNNNCTT 2 cut(s) 494, 526
FaqI GGGAC 1 cut(s) 337
FatI CATG 2 cut(s) 385, 612
Fnu4HI GCNGC 3 cut(s) 90, 216, 546
FokI GGATG 1 cut(s) 553
Fsp4HI GCNGC 3 cut(s) 90, 216, 546
GluI GCNGC 3 cut(s) 90, 216, 546
HaeIII GGCC 1 cut(s) 299
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 556
Hin1II CATG 2 cut(s) 389, 616
HincII GTYRAC 1 cut(s) 395
HindII GTYRAC 1 cut(s) 395
HinfI GANTC 4 cut(s) 130, 448, 479, 507
HpaII CCGG 1 cut(s) 398
HphI GGTGA 2 cut(s) 62, 596
Hpy166II GTNNAC 1 cut(s) 395
Hpy188I TCNGA 5 cut(s) 114, 181, 460, 472, 622
Hpy188III TCNNGA 2 cut(s) 339, 488
Hpy8I GTNNAC 1 cut(s) 395
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 1 cut(s) 158
HpyCH4III ACNGT 5 cut(s) 304, 358, 382, 437, 464
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 2 cut(s) 89, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 3 cut(s) 113, 195, 469
HpySE526I ACGT 1 cut(s) 409
Hsp92II CATG 2 cut(s) 389, 616
Kzo9I GATC 4 cut(s) 118, 220, 362, 634
LmnI GCTCC 1 cut(s) 205
Lsp1109I GCAGC 1 cut(s) 101
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 464
MalI GATC 4 cut(s) 120, 222, 364, 636
MboI GATC 4 cut(s) 118, 220, 362, 634
MboII GAAGA 4 cut(s) 327, 502, 514, 572
MflI RGATCY 1 cut(s) 362
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 4 cut(s) 252, 259, 281, 592
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 3 cut(s) 139, 442, 473
MmeI TCCRAC 1 cut(s) 340
MnlI CCTC 5 cut(s) 26, 46, 163, 438, 469
Mox20I TGGCCA 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 506
MscI TGGCCA 1 cut(s) 299
MseI TTAA 1 cut(s) 267
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 1 cut(s) 398
Mva1269I GAATGC 1 cut(s) 532
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 4 cut(s) 118, 220, 362, 634
NlaIII CATG 2 cut(s) 389, 616
NlaIV GGNNCC 4 cut(s) 201, 276, 310, 364
NmeAIII GCCGAG 1 cut(s) 134
NspI RCATGY 1 cut(s) 389
PctI GAATGC 1 cut(s) 532
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 1 cut(s) 507
PflFI GACNNNGTC 1 cut(s) 566
PkrI GCNGC 3 cut(s) 91, 217, 547
PleI GAGTC 3 cut(s) 138, 442, 473
PpsI GAGTC 3 cut(s) 138, 442, 473
PspN4I GGNNCC 4 cut(s) 201, 276, 310, 364
PsuI RGATCY 1 cut(s) 362
PsyI GACNNNGTC 1 cut(s) 566
RsaI GTAC 2 cut(s) 379, 384
RsaNI GTAC 2 cut(s) 378, 383
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 3 cut(s) 90, 216, 546
Sau3AI GATC 4 cut(s) 118, 220, 362, 634
SchI GAGTC 3 cut(s) 139, 442, 473
SetI ASST 9 cut(s) 11, 23, 52, 57, 75, 99, 155, 412, 525
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
Sse9I AATT 4 cut(s) 252, 259, 281, 592
SsiI CCGC 2 cut(s) 215, 545
StyI CCWWGG 2 cut(s) 21, 580
TaaI ACNGT 5 cut(s) 304, 358, 382, 437, 464
TaiI ACGT 1 cut(s) 412
TaqI TCGA 1 cut(s) 446
TasI AATT 4 cut(s) 252, 259, 281, 592
TatI WGTACW 1 cut(s) 382
TauI GCSGC 2 cut(s) 218, 548
TfiI GAWTC 1 cut(s) 507
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 1 cut(s) 309
TseI GCWGC 1 cut(s) 89
TspDTI ATGAA 2 cut(s) 603, 629
TspGWI ACGGA 1 cut(s) 553
TspRI CASTG 1 cut(s) 309
Tth111I GACNNNGTC 1 cut(s) 566
XapI RAATTY 1 cut(s) 259
XceI RCATGY 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.